Package evaluation to test VCFTools on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-30T19:57:36.696 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.24s ################################################################################ # Installation # Installing VCFTools... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [a620830f] + VCFTools v0.2.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.9 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.17.0 [a0844989] + Gamma v1.2.0 [34004b35] + HypergeometricFunctions v0.3.30 [09f84164] + HypothesisTests v0.11.8 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [10745b16] + Statistics v1.11.4 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [3bb67fe8] + TranscodingStreams v0.11.3 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.17s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 6.3 s ✓ HypothesisTests 6.3 s ✓ VCFTools 2 dependencies successfully precompiled in 15 seconds. 114 already precompiled. Precompilation completed after 40.35s ################################################################################ # Testing # Testing VCFTools Status `/tmp/jl_Ft0Uu7/Project.toml` [336ed68f] CSV v0.10.17 [944b1d66] CodecZlib v0.7.9 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.131 [09f84164] HypothesisTests v0.11.8 [92933f4c] ProgressMeter v1.11.0 [276daf66] SpecialFunctions v2.9.0 [2913bbd2] StatsBase v0.34.13 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Ft0Uu7/Manifest.toml` [7d9f7c33] Accessors v0.1.45 [66dad0bd] AliasTables v1.1.3 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.17 [944b1d66] CodecZlib v0.7.9 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [a0844989] Gamma v1.2.0 [34004b35] HypergeometricFunctions v0.3.30 [09f84164] HypothesisTests v0.11.8 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.1 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.41 ⌅ [69de0a69] Parsers v2.8.7 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.7 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [10745b16] Statistics v1.11.4 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 ⌅ [892a3eda] StringManipulation v0.5.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [3bb67fe8] TranscodingStreams v0.11.3 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time H-W test | 1 1 2.8s Test Summary: | Pass Total Time openvcf | 4 4 7.5s Test Summary: | Pass Total Time nrecords(vcf) | 1 1 3.1s Test Summary: | Pass Total Time nsamples(vcf) | 1 1 0.1s Test Summary: | Pass Total Time gtstats(record) | 4 4 4.5s ┌ Warning: accessing `Type.name` is deprecated without replacement. If for detection, use `Base.isType(x)`. │ caller = ProgressMeter.Progress(n::Int64, dt::Int64, desc::String, barlen::Nothing, color::Symbol, output::Base.PipeEndpoint; offset::Int64) at deprecated.jl:1 └ @ ProgressMeter ~/.julia/packages/ProgressMeter/N660J/src/deprecated.jl:1 ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Progress: 0%| | ETA: 1:08:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 19.632410 seconds (6.87 M allocations: 464.788 MiB, 2.08% gc time, 95.14% compilation time: 5% of which was recompilation) 0.428062 seconds (1.36 M allocations: 111.055 MiB, 7.83% gc time, 28.31% compilation time) Progress: 0%| | ETA: 1:05:56 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 6.315353 seconds (2.28 M allocations: 171.043 MiB, 0.66% gc time, 92.53% compilation time) 0.480121 seconds (1.35 M allocations: 110.560 MiB, 3.52% gc time) Test Summary: | Pass Total Time gtstats(vcf) | 12 12 32.2s Test Summary: | Pass Total Time get sampleID | 4 4 0.1s Test Summary: | Pass Total Time Fishers exact HWE test | 20 20 0.0s Test Summary: | Pass Total Time filter_genotype(record) | 9 9 1.7s Test Summary: | Pass Total Time filter_genotype(file) | 4068 4068 2.1s Test Summary: | Pass Total Time flip_gt_allele | 4 4 1.0s Test Summary: | Pass Total Time match_gt_allele | 4 4 0.1s Test Summary: | Pass Total Time binomial_proportion_test | 2 2 1.2s [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:17:05 Progress: 0%|▏ | ETA: 0:15:26 Progress: 0%|▏ | ETA: 0:15:09 Progress: 0%|▎ | ETA: 0:14:27 Progress: 1%|▎ | ETA: 0:14:06 Progress: 1%|▎ | ETA: 0:14:08 Progress: 1%|▍ | ETA: 0:13:50 Progress: 1%|▍ | ETA: 0:13:39 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ETA: 0:12:50 Progress: 5%|██▎ | ETA: 0:12:48 Progress: 6%|██▎ | ETA: 0:12:49 Progress: 6%|██▍ | ETA: 0:12:47 Progress: 6%|██▍ | ETA: 0:12:45 Progress: 6%|██▍ | ETA: 0:12:45 Progress: 6%|██▌ | ETA: 0:12:44 Progress: 6%|██▌ | ETA: 0:12:42 Progress: 6%|██▋ | ETA: 0:12:42 Progress: 6%|██▋ | ETA: 0:12:41 Progress: 7%|██▊ | ETA: 0:12:40 Progress: 7%|██▊ | ETA: 0:12:38 Progress: 7%|██▊ | ETA: 0:12:39 Progress: 7%|██▉ | ETA: 0:12:37 Progress: 7%|██▉ | ETA: 0:12:35 Progress: 7%|███ | ETA: 0:12:35 Progress: 7%|███ | ETA: 0:12:33 Progress: 7%|███▏ | ETA: 0:12:32 Progress: 8%|███▏ | ETA: 0:12:30 Progress: 8%|███▏ | ETA: 0:12:31 Progress: 8%|███▎ | ETA: 0:12:29 Progress: 8%|███▎ | ETA: 0:12:28 Progress: 8%|███▍ | ETA: 0:12:28 Progress: 8%|███▍ | ETA: 0:12:27 Progress: 8%|███▍ | ETA: 0:12:25 Progress: 9%|███▌ | ETA: 0:12:25 Progress: 9%|███▌ | ETA: 0:12:24 Progress: 9%|███▋ | ETA: 0:12:22 Progress: 9%|███▋ | ETA: 0:12:21 Progress: 9%|███▊ | ETA: 0:12:21 Progress: 9%|███▊ | ETA: 0:12:19 Progress: 9%|███▊ | ETA: 0:12:17 Progress: 9%|███▉ | ETA: 0:12:18 Progress: 10%|███▉ | ETA: 0:12:16 Progress: 10%|████ | ETA: 0:12:15 Progress: 10%|████ | ETA: 0:12:15 Progress: 10%|████▏ | ETA: 0:12:14 Progress: 10%|████▏ | ETA: 0:12:12 Progress: 10%|████▏ | ETA: 0:12:10 Progress: 10%|████▎ | ETA: 0:12:10 Progress: 100%|█████████████████████████████████████████| Time: 0:01:24 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 15:12:22 Progress: 22%|█████████▎ | ETA: 0:04:42 Progress: 45%|██████████████████▍ | ETA: 0:01:43 Progress: 69%|████████████████████████████▎ | ETA: 0:00:38 Progress: 93%|██████████████████████████████████████▏ | ETA: 0:00:06 Progress: 100%|█████████████████████████████████████████| Time: 0:01:25 [ Info: 823 records are matched 180.601009 seconds (1.12 G allocations: 85.512 GiB, 8.25% gc time, 0.71% compilation time) [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:14:13 Progress: 0%|▏ | ETA: 0:13:23 Progress: 0%|▏ | ETA: 0:13:41 Progress: 1%|▎ | ETA: 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Progress: 5%|█▉ | ETA: 0:12:52 Progress: 5%|█▉ | ETA: 0:12:50 Progress: 5%|██ | ETA: 0:12:48 Progress: 5%|██ | ETA: 0:12:48 Progress: 5%|██▏ | ETA: 0:12:47 Progress: 5%|██▏ | ETA: 0:12:45 Progress: 5%|██▏ | ETA: 0:12:42 Progress: 5%|██▎ | ETA: 0:12:43 Progress: 6%|██▎ | ETA: 0:12:41 Progress: 6%|██▍ | ETA: 0:12:38 Progress: 6%|██▍ | ETA: 0:12:38 Progress: 6%|██▌ | ETA: 0:12:37 Progress: 6%|██▌ | ETA: 0:12:35 Progress: 6%|██▌ | ETA: 0:12:33 Progress: 6%|██▋ | ETA: 0:12:34 Progress: 6%|██▋ | ETA: 0:12:32 Progress: 7%|██▊ | ETA: 0:12:31 Progress: 7%|██▊ | ETA: 0:12:31 Progress: 7%|██▉ | ETA: 0:12:30 Progress: 7%|██▉ | ETA: 0:12:28 Progress: 7%|██▉ | ETA: 0:12:26 Progress: 7%|███ | ETA: 0:12:30 Progress: 7%|███ | ETA: 0:12:28 Progress: 8%|███▏ | ETA: 0:12:26 Progress: 8%|███▏ | ETA: 0:12:26 Progress: 8%|███▎ | ETA: 0:12:24 Progress: 8%|███▎ | ETA: 0:12:22 Progress: 8%|███▎ | ETA: 0:12:22 Progress: 8%|███▍ | ETA: 0:12:21 Progress: 8%|███▍ | ETA: 0:12:19 Progress: 8%|███▌ | ETA: 0:12:17 Progress: 9%|███▌ | ETA: 0:12:17 Progress: 9%|███▋ | ETA: 0:12:15 Progress: 9%|███▋ | ETA: 0:12:14 Progress: 9%|███▋ | ETA: 0:12:14 Progress: 9%|███▊ | ETA: 0:12:12 Progress: 9%|███▊ | ETA: 0:12:11 Progress: 9%|███▉ | ETA: 0:12:11 Progress: 10%|███▉ | ETA: 0:12:09 Progress: 10%|████ | ETA: 0:12:08 Progress: 10%|████ | ETA: 0:12:07 Progress: 10%|████ | ETA: 0:12:06 Progress: 10%|████▏ | ETA: 0:12:05 Progress: 10%|████▏ | ETA: 0:12:04 Progress: 10%|████▎ | ETA: 0:12:03 Progress: 100%|█████████████████████████████████████████| Time: 0:01:23 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 15:22:56 Progress: 22%|████████▉ | ETA: 0:04:59 Progress: 45%|██████████████████▍ | ETA: 0:01:43 Progress: 71%|█████████████████████████████ | ETA: 0:00:35 Progress: 96%|███████████████████████████████████████▎ | ETA: 0:00:04 Progress: 100%|█████████████████████████████████████████| Time: 0:01:26 [ Info: 0 records are matched 180.207978 seconds (1.12 G allocations: 85.493 GiB, 8.27% gc time, 0.48% compilation time) Test Summary: | Pass Total Time conformgt_by_id | 1649 1649 9m05.3s [ Info: Match target POS to reference POS Progress: 0%| | ETA: 15:05:42 Progress: 20%|████████▎ | ETA: 0:05:26 Progress: 42%|█████████████████▍ | ETA: 0:01:52 Progress: 67%|███████████████████████████▋ | ETA: 0:00:40 Progress: 92%|█████████████████████████████████████▉ | ETA: 0:00:07 Progress: 100%|█████████████████████████████████████████| Time: 0:01:24 [ Info: 833 records are matched 94.801138 seconds (569.62 M allocations: 43.521 GiB, 8.39% gc time, 0.59% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 15:22:40 Progress: 22%|█████████▏ | ETA: 0:04:48 Progress: 44%|██████████████████▎ | ETA: 0:01:45 Progress: 67%|███████████████████████████▌ | ETA: 0:00:41 Progress: 94%|██████████████████████████████████████▋ | ETA: 0:00:05 Progress: 100%|█████████████████████████████████████████| Time: 0:01:26 [ Info: 493 records are matched 96.578546 seconds (569.61 M allocations: 43.521 GiB, 8.58% gc time, 0.66% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 15:28:12 Progress: 24%|█████████▊ | ETA: 0:04:28 Progress: 47%|███████████████████▎ | ETA: 0:01:35 Progress: 71%|█████████████████████████████▏ | ETA: 0:00:35 Progress: 99%|████████████████████████████████████████▌| ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:01:26 [ Info: 0 records are matched 97.017251 seconds (569.61 M allocations: 43.521 GiB, 8.32% gc time, 0.70% compilation time) Test Summary: | Pass Total Time conformgt_by_pos | 2502 2502 4m50.2s 1.419252 seconds (1.13 M allocations: 67.433 MiB, 3.04% gc time, 72.30% compilation time) 1.148007 seconds (1.04 M allocations: 64.020 MiB, 71.63% compilation time) 1.148493 seconds (1.04 M allocations: 62.947 MiB, 71.00% compilation time) 0.451107 seconds (171.06 k allocations: 10.600 MiB, 99.94% compilation time) 0.013903 seconds (5.76 k allocations: 376.758 KiB, 96.00% compilation time) 0.012314 seconds (2.61 k allocations: 165.492 KiB, 95.36% compilation time) Test Summary: | Pass Total Time convert_gt(vcfile) | 11 11 10.2s 1.105836 seconds (928.89 k allocations: 56.227 MiB, 3.44% gc time, 70.72% compilation time) 0.930623 seconds (796.83 k allocations: 50.289 MiB, 2.74% gc time, 62.81% compilation time) Test Summary: | Pass Total Time convert_ht(vcfile) | 6 6 6.5s Test Summary: | Pass Total Time convert_ds | 5 5 1.5s 0.175423 seconds (523.22 k allocations: 30.573 MiB, 10.38% gc time, 14.89% compilation time) 0.658679 seconds (624.15 k allocations: 37.472 MiB, 80.60% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:72 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:176 0.145873 seconds (520.01 k allocations: 32.143 MiB, 8.63% gc time) 0.540565 seconds (580.70 k allocations: 36.159 MiB, 2.22% gc time, 71.95% compilation time) ┌ Warning: Reached end of record! Columns 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:414 ┌ Warning: Reached end of record! Rows 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:501 0.341773 seconds (1.30 M allocations: 54.160 MiB, 44.43% gc time, 3.38% compilation time) 0.802712 seconds (1.41 M allocations: 61.871 MiB, 78.34% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:672 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:787 Test Summary: | Pass Total Time convert to transpose functions | 13 13 7.0s Test Summary: | Pass Total Time record info | 14 14 5.6s Test Summary: | Pass Total Time write VCF | 3 3 3.6s 2.276974 seconds (3.69 M allocations: 264.469 MiB, 3.74% gc time, 52.09% compilation time) 1.115406 seconds (1.36 M allocations: 111.635 MiB, 2.91% gc time, 21.29% compilation time) 1.027396 seconds (3.40 M allocations: 245.710 MiB, 4.35% gc time) Test Summary: | Pass Total Time filter by sample/record index | 9 9 8.2s 1.166907 seconds (582.83 k allocations: 33.075 MiB, 36.69% compilation time) Test Summary: | Pass Total Time mask_gt | 5 5 4.0s Test Summary: | Pass Total Time filter_chr | 4 4 2.1s Progress: 1%|▎ | ETA: 0:15:46 Progress: 1%|▍ | ETA: 0:15:35 Progress: 2%|▋ | ETA: 0:15:09 Progress: 2%|▉ | ETA: 0:15:00 Progress: 3%|█▏ | ETA: 0:14:54 Progress: 3%|█▍ | ETA: 0:14:56 Progress: 4%|█▌ | ETA: 0:14:56 Progress: 4%|█▊ | ETA: 0:14:47 Progress: 5%|██ | ETA: 0:14:43 Progress: 5%|██▎ | ETA: 0:14:37 Progress: 6%|██▌ | ETA: 0:14:38 Progress: 7%|██▊ | ETA: 0:14:33 Progress: 7%|██▉ | ETA: 0:14:29 Progress: 8%|███▏ | ETA: 0:14:26 Progress: 8%|███▍ | ETA: 0:14:19 Progress: 9%|███▋ | ETA: 0:14:15 Progress: 9%|███▊ | ETA: 0:14:09 Progress: 10%|████ | ETA: 0:14:04 Progress: 10%|████▎ | ETA: 0:13:58 Progress: 11%|████▌ | ETA: 0:13:53 Progress: 11%|████▊ | ETA: 0:13:48 Progress: 12%|████▉ | ETA: 0:13:41 Progress: 13%|█████▏ | ETA: 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97%|███████████████████████████████████████▉ | ETA: 0:00:26 Progress: 98%|████████████████████████████████████████ | ETA: 0:00:21 Progress: 98%|████████████████████████████████████████▎| ETA: 0:00:16 Progress: 99%|████████████████████████████████████████▌| ETA: 0:00:11 Progress: 99%|████████████████████████████████████████▊| ETA: 0:00:06 Progress: 99%|█████████████████████████████████████████| ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:15:09 Test Summary: | Pass Total Time AIM selection | 4 4 15m57.9s Test Summary: | Pass Total Time grm | 11 11 8.3s Testing VCFTools tests passed Testing completed after 1933.31s PkgEval succeeded after 2028.45s