Package evaluation to test PlotRNA on Julia 1.14.0-DEV.3081 (21a70e450d*) started at 2026-09-02T06:20:44.382 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 32.16s ################################################################################ # Installation # Installing PlotRNA... Resolving package versions... Installed JpegTurbo_jll ───────── v3.2.0+1 Installed libaom_jll ──────────── v3.14.1+0 Installed libass_jll ──────────── v0.17.5+0 Installed Libtiff_jll ─────────── v4.7.3+0 Installed HarfBuzz_jll ────────── v100.14003.0+0 Installed Libuuid_jll ─────────── v2.42.0+0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed MacroTools ──────────── v0.5.16 Installed DataStructures ──────── v0.18.22 Installed Libmount_jll ────────── v2.42.0+0 Installed x264_jll ────────────── v10164.0.1+0 Installed Cairo_jll ───────────── v1.18.7+0 Installed Cairo ───────────────── v1.1.1 Installed OrderedCollections ──── v1.8.2 Installed Xorg_libXau_jll ─────── v1.0.13+0 Installed Compat ──────────────── v4.18.1 Installed TranscodingStreams ──── v0.11.3 Installed Xorg_libX11_jll ─────── v1.8.13+0 Installed Statistics ──────────── v1.11.4 Installed ViennaRNA_jll ───────── v2.6.4+0 Installed Graphite2_jll ───────── v1.3.16+0 Installed Xorg_libXfixes_jll ──── v6.0.2+0 Installed UnsafePointers ──────── v1.0.0 Installed TensorCore ──────────── v0.1.1 Installed R2R_jll ─────────────── v1.0.6+0 Installed Xorg_libpciaccess_jll ─ v0.19.0+0 Installed PrecompileTools ─────── v1.3.4 Installed Expat_jll ───────────── v2.8.3+0 Installed PCRE_jll ────────────── v8.45.1+0 Installed Libffi_jll ──────────── v3.4.7+0 Installed Pixman_jll ──────────── v0.46.4+0 Installed Fontconfig_jll ──────── v2.17.1+0 Installed Colors ──────────────── v0.13.1 Installed FileIO ──────────────── v1.20.0 Installed CEnum ───────────────── v0.5.0 Installed NaNMath ─────────────── v1.1.4 Installed FriBidi_jll ─────────── v1.0.17+0 Installed GettextRuntime_jll ──── v0.22.4+0 Installed libpng_jll ──────────── v1.6.58+0 Installed ViennaRNA ───────────── v0.11.2 Installed ColorVectorSpace ────── v0.11.0 Installed ColorTypes ──────────── v0.12.1 Installed Glib_jll ────────────── v2.88.3+0 Installed OpenBLAS32_jll ──────── v0.3.34+0 Installed Graphics ────────────── v1.1.3 Installed Requires ────────────── v1.3.1 Installed Librsvg_jll ─────────── v2.54.7+0 Installed Rsvg ────────────────── v1.1.0 Installed Opus_jll ────────────── v1.6.1+0 Installed LAME_jll ────────────── v3.100.3+0 Installed Xorg_libXrender_jll ─── v0.9.12+0 Installed libvorbis_jll ───────── v1.3.8+0 Installed libfdk_aac_jll ──────── v2.0.4+0 Installed libva_jll ───────────── v2.23.0+0 Installed Unitful ─────────────── v1.28.0 Installed Ogg_jll ─────────────── v1.3.6+0 Installed Xorg_libxcb_jll ─────── v1.17.1+0 Installed Luxor ───────────────── v3.8.0 Installed XML2_jll ────────────── v2.13.9+0 Installed Media ───────────────── v0.5.0 Installed GSL_jll ─────────────── v2.7.2+0 Installed FFMPEG_jll ──────────── v8.1.2+0 Installed FixedPointNumbers ───── v0.8.6 Installed Xorg_libXdmcp_jll ───── v1.1.6+0 Installed ColorSchemes ────────── v3.31.0 Installed gdk_pixbuf_jll ──────── v2.42.13+0 Installed FreeType2_jll ───────── v2.14.3+1 Installed LERC_jll ────────────── v4.1.0+0 Installed Reexport ────────────── v1.2.2 Installed FFMPEG ──────────────── v0.4.5 Installed JLLWrappers ─────────── v1.8.0 Installed Preferences ─────────── v1.5.2 Installed LLVMOpenMP_jll ──────── v22.1.7+0 Installed BioStockholm ────────── v0.2.1 Installed LaTeXStrings ────────── v1.4.1 Installed Pango_jll ───────────── v1.58.2+0 Installed libdrm_jll ──────────── v2.4.134+0 Installed Xorg_libXext_jll ────── v1.3.8+0 Installed XZ_jll ──────────────── v5.8.3+0 Installed x265_jll ────────────── v4.1.0+0 Installed Automa ──────────────── v1.2.0 Installed Libiconv_jll ────────── v1.18.0+0 Installed Juno ────────────────── v0.8.4 Installed NLopt_jll ───────────── v2.11.0+0 Installed PlotRNA ─────────────── v0.3.2 Installed Xorg_xtrans_jll ─────── v1.6.0+0 Installing 52 artifacts Installed artifact Xorg_xtrans 39.5 KiB Installed artifact Xorg_libXau 25.8 KiB Installed artifact PCRE 674.1 KiB Installed artifact FreeType2 1.2 MiB Installed artifact XML2 2.0 MiB Installed artifact Pixman 343.0 KiB Installed artifact XZ 1018.2 KiB Installed artifact gdk_pixbuf 681.2 KiB Installed artifact libdrm 304.7 KiB Installed artifact Pango 893.7 KiB Installed artifact JpegTurbo 713.4 KiB Installed artifact Xorg_libXext 187.3 KiB Installed artifact FriBidi 67.6 KiB Installed artifact Libffi 39.2 KiB Installed artifact LERC 220.3 KiB Installed artifact Xorg_libxcb 1.3 MiB Installed artifact FFMPEG 10.2 MiB Installed artifact Librsvg 7.1 MiB Installed artifact Bzip2 152.8 KiB Installed artifact Libuuid 1.9 MiB Installed artifact libaom 3.9 MiB Installed artifact x265 1.1 MiB Installed artifact NLopt 284.1 KiB Installed artifact Xorg_libX11 2.3 MiB Installed artifact Fontconfig 443.8 KiB Installed artifact Graphite2 109.8 KiB Installed artifact Libiconv 1022.9 KiB Installed artifact OpenBLAS32 5.0 MiB Installed artifact Xorg_libXrender 174.0 KiB Installed artifact Glib 4.2 MiB Installed artifact libass 361.1 KiB Installed artifact HarfBuzz 1.5 MiB Installed artifact Opus 792.2 KiB Installed artifact libvorbis 226.3 KiB Installed artifact x264 908.7 KiB Installed artifact Xorg_libpciaccess 23.4 KiB Installed artifact Expat 255.9 KiB Installed artifact Cairo 1.5 MiB Installed artifact Xorg_libXdmcp 49.9 KiB Installed artifact libfdk_aac 2.4 MiB Installed artifact Libtiff 1.7 MiB Installed artifact Xorg_libXfixes 41.4 KiB Installed artifact GettextRuntime 345.6 KiB Installed artifact Ogg 213.4 KiB Installed artifact LLVMOpenMP 573.2 KiB Installed artifact R2R 687.7 KiB Installed artifact libva 187.1 KiB Installed artifact libpng 234.7 KiB Installed artifact LAME 243.9 KiB Installed artifact GSL 3.6 MiB Installed artifact Libmount 3.4 MiB Installed artifact ViennaRNA 63.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [eab79ae3] + PlotRNA v0.3.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [67c07d97] + Automa v1.2.0 [eeb925a3] + BioStockholm v0.2.1 [fa961155] + CEnum v0.5.0 [159f3aea] + Cairo v1.1.1 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.20.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [a2bd30eb] + Graphics v1.1.3 [692b3bcd] + JLLWrappers v1.8.0 [e5e0dc1b] + Juno v0.8.4 [b964fa9f] + LaTeXStrings v1.4.1 ⌅ [ae8d54c2] + Luxor v3.8.0 [1914dd2f] + MacroTools v0.5.16 [e89f7d12] + Media v0.5.0 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] + OrderedCollections v1.8.2 [eab79ae3] + PlotRNA v0.3.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [c4c386cf] + Rsvg v1.1.0 [10745b16] + Statistics v1.11.4 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [e17b2a0c] + UnsafePointers v1.0.0 [05a721ad] + ViennaRNA v0.11.2 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.7+0 [2e619515] + Expat_jll v2.8.3+0 ⌅ [b22a6f82] + FFMPEG_jll v8.1.2+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 ⌅ [1b77fbbe] + GSL_jll v2.7.2+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.88.3+0 [3b182d85] + Graphite2_jll v1.3.16+0 [2e76f6c2] + HarfBuzz_jll v100.14003.0+0 [aacddb02] + JpegTurbo_jll v3.2.0+1 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v22.1.7+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.3+0 [38a345b3] + Libuuid_jll v2.42.0+0 [079eb43e] + NLopt_jll v2.11.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.34+0 [91d4177d] + Opus_jll v1.6.1+0 [2f80f16e] + PCRE_jll v8.45.1+0 [36c8627f] + Pango_jll v1.58.2+0 [30392449] + Pixman_jll v0.46.4+0 [1e27f72a] + R2R_jll v1.0.6+0 [b7a990de] + ViennaRNA_jll v2.6.4+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [a4ae2306] + libaom_jll v3.14.1+0 [0ac62f75] + libass_jll v0.17.5+0 [8e53e030] + libdrm_jll v2.4.134+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [781609d7] + GMP_jll v6.3.0+4 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [3a97d323] + MPFR_jll v4.2.2+1 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 21.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/sTG3E/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 3.7 s ✓ MacroTools 0.5 s ✓ Reexport 0.7 s ✓ MappedArrays 0.6 s ✓ TensorCore 0.7 s ✓ ConstructionBase 1.1 s ✓ Mods 2.0 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.5 s ✓ StatsAPI 1.1 s ✓ Observables 0.7 s ✓ RoundingEmulator 0.5 s ✓ PolygonOps 1.1 s ✓ IterTools 0.8 s ✓ IntervalSets 0.6 s ✓ CEnum 1.7 s ✓ Combinatorics 0.6 s ✓ RingLists 0.7 s ✓ Inflate 0.7 s ✓ Contour 0.6 s ✓ TupleTools 0.8 s ✓ TranscodingStreams 0.5 s ✓ LaTeXStrings 0.8 s ✓ Statistics 0.9 s ✓ StaticArraysCore 0.6 s ✓ WeakKeyIdDicts 0.6 s ✓ StableRNGs 0.5 s ✓ AbstractLattices 0.6 s ✓ PtrArrays 0.6 s ✓ Adapt 0.7 s ✓ PositiveFactorizations 0.5 s ✓ DataAPI 0.6 s ✓ Multisets 0.6 s ✓ LazyModules 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.9 s ✓ AbstractTrees 0.8 s ✓ AbstractFFTs 0.5 s ✓ EnumX 2.0 s ✓ FillArrays 0.5 s ✓ IntegerMathUtils 0.6 s ✓ TriplotBase 0.5 s ✓ IndirectArrays 0.6 s ✓ UnsafePointers 0.5 s ✓ RangeArrays 1.0 s ✓ OrderedCollections 0.9 s ✓ DocStringExtensions 4.9 s ✓ BaseDirs 1.0 s ✓ Gamma 1.2 s ✓ OffsetArrays 0.5 s ✓ IteratorInterfaceExtensions 2.0 s ✓ Crayons ┌ Warning: DEPRECATION NOTICE │ │ Formatting.jl has been unmaintained for a while, with some serious │ correctness bugs compromising the original purpose of the package. As a result, │ it has been deprecated - consider using an alternative, such as │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ If you are not using Formatting.jl as a direct dependency, please consider │ opening an issue on any packages you are using that do use it as a dependency. │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ package originally brings it in as a dependency. └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 0.9 s ✓ Formatting 0.7 s ✓ NaNMath 0.8 s ✓ Requires 2.3 s ✓ ProgressMeter 1.6 s ✓ WoodburyMatrices 1.1 s ✓ Showoff 0.9 s ✓ Scratch 36.8 s ✓ Unitful 1.8 s ✓ StructTypes 1.4 s ✓ StructUtils 2.1 s ✓ PDMats 0.8 s ✓ Compat 1.3 s ✓ Preferences 3.6 s ✓ UnicodeFun 4.6 s ✓ PkgVersion 1.1 s ✓ Media 2.3 s ✓ SimpleTraits 0.6 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3.2 s ✓ MakieCore 0.5 s ✓ IntervalSets → IntervalSetsRandomExt 0.6 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 0.8 s ✓ Permutations 1.3 s ✓ CodecZstd 0.6 s ✓ SignedDistanceFields 1.5 s ✓ Statistics → SparseArraysExt 2.2 s ✓ FixedPointNumbers 0.5 s ✓ IntervalSets → IntervalSetsStatisticsExt 0.7 s ✓ AliasTables 0.8 s ✓ ArrayInterface 1.6 s ✓ Adapt → AdaptSparseArraysExt 0.8 s ✓ Missings 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.6 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.3 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Primes 1.2 s ✓ LogExpFunctions 1.1 s ✓ PikaParser 1.9 s ✓ HypergeometricFunctions 0.6 s ✓ PaddedViews 0.6 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.6 s ✓ StackViews 0.5 s ✓ TableTraits 0.6 s ✓ Ratios 7.3 s ✓ FileIO 3.1 s ✓ AxisAlgorithms 1.0 s ✓ RelocatableFolders 2.1 s ✓ Unitful → ConstructionBaseUnitfulExt 1.5 s ✓ Unitful → PrintfExt 1.5 s ✓ Unitful → InverseFunctionsUnitfulExt 1.4 s ✓ Unitful → NaNMathExt 0.8 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.9 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 1.2 s ✓ PrecompileTools 1.1 s ✓ JLLWrappers 1.5 s ✓ Juno 2.1 s ✓ Setfield 1.8 s ✓ AxisArrays 6.2 s ✓ ColorTypes 2.0 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.8 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2.4 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 5.7 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 0.8 s ✓ MosaicViews 2.5 s ✓ Tables 0.9 s ✓ Ratios → RatiosFixedPointNumbersExt 2.6 s ✓ ChainRulesCore 9.4 s ✓ Aqua 6.0 s ✓ DataStructures 15.6 s ✓ SIMD 2.0 s ✓ CommonSolve 20.4 s ✓ StaticArrays 2.4 s ✓ MuladdMacro 17.9 s ✓ Automa 3.2 s ✓ RecipesBase 2.4 s ✓ ADTypes 10.8 s ✓ Parsers 1.8 s ✓ GSL_jll 1.2 s ✓ Libffi_jll 1.2 s ✓ EarCut_jll 1.2 s ✓ OpenBLAS32_jll 1.1 s ✓ Bzip2_jll 1.1 s ✓ isoband_jll 1.3 s ✓ OpenBLASConsistentFPCSR_jll 1.3 s ✓ XZ_jll 1.3 s ✓ NLopt_jll 1.1 s ✓ Rmath_jll 1.6 s ✓ OpenSpecFun_jll 1.2 s ✓ Xorg_xtrans_jll 1.2 s ✓ Opus_jll 4.5 s ✓ IntelOpenMP_jll 1.1 s ✓ x265_jll 1.0 s ✓ libpng_jll 1.1 s ✓ CRlibm_jll 4.6 s ✓ oneTBB_jll 1.1 s ✓ Imath_jll 1.1 s ✓ Libmount_jll 1.1 s ✓ libfdk_aac_jll 2.7 s ✓ Libuuid_jll 2.3 s ✓ FriBidi_jll 2.9 s ✓ LERC_jll 2.1 s ✓ Xorg_libXau_jll 1.6 s ✓ Ogg_jll 1.5 s ✓ FFTW_jll 1.6 s ✓ LAME_jll 1.6 s ✓ CoreMath_jll 1.4 s ✓ Graphite2_jll 1.2 s ✓ x264_jll 1.3 s ✓ Xorg_libpciaccess_jll 1.6 s ✓ LLVMOpenMP_jll 1.1 s ✓ Libiconv_jll 1.9 s ✓ libaom_jll 2.5 s ✓ Xorg_libXdmcp_jll 1.4 s ✓ Giflib_jll 1.8 s ✓ Expat_jll 2.2 s ✓ JpegTurbo_jll 1.2 s ✓ PCRE_jll 6.0 s ✓ Colors 1.6 s ✓ ColorVectorSpace 5.8 s ✓ QOI 1.2 s ✓ FiniteDiff 2.0 s ✓ Accessors → TestExt 2.3 s ✓ Accessors → IntervalSetsExt 1.5 s ✓ Accessors → LinearAlgebraExt 1.6 s ✓ Accessors → UnitfulExt 1.4 s ✓ StructArrays 0.9 s ✓ StructUtils → StructUtilsTablesExt 5.7 s ✓ StableHashTraits 1.5 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.6 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2.8 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.3 s ✓ SortingAlgorithms 2.3 s ✓ QuadGK 1.4 s ✓ SimplePartitions 48.9 s ✓ TiffImages 1.3 s ✓ StaticArrays → StaticArraysStatisticsExt 1.6 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.4 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.6 s ✓ Adapt → AdaptStaticArraysExt 2.5 s ✓ FillArrays → FillArraysStaticArraysExt 9.2 s ✓ MarchingCubes 1.4 s ✓ Accessors → StaticArraysExt 2.0 s ✓ FFTA 12.3 s ✓ BioStockholm 2.8 s ✓ IntervalSets → IntervalSetsRecipesBaseExt 37.7 s ✓ Polynomials 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 0.8 s ✓ ADTypes → ADTypesChainRulesCoreExt 2.6 s ✓ DifferentiationInterface 9.0 s ✓ JSON 1.2 s ✓ FreeType2_jll 1.1 s ✓ Isoband 1.3 s ✓ R2R_jll 1.7 s ✓ Rmath 5.0 s ✓ SpecialFunctions 1.1 s ✓ CRlibm Downloading artifact: IntelOpenMP Downloading artifact: oneTBB 9.7 s ✓ MKL_jll 1.3 s ✓ OpenEXR_jll 1.2 s ✓ libvorbis_jll 1.1 s ✓ CoreMath 1.4 s ✓ libdrm_jll 1.1 s ✓ Pixman_jll 1.2 s ✓ XML2_jll 1.4 s ✓ GettextRuntime_jll 1.2 s ✓ Xorg_libxcb_jll 1.2 s ✓ Libtiff_jll 1.5 s ✓ libsixel_jll 2.3 s ✓ ViennaRNA_jll 1.3 s ✓ Animations 1.0 s ✓ Graphics 33.7 s ✓ ImageCore 8.8 s ✓ ColorSchemes 1.5 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 1.3 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 5.4 s ✓ Roots 1.6 s ✓ StructArrays → StructArraysSparseArraysExt 0.7 s ✓ StructArrays → StructArraysLinearAlgebraExt 0.6 s ✓ StructArrays → StructArraysAdaptExt 1.7 s ✓ StructArrays → StructArraysStaticArraysExt 1.2 s ✓ Accessors → StructArraysExt 5.3 s ✓ StatsBase 4.7 s ✓ Interpolations 5.8 s ✓ Polynomials → PolynomialsMakieCoreExt 3.7 s ✓ Polynomials → PolynomialsChainRulesCoreExt 4.3 s ✓ SimplePolynomials 1.0 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1.4 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.9 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1.2 s ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 4.2 s ✓ ColorBrewer 2.3 s ✓ FreeType 1.3 s ✓ Fontconfig_jll 3.5 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2.1 s ✓ ColorVectorSpace → SpecialFunctionsExt 3.5 s ✓ StatsFuns 5.3 s ✓ FFTW 5.5 s ✓ OpenEXR 5.7 s ✓ IntervalArithmetic 1.1 s ✓ LightXML 1.8 s ✓ Glib_jll 2.0 s ✓ Xorg_libX11_jll 9.6 s ✓ ViennaRNA 3.0 s ✓ ImageBase 4.3 s ✓ PNGFiles 10.7 s ✓ Sixel 8.8 s ✓ JpegTurbo 20.6 s ✓ PlotUtils 1.5 s ✓ Roots → RootsChainRulesCoreExt 1.8 s ✓ Roots → RootsUnitfulExt WARNING: method definition for centered at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/primitives/rectangles.jl:515 declares type variable N but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:209 declares type variable FT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:209 declares type variable VT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:221 declares type variable FT but does not use it. WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:221 declares type variable VT but does not use it. 6.0 s ✓ GeometryBasics 2.5 s ✓ PDMats → StatsBaseExt 99.5 s ✓ UnicodePlots 4.2 s ✓ Interpolations → InterpolationsUnitfulExt 4.5 s ✓ LinearAlgebraX 1.7 s ✓ NLSolversBase 3.0 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 0.9 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 4.2 s ✓ Polynomials → PolynomialsFFTWExt 1.9 s ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1.2 s ✓ IntervalArithmetic → IntervalArithmeticIrrationalConstantsExt 1.4 s ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1.3 s ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 0.9 s ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1.2 s ✓ Xorg_libXfixes_jll 1.1 s ✓ Xorg_libXrender_jll 1.1 s ✓ Xorg_libXext_jll 1.2 s ✓ gdk_pixbuf_jll 5.0 s ✓ ImageAxes 2.3 s ✓ Packing 9.9 s ✓ GridLayoutBase 3.0 s ✓ ShaderAbstractions 4.2 s ✓ FreeTypeAbstraction 6.5 s ✓ UnicodePlots → IntervalSetsExt 7.4 s ✓ UnicodePlots → UnitfulExt 10.6 s ✓ UnicodePlots → FreeTypeExt 1.4 s ✓ LineSearches 12.1 s ✓ Distributions 6.1 s ✓ ExactPredicates 1.9 s ✓ Cairo_jll 1.9 s ✓ libva_jll 1.5 s ✓ Libglvnd_jll 3.0 s ✓ ImageMetadata 20.1 s ✓ MathTeXEngine 6.8 s ✓ Optim 4.7 s ✓ Distributions → DistributionsTestExt 3.7 s ✓ SimpleRandom 4.8 s ✓ Distributions → DistributionsChainRulesCoreExt 1.8 s ✓ HarfBuzz_jll 1.7 s ✓ libwebp_jll 6.4 s ✓ Netpbm 9.8 s ✓ SimpleGraphs 4.9 s ✓ KernelDensity 1.1 s ✓ libass_jll 1.1 s ✓ Pango_jll 5.8 s ✓ WebP 11.1 s ✓ DelaunayTriangulation 1.3 s ✓ FFMPEG_jll 1.6 s ✓ Cairo 1.3 s ✓ Librsvg_jll 4.5 s ✓ ImageIO 0.9 s ✓ FFMPEG 1.2 s ✓ Rsvg 199.3 s ✓ Makie 19.2 s ✓ Luxor ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`, `concrete_only` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base Base_compiler.jl:58 [2] func2string(func::typeof(MakieCore.linesegments)) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:9 [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:21 [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:22 [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:240 [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:237 [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/primitives.jl:6 [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:131 [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:51 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/screen.jl:307 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:363 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:439 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:434 [inlined] [14] top-level scope @ ~/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:6 [15] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [16] top-level scope @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:11 [17] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [18] macro expansion @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [20] top-level scope @ ~/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:37 [21] include(mod::Module, _path::String) @ Base Base.jl:334 [22] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:4 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:1 in expression starting at stdin:5 ✗ CairoMakie 13.8 s ✓ PlotRNA ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("13f3f980-e62b-5c42-98c6-ff1f3baf88f0"), "CairoMakie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2661 [inlined] [3] top-level scope @ ~/.julia/packages/PlotRNA/j5Vgx/ext/CairoMakieExt.jl:7 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/ext/CairoMakieExt.jl:1 in expression starting at stdin:5 ✗ PlotRNA → CairoMakieExt 18.8 s ✓ PlotRNA → UnicodePlotsExt 322 dependencies successfully precompiled in 1407 seconds. 45 already precompiled. 5 dependencies had output during precompilation: ┌ GeometryBasics │ WARNING: method definition for centered at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/primitives/rectangles.jl:515 declares type variable N but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:209 declares type variable FT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:209 declares type variable VT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:221 declares type variable FT but does not use it. │ WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/3PqdK/src/meshes.jl:221 declares type variable VT but does not use it. └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ┌ CairoMakie │ ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`, `concrete_only` │ Stacktrace: │ [1] getproperty(x::Core.TypeName, f::Symbol) │ @ Base Base_compiler.jl:58 │ [2] func2string(func::typeof(MakieCore.linesegments)) │ @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:9 │ [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:21 │ [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:22 │ [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) │ @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:240 │ [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) │ @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:237 │ [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) │ @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/primitives.jl:6 │ [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:131 │ [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) │ @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:51 │ [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) │ @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/screen.jl:307 │ [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:363 │ [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) │ @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:439 │ [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:434 [inlined] │ [14] top-level scope │ @ ~/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:6 │ [15] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [16] top-level scope │ @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:11 │ [17] macro expansion │ @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] │ [18] macro expansion │ @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:15 [inlined] │ [19] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [20] top-level scope │ @ ~/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:37 │ [21] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [22] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:4 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:10 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:1 │ in expression starting at stdin:5 └ ┌ PlotRNA → CairoMakieExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("13f3f980-e62b-5c42-98c6-ff1f3baf88f0"), "CairoMakie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2661 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/PlotRNA/j5Vgx/ext/CairoMakieExt.jl:7 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/ext/CairoMakieExt.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 2 packages failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_5gpFtv" (ProcessExited(1)). PlotRNA → CairoMakieExt Failed to precompile CairoMakieExt [ca75cd9b-a460-5eb8-b50b-291f4a5f34ed] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakieExt/jl_jr4744" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1328.58s ################################################################################ # Testing # Testing PlotRNA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_1uO4kC/Project.toml` ⌅ [4c88cf16] + Aqua v0.6.7 ⌅ [13f3f980] + CairoMakie v0.10.12 [eab79ae3] + PlotRNA v0.3.2 [b8865327] + UnicodePlots v3.8.4 Updating `/tmp/jl_1uO4kC/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 ⌅ [4c88cf16] + Aqua v0.6.7 [4fba245c] + ArrayInterface v7.30.1 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.4.0 [96374032] + CRlibm v1.0.2 ⌅ [13f3f980] + CairoMakie v0.10.12 [d360d2e6] + ChainRulesCore v1.26.1 [6b39b394] + CodecZstd v0.8.7 [a2cac450] + ColorBrewer v0.4.2 ⌅ [3da002f7] ↓ ColorTypes v0.12.1 ⇒ v0.11.5 ⌃ [c3611d14] ↓ ColorVectorSpace v0.11.0 ⇒ v0.10.0 ⌅ [5ae59095] ↓ Colors v0.13.1 ⇒ v0.12.11 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [b7a15901] + CoreMath v0.1.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [a0c0ee7d] + DifferentiationInterface v0.7.21 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [429591f6] + ExactPredicates v2.2.9 [b86e33f2] + FFTA v0.3.1 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.33.0 [59287772] + Formatting v0.4.3 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌃ [a0844989] + Gamma v1.1.0 ⌅ [5c1252a2] + GeometryBasics v0.4.2 ⌅ [3955a311] + GridLayoutBase v0.9.2 [34004b35] + HypergeometricFunctions v0.3.30 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.10 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.4 [a98d9a8b] + Interpolations v0.16.3 [d1acc4aa] + IntervalArithmetic v1.0.11 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [682c06a0] + JSON v1.7.1 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.12 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [d3d80556] + LineSearches v7.7.1 [9b3f67b0] + LinearAlgebraX v0.2.11 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [ee78f7c6] + Makie v0.19.12 ⌅ [20f20a25] + MakieCore v0.6.9 [dbb5928d] + MappedArrays v0.4.3 [299715c1] + MarchingCubes v0.1.11 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.7 [3b2b4ff1] + Multisets v0.4.6 [d41bc354] + NLSolversBase v8.0.1 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v2.2.2 [90014a1f] + PDMats v0.11.41 [f57f5aa1] + PNGFiles v0.4.5 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 ⌅ [69de0a69] + Parsers v2.8.7 [2ae35dd2] + Permutations v0.4.23 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [eab79ae3] + PlotRNA v0.3.2 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 ⌃ [f27b6e38] + Polynomials v4.0.21 [85a6dd25] + PositiveFactorizations v0.2.4 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [4b34888f] + QOI v1.0.2 [1fd47b50] + QuadGK v2.11.3 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [05181044] + RelocatableFolders v1.0.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [992d4aef] + Showoff v1.1.1 [73760f76] + SignedDistanceFields v0.4.1 [55797a34] + SimpleGraphs v0.8.10 [ec83eff0] + SimplePartitions v0.3.3 [cc47b68c] + SimplePolynomials v0.2.18 [a6525b86] + SimpleRandom v0.3.2 [699a6c99] + SimpleTraits v0.9.6 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 ⌅ [c5dd0088] + StableHashTraits v1.3.4 [860ef19b] + StableRNGs v1.0.4 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 ⌅ [4c63d2b9] + StatsFuns v1.5.2 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.8.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [731e570b] + TiffImages v0.11.9 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [1cfade01] + UnicodeFun v0.4.1 [b8865327] + UnicodePlots v3.8.4 [ecbed89c] + WeakKeyIdDicts v0.1.0 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.1.0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [a38c48d9] + CoreMath_jll v0.1.0+0 [5ae413db] + EarCut_jll v3.2.3+0 [f5851436] + FFTW_jll v3.3.12+0 ⌅ [59f7168a] + Giflib_jll v5.2.3+0 [905a6f67] + Imath_jll v3.2.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [856f044c] + MKL_jll v2025.2.0+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.34+0 [18a262bb] + OpenEXR_jll v3.4.14+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [9a68df92] + isoband_jll v0.2.3+0 [075b6546] + libsixel_jll v1.10.5+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [8bf52ea8] + CRC32c v1.11.0 [8ba89e20] + Distributed v1.12.0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [3fa0cd96] + REPL v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [bea87d4a] + SuiteSparse_jll v7.10.1+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_1uO4kC/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [eeb925a3] BioStockholm v0.2.1 ⌅ [13f3f980] CairoMakie v0.10.12 [35d6a980] ColorSchemes v3.31.0 ⌅ [ae8d54c2] Luxor v3.8.0 [eab79ae3] PlotRNA v0.3.2 [aea7be01] PrecompileTools v1.3.4 [ae029012] Requires v1.3.1 [10745b16] Statistics v1.11.4 [b8865327] UnicodePlots v3.8.4 [05a721ad] ViennaRNA v0.11.2 [1e27f72a] R2R_jll v1.0.6+0 [4af54fe1] LazyArtifacts v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1uO4kC/Manifest.toml` [47edcb42] ADTypes v1.24.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 ⌅ [4c88cf16] Aqua v0.6.7 [4fba245c] ArrayInterface v7.30.1 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.4.0 [eeb925a3] BioStockholm v0.2.1 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... testing PlotRNA testing Aqua.test_all ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5 └ @ Aqua ~/.julia/packages/Aqua/zpdNP/src/exports.jl:5 ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.Piracy.var"#3#4"{Bool, IdSet{Any}, Vector{Method}}, x::Module) at exports.jl:5 └ @ Aqua ~/.julia/packages/Aqua/zpdNP/src/exports.jl:5 Possible type-piracy detected: [1] PlotRNA.R2R.Plot(svg::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:90 [2] PlotRNA.R2R.Plot(svg) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:90 Piracy: Test Failed at /home/pkgeval/.julia/packages/Aqua/zpdNP/src/piracy.jl:206 Expression: isempty(v) Evaluated: isempty(Method[PlotRNA.R2R.Plot(svg::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:90, PlotRNA.R2R.Plot(svg) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:90]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [2] test_piracy(m::Module; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/zpdNP/src/piracy.jl:206 [3] test_piracy(m::Module) @ Aqua ~/.julia/packages/Aqua/zpdNP/src/piracy.jl:191 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/zpdNP/src/Aqua.jl:118 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [6] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, project_toml_formatting::Bool, piracy::Bool) @ Aqua ~/.julia/packages/Aqua/zpdNP/src/Aqua.jl:117 testing plot_structure ┌ Warning: Can't find java executable, skipping VARNA tests └ @ Main ~/.julia/packages/PlotRNA/j5Vgx/test/runtests.jl:12 testing R2R.run_r2r R2R.run_r2r: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 Test threw exception Expression: R2R.run_r2r(msa) isa Tres non-zero exit code running r2r to generate out.sto Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] (::PlotRNA.R2R.var"#8#9"{String, Bool, Float64})(output_dir::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147 [3] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String; prefix::String) @ Base.Filesystem file.jl:949 [4] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String) @ Base.Filesystem file.jl:945 [inlined] [5] (::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}})(input_path::String, ::IOStream) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined] [6] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}, parent::String) @ Base.Filesystem file.jl:920 [7] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}) @ Base.Filesystem file.jl:918 [inlined] [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134 [9] run_r2r(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [11] macro expansion @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [13] top-level scope @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:20 R2R.run_r2r: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 Test threw exception Expression: R2R.run_r2r(msa) isa Tres non-zero exit code running r2r to generate out.sto Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] (::PlotRNA.R2R.var"#8#9"{String, Bool, Float64})(output_dir::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147 [3] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String; prefix::String) @ Base.Filesystem file.jl:949 [4] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String) @ Base.Filesystem file.jl:945 [inlined] [5] (::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}})(input_path::String, ::IOStream) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined] [6] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}, parent::String) @ Base.Filesystem file.jl:920 [7] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}) @ Base.Filesystem file.jl:918 [inlined] [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134 [9] run_r2r(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [11] macro expansion @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [13] top-level scope @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:20 testing R2R.plot R2R.plot: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 Test threw exception Expression: R2R.plot(msa) isa Tres non-zero exit code running r2r to generate out.sto Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] (::PlotRNA.R2R.var"#8#9"{String, Bool, Float64})(output_dir::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147 [3] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String; prefix::String) @ Base.Filesystem file.jl:949 [4] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String) @ Base.Filesystem file.jl:945 [inlined] [5] (::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}})(input_path::String, ::IOStream) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined] [6] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}, parent::String) @ Base.Filesystem file.jl:920 [7] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}) @ Base.Filesystem file.jl:918 [inlined] [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134 [9] run_r2r(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined] [10] plot(msa::MSA{Char}; kwargs::@Kwargs{}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:109 [11] plot(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:108 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [13] macro expansion @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [15] top-level scope @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:28 R2R.plot: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 Test threw exception Expression: R2R.plot(msa) isa Tres non-zero exit code running r2r to generate out.sto Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] (::PlotRNA.R2R.var"#8#9"{String, Bool, Float64})(output_dir::String) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147 [3] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String; prefix::String) @ Base.Filesystem file.jl:949 [4] mktempdir(fn::PlotRNA.R2R.var"#8#9"{String, Bool, Float64}, parent::String) @ Base.Filesystem file.jl:945 [inlined] [5] (::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}})(input_path::String, ::IOStream) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined] [6] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}, parent::String) @ Base.Filesystem file.jl:920 [7] mktemp(fn::PlotRNA.R2R.var"#6#7"{Bool, Float64, MSA{Char}}) @ Base.Filesystem file.jl:918 [inlined] [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134 [9] run_r2r(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined] [10] plot(msa::MSA{Char}; kwargs::@Kwargs{}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:109 [11] plot(msa::MSA{Char}) @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:108 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [13] macro expansion @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [15] top-level scope @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:28 testing uniplot WARNING: importing deprecated binding Makie.MakieLayout into CairoMakieThe module `MakieLayout` has been removed and integrated into Makie, so simply replace all usage of `MakieLayout` with `Makie`. WARNING: importing deprecated binding Makie._alternative_fonts into CairoMakie, use ALTERNATIVE_FONTS instead. WARNING: importing deprecated binding Makie._current_figure into CairoMakie, use CURRENT_FIGURE instead. WARNING: importing deprecated binding Makie._default_font into CairoMakie, use DEFAULT_FONT instead. WARNING: importing deprecated binding Makie.default_palettes into CairoMakie, use DEFAULT_PALETTES instead. WARNING: importing deprecated binding Makie.minimal_default into CairoMakie, use MAKIE_DEFAULT_THEME instead. ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`, `concrete_only` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base Base_compiler.jl:58 [2] func2string(func::typeof(MakieCore.linesegments)) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:9 [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:21 [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/recipes.jl:22 [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:240 [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) @ MakieCore ~/.julia/packages/MakieCore/tAY2U/src/attributes.jl:237 [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/primitives.jl:6 [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:131 [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/infrastructure.jl:51 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/VqiwS/src/screen.jl:307 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:363 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:439 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/RgxaV/src/display.jl:434 [inlined] [14] top-level scope @ ~/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:6 [15] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [16] top-level scope @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:11 [17] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [18] macro expansion @ ~/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [20] top-level scope @ ~/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:37 [21] include(mod::Module, _path::String) @ Base Base.jl:334 [22] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/RgxaV/precompile/shared-precompile.jl:4 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/VqiwS/src/CairoMakie.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ CairoMakie │ [Output was shown above] └ PlotRNA: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/runtests.jl:7 Got exception outside of a @test LoadError: The following 1 package failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_2coSIL" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/plot_structure_makie.jl:1 Test Summary: | Pass Fail Error Total Time PlotRNA | 47 1 5 53 7m54.9s Aqua.test_all | 7 1 8 1m01.5s Method ambiguity | 1 1 10.7s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 3.7s Compare Project.toml and test/Project.toml | 1 1 0.1s Stale dependencies | 1 1 10.8s Compat bounds | 1 1 1.6s Project.toml formatting | 1 1 0.5s Piracy | 1 1 16.9s plot_structure | 39 39 14.1s R2R.run_r2r | 2 2 3.4s R2R.plot | 2 2 0.1s uniplot | 1 1 4.7s RNG of the outermost testset: Random.Xoshiro(0xbbe360603e953056, 0x1d25928c83e5cff2, 0x9e6fd5cdd4506a0d, 0x224cbc5dcc7b7d46, 0x1b9c6b9b87391f57) ERROR: LoadError: Some tests did not pass: 47 passed, 1 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/runtests.jl:7 Testing failed after 447.08s ERROR: LoadError: Package PlotRNA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2084.72s: package fails to precompile