Package evaluation to test MITgcm on Julia 1.14.0-DEV.3071 (c76331c927*) started at 2026-08-30T23:56:44.938


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 15.57s


################################################################################
# Installation
#

Installing MITgcm...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [dce5fa8e] + MITgcm v0.5.16
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [179af706] + CFTime v0.2.10
  [336ed68f] + CSV v0.10.17
  [81a5f4ea] + CatViews v1.0.0
  [0b6fb165] + ChunkCodecCore v1.0.2
  [4c0bbee4] + ChunkCodecLibZlib v1.1.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [f6adb021] + ClimateModels v0.3.16
  [944b1d66] + CodecZlib v0.7.9
  [34da2185] + Compat v4.18.1
  [a8cc5b0e] + Crayons v4.2.0
  [9a962f9c] + DataAPI v1.16.0
  [124859b0] + DataDeps v1.0.0
  [a93c6f00] + DataFrames v1.8.2
  [864edb3b] + DataStructures v0.19.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [9c0b9be8] + Dataverse v0.2.8
  [b4f34e82] + Distances v0.10.12
  [4e289a0a] + EnumX v1.0.7
  [411431e0] + Extents v0.1.6
  [5789e2e9] + FileIO v1.20.0
  [48062228] + FilePathsBase v0.9.24
  [c58ffaec] + FortranFiles v0.6.2
  [68eda718] + GeoFormatTypes v0.4.5
  [cf35fbd7] + GeoInterface v1.6.2
  [d7ba0133] + Git v1.5.0
  [c27321d9] + Glob v1.5.0
  [cd3eb016] + HTTP v2.6.6
  [076d061b] + HashArrayMappedTries v0.2.0
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.6.6
  [692b3bcd] + JLLWrappers v1.8.0
  [682c06a0] + JSON v1.7.1
  [b964fa9f] + LaTeXStrings v1.4.1
  [dce5fa8e] + MITgcm v0.5.16
  [1914dd2f] + MacroTools v0.5.16
  [cb8c808f] + MeshArrays v0.5.15
  [e1d29d7a] + Missings v1.2.0
  [b8a86587] + NearestNeighbors v0.4.29
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v2.0.1
⌅ [69de0a69] + Parsers v2.8.7
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [08abe8d2] + PrettyTables v3.4.8
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [802f3686] + Reseau v1.4.1
  [7e506255] + ScopedValues v1.6.2
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.10
  [a2af1166] + SortingAlgorithms v1.2.3
  [90137ffa] + StaticArrays v1.9.19
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.4
  [82ae8749] + StatsAPI v1.8.0
⌅ [892a3eda] + StringManipulation v0.5.0
  [ec057cc2] + StructUtils v2.8.5
  [fd094767] + Suppressor v0.2.8
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.14.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [5c2747f8] + URIs v1.7.0
  [1986cc42] + Unitful v1.28.0
  [ea10d353] + WeakRefStrings v1.4.3
  [76eceee3] + WorkerUtilities v1.6.1
  [a5390f91] + ZipFile v0.10.1
  [2e619515] + Expat_jll v2.8.3+0
  [020c3dae] + Git_LFS_jll v3.7.1+0
  [f8c6e375] + Git_jll v2.55.0+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [9bd350c2] + OpenSSH_jll v10.5.1+0
  [0dad84c5] + ArgTools v1.2.0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.12.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.14.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0
  [deac9b47] + LibCURL_jll v8.21.0+0
  [e37daf67] + LibGit2_jll v1.9.7+0
  [29816b5a] + LibSSH2_jll v1.11.104+0
  [14a3606d] + MozillaCACerts_jll v2026.8.13
  [4536629a] + OpenBLAS_jll v0.3.34+0
  [458c3c95] + OpenSSL_jll v3.5.8+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.70.0+0
  [3f19e933] + p7zip_jll v17.8.2+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.22s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
   9.8 s  ✓ MeshArrays → MeshArraysJLD2Ext
   9.0 s  ✓ MeshArrays → MeshArraysDataDepsExt
  19.5 s  ✓ ClimateModels
  29.0 s  ✓ MITgcm
  17.8 s  ✓ ClimateModels → ClimateModelsNetCDFExt
  44.4 s  ✓ MITgcm → MITgcmNetCDFExt
  6 dependencies successfully precompiled in 135 seconds. 160 already precompiled.

Precompilation completed after 155.04s


################################################################################
# Testing
#

     Testing MITgcm
      Status `/tmp/jl_YHJX4j/Project.toml`
  [dce5fa8e] MITgcm v0.5.16
  [30363a11] NetCDF v0.12.2
  [ade2ca70] Dates v1.11.0
  [44cfe95a] Pkg v1.14.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_YHJX4j/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [179af706] CFTime v0.2.10
  [336ed68f] CSV v0.10.17
  [81a5f4ea] CatViews v1.0.0
  [0b6fb165] ChunkCodecCore v1.0.2
  [4c0bbee4] ChunkCodecLibZlib v1.1.0
  [55437552] ChunkCodecLibZstd v1.0.0
  [f6adb021] ClimateModels v0.3.16
  [944b1d66] CodecZlib v0.7.9
  [34da2185] Compat v4.18.1
  [187b0558] ConstructionBase v1.6.0
  [a8cc5b0e] Crayons v4.2.0
  [9a962f9c] DataAPI v1.16.0
  [124859b0] DataDeps v1.0.0
  [a93c6f00] DataFrames v1.8.2
  [864edb3b] DataStructures v0.19.6
  [e2d170a0] DataValueInterfaces v1.0.0
  [9c0b9be8] Dataverse v0.2.8
  [3c3547ce] DiskArrays v0.4.22
  [b4f34e82] Distances v0.10.12
  [4e289a0a] EnumX v1.0.7
  [411431e0] Extents v0.1.6
  [5789e2e9] FileIO v1.20.0
  [48062228] FilePathsBase v0.9.24
  [c58ffaec] FortranFiles v0.6.2
  [68eda718] GeoFormatTypes v0.4.5
  [cf35fbd7] GeoInterface v1.6.2
  [d7ba0133] Git v1.5.0
  [c27321d9] Glob v1.5.0
  [cd3eb016] HTTP v2.6.6
  [076d061b] HashArrayMappedTries v0.2.0
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.6.6
  [692b3bcd] JLLWrappers v1.8.0
  [682c06a0] JSON v1.7.1
  [8ac3fa9e] LRUCache v1.6.2
  [b964fa9f] LaTeXStrings v1.4.1
  [dce5fa8e] MITgcm v0.5.16
  [3da0fdf6] MPIPreferences v0.1.12
  [1914dd2f] MacroTools v0.5.16
  [cb8c808f] MeshArrays v0.5.15
  [e1d29d7a] Missings v1.2.0
  [b8a86587] NearestNeighbors v0.4.29
  [30363a11] NetCDF v0.12.2
  [6fe1bfb0] OffsetArrays v1.17.0
  [bac558e1] OrderedCollections v2.0.1
⌅ [69de0a69] Parsers v2.8.7
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [08abe8d2] PrettyTables v3.4.8
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [802f3686] Reseau v1.4.1
  [7e506255] ScopedValues v1.6.2
  [6c6a2e73] Scratch v1.3.0
  [91c51154] SentinelArrays v1.4.10
  [a2af1166] SortingAlgorithms v1.2.3
  [90137ffa] StaticArrays v1.9.19
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.4
  [82ae8749] StatsAPI v1.8.0
⌅ [892a3eda] StringManipulation v0.5.0
  [ec057cc2] StructUtils v2.8.5
  [fd094767] Suppressor v0.2.8
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.14.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.7.0
  [1986cc42] Unitful v1.28.0
  [ea10d353] WeakRefStrings v1.4.3
  [76eceee3] WorkerUtilities v1.6.1
  [a5390f91] ZipFile v0.10.1
  [0b7ba130] Blosc_jll v1.21.7+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [2e619515] Expat_jll v2.8.3+0
  [020c3dae] Git_LFS_jll v3.7.1+0
  [f8c6e375] Git_jll v2.55.0+0
  [0234f1f7] HDF5_jll v2.2.1+0
  [e33a78d0] Hwloc_jll v2.14.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [b5ada748] MPIABI_jll v1.0.0+0
  [7cb0a576] MPICH_jll v5.0.1+0
  [f1f71cc9] MPItrampoline_jll v5.5.6+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [7243133f] NetCDF_jll v401.1000.101+0
  [fe0851c0] OpenMPI_jll v5.0.11+0
  [9bd350c2] OpenSSH_jll v10.5.1+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [ffd25f8a] XZ_jll v5.8.3+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0
⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0
⌅ [70f11efc] aws_c_cal_jll v0.9.13+0
⌅ [73048d1d] aws_c_common_jll v0.12.6+0
⌅ [73a04cd5] aws_c_compression_jll v0.3.2+0
⌅ [3254fc65] aws_c_http_jll v0.10.15+0
⌅ [13c41daa] aws_c_io_jll v0.26.3+0
⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0
⌅ [1282aa60] aws_c_sdkutils_jll v0.2.4+1
⌅ [b2a88e68] aws_checksums_jll v0.2.10+0
  [c4b69c83] dlfcn_win32_jll v1.4.2+0
  [477f73a3] libaec_jll v1.1.7+0
  [337d8026] libzip_jll v1.11.3+0
  [9aeb927a] mpif_jll v1.0.0+0
  [cddc5d3d] s2n_tls_jll v1.7.8+0
  [0dad84c5] ArgTools v1.2.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.12.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.7+0
  [deac9b47] LibCURL_jll v8.21.0+0
  [e37daf67] LibGit2_jll v1.9.7+0
  [29816b5a] LibSSH2_jll v1.11.104+0
  [14a3606d] MozillaCACerts_jll v2026.8.13
  [4536629a] OpenBLAS_jll v0.3.34+0
  [458c3c95] OpenSSL_jll v3.5.8+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.70.0+0
  [3f19e933] p7zip_jll v17.8.2+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Sys.islinux=true
Sys.isapple=false
Sys.iswindows=false
Sys.ARCH=x86_64
Download started ...
  See : /tmp/9597abf8-bbee-4254-8856-d6e977d8c5e6/input_folder/
and now completed!
Download started ...
  See : /tmp/9597abf8-bbee-4254-8856-d6e977d8c5e6/input_folder/forcing_baseline2
and now completed!
Download started ...
  See : /tmp/9597abf8-bbee-4254-8856-d6e977d8c5e6/input_folder/
and now completed!
done with monthly
Downloading file : /tmp/costfunction0012
Test Summary: | Pass  Total     Time
ECCO4         |    2      2  4m45.5s
┌ Warning: setting environment variable DATADEPS_ALWAYS_ACCEPT to true
└ @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/System.jl:144
┌ Warning: setting environment variable NETCDF_ROOT to /usr
└ @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/System.jl:144
┌ Warning: setting environment variable MPI_INC_DIR to /usr/lib/x86_64-linux-gnu/openmpi/include
└ @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/System.jl:144

MITgcm system check: Error During Test at /home/pkgeval/.julia/packages/MITgcm/yorTR/test/runtests.jl:62
  Got exception outside of a @test
  ArgumentError: Cannot convert unordered `AbstractDict`s into `OrderedDicts`
  Stacktrace:
   [1] convert(::Core.TypeEgal{OrderedCollections.OrderedDict{Any, Any}}, d::Dict{Symbol, Bool})
     @ OrderedCollections ~/.julia/packages/OrderedCollections/1sijc/src/ordered_dict.jl:105
   [2] MITgcm_config(model::String, configuration::String, inputs::Dict{Symbol, Bool}, outputs::OrderedCollections.OrderedDict{Any, Any}, status::OrderedCollections.OrderedDict{Any, Any}, channel::Channel{Any}, folder::String, ID::Base.UUID)
     @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/Types.jl:54
   [3] MITgcm_config(; model::String, configuration::String, inputs::Dict{Symbol, Bool}, outputs::OrderedCollections.OrderedDict{Any, Any}, status::OrderedCollections.OrderedDict{Any, Any}, channel::Channel{Any}, folder::String, ID::Base.UUID)
     @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/Types.jl:53
   [4] test_run(config::String; exe::String, mpi::Bool, adj::Bool, opt::String)
     @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/ModelSteps.jl:321
   [5] system_check(; setenv::Bool, exe::String, mpi::Bool, adj::Bool, config::String, opt::String)
     @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/System.jl:38
   [6] system_check()
     @ MITgcm ~/.julia/packages/MITgcm/yorTR/src/System.jl:19
   [7] top-level scope
     @ ~/.julia/packages/MITgcm/yorTR/test/runtests.jl:63
   [8] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined]
   [9] macro expansion
     @ ~/.julia/packages/MITgcm/yorTR/test/runtests.jl:73 [inlined]
Test Summary:       | Pass  Error  Total  Time
MITgcm system check |    2      1      3  7.5s
RNG of the outermost testset: Random.Xoshiro(0x8ff238085151681d, 0xf5701b972d1f79a6, 0x7fd273c8a45c0f7e, 0x4b01d582db46508c, 0xfc6ba44d0d685659)
ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MITgcm/yorTR/test/runtests.jl:62

Testing failed after 336.01s

ERROR: LoadError: Package MITgcm errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283
 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
 [7] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:223
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 578.01s: package tests unexpectedly errored