Package evaluation to test SiCell on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-28T08:19:25.194 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.44s ################################################################################ # Installation # Installing SiCell... Resolving package versions... Installed libaom_jll ─────────────────── v3.14.1+0 Installed MultivariateStats ──────────── v0.10.5 Installed Libuuid_jll ────────────────── v2.42.0+0 Installed Qt6Base_jll ────────────────── v6.10.2+2 Installed libass_jll ─────────────────── v0.17.4+0 Installed HarfBuzz_jll ───────────────── v8.5.1+0 Installed s2n_tls_jll ────────────────── v1.7.3+0 Installed InlineStrings ──────────────── v1.4.5 Installed Libtiff_jll ────────────────── v4.7.3+0 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed NearestNeighborDescent ─────── v0.3.8 Installed OrderedCollections ─────────── v2.0.1 Installed Cairo_jll ──────────────────── v1.18.7+0 Installed Xorg_libXinerama_jll ───────── v1.1.7+0 Installed PlotThemes ─────────────────── v3.3.0 Installed NearestNeighbors ───────────── v0.4.29 Installed Graphite2_jll ──────────────── v1.3.16+0 Installed HypothesisTests ────────────── v0.11.8 Installed SentinelArrays ─────────────── v1.4.10 Installed MPIABI_jll ─────────────────── v0.1.5+0 Installed libinput_jll ───────────────── v1.28.1+0 Installed Xorg_libpciaccess_jll ──────── v0.19.0+0 Installed Fontconfig_jll ─────────────── v2.17.1+0 Installed fzf_jll ────────────────────── v0.61.1+0 Installed LsqFit ─────────────────────── v0.15.1 Installed Distances ──────────────────── v0.10.12 Installed SimpleWeightedGraphs ───────── v1.5.1 Installed Widgets ────────────────────── v0.6.8 Installed NaNMath ────────────────────── v1.1.4 Installed QuadGK ─────────────────────── v2.11.3 Installed aws_c_s3_jll ───────────────── v0.11.5+0 Installed OpenSpecFun_jll ────────────── v0.5.6+0 Installed Opus_jll ───────────────────── v1.6.1+0 Installed HDF5_jll ───────────────────── v2.1.2+0 Installed WoodburyMatrices ───────────── v1.1.0 Installed PackageExtensionCompat ─────── v1.0.2 Installed libva_jll ──────────────────── v2.23.0+0 Installed Tables ─────────────────────── v1.14.0 Installed Arpack ─────────────────────── v0.5.4 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed Ogg_jll ────────────────────── v1.3.6+0 Installed NLSolversBase ──────────────── v7.10.0 Installed Unzip ──────────────────────── v0.2.0 Installed Reexport ───────────────────── v1.2.2 Installed InverseFunctions ───────────── v0.1.17 Installed Preferences ────────────────── v1.5.2 Installed LLVMOpenMP_jll ─────────────── v22.1.7+0 Installed LaTeXStrings ───────────────── v1.4.1 Installed SortingAlgorithms ──────────── v1.2.3 Installed Crayons ────────────────────── v4.2.0 Installed libdrm_jll ─────────────────── v2.4.134+0 Installed Xorg_xcb_util_wm_jll ───────── v0.4.2+0 Installed LERC_jll ───────────────────── v4.1.0+0 Installed Xorg_libICE_jll ────────────── v1.1.2+0 Installed FFMPEG ─────────────────────── v0.4.5 Installed Missings ───────────────────── v1.2.0 Installed TableTraits ────────────────── v1.0.1 Installed ADTypes ────────────────────── v1.24.0 Installed DataStructures ─────────────── v0.19.6 Installed Grisu ──────────────────────── v1.0.2 Installed EpollShim_jll ──────────────── v0.0.20230411+1 (no artifacts on this platform) Installed eudev_jll ──────────────────── v3.2.14+0 Installed Format ─────────────────────── v1.3.7 Installed Inflate ────────────────────── v0.1.5 Installed FillArrays ─────────────────── v1.17.0 Installed libaec_jll ─────────────────── v1.1.7+0 Installed MacroTools ─────────────────── v0.5.16 Installed aws_c_auth_jll ─────────────── v0.9.6+0 Installed DiffResults ────────────────── v1.1.0 Installed StatsBase ──────────────────── v0.34.13 Installed ArnoldiMethod ──────────────── v0.4.0 Installed DelimitedFiles ─────────────── v1.9.1 Installed AbstractTrees ──────────────── v0.4.5 Installed CodecZlib ──────────────────── v0.7.9 Installed Xorg_xcb_util_jll ──────────── v0.4.1+0 Installed aws_c_common_jll ───────────── v0.12.6+0 Installed x264_jll ───────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed UnicodeFun ─────────────────── v0.4.1 Installed ArrayInterface ─────────────── v7.30.0 Installed Observables ────────────────── v0.5.5 Installed Clustering ─────────────────── v0.15.8 Installed KrylovKit ──────────────────── v0.10.4 Installed mtdev_jll ──────────────────── v1.1.7+0 Installed Xorg_libXfixes_jll ─────────── v6.0.2+0 Installed Qt6ShaderTools_jll ─────────── v6.10.2+1 Installed mpif_jll ───────────────────── v0.1.7+0 Installed CommonSubexpressions ───────── v0.3.1 Installed DataValueInterfaces ────────── v1.0.0 Installed StructUtils ────────────────── v2.8.5 Installed Expat_jll ──────────────────── v2.8.3+0 Installed Libffi_jll ─────────────────── v3.4.7+0 Installed IntegerMathUtils ───────────── v0.1.4 Installed Pixman_jll ─────────────────── v0.46.4+0 Installed SimpleTraits ───────────────── v0.9.6 Installed libdecor_jll ───────────────── v0.2.2+0 Installed IrrationalConstants ────────── v0.2.6 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed libpng_jll ─────────────────── v1.6.58+0 Installed ColorVectorSpace ───────────── v0.11.0 Installed Contour ────────────────────── v0.6.3 Installed Interpolations ─────────────── v0.16.3 Installed Roots ──────────────────────── v3.0.7 Installed aws_c_io_jll ───────────────── v0.26.3+0 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.1+0 Installed Hwloc_jll ──────────────────── v2.14.0+0 Installed StableRNGs ─────────────────── v1.0.4 Installed OpenMPI_jll ────────────────── v5.0.11+0 Installed libfdk_aac_jll ─────────────── v2.0.4+0 Installed Scratch ────────────────────── v1.3.0 Installed FFMPEG_jll ─────────────────── v8.1.2+0 Installed Qt6Svg_jll ─────────────────── v6.10.2+0 Installed Setfield ───────────────────── v1.1.2 Installed PooledArrays ───────────────── v1.4.3 Installed PDMats ─────────────────────── v0.11.41 Installed Qt6Declarative_jll ─────────── v6.10.2+2 Installed GZip ───────────────────────── v0.6.2 Installed aws_c_compression_jll ──────── v0.3.2+0 Installed WorkerUtilities ────────────── v1.6.1 Installed Plots ──────────────────────── v1.41.7 Installed TableOperations ────────────── v1.2.0 Installed CompositionsBase ───────────── v0.1.2 Installed DocStringExtensions ────────── v0.9.5 Installed ColorSchemes ───────────────── v3.31.0 Installed DifferentiationInterface ───── v0.7.21 Installed CommonSolve ────────────────── v0.2.14 Installed Rmath_jll ──────────────────── v0.5.2+0 Installed ForwardDiff ────────────────── v1.4.5 Installed KernelDensity ──────────────── v0.6.12 Installed StatsModels ────────────────── v0.7.10 Installed Ghostscript_jll ────────────── v9.55.1+0 Installed RelocatableFolders ─────────── v1.0.1 Installed MPICH_jll ──────────────────── v5.0.1+0 Installed AliasTables ────────────────── v1.1.3 Installed CSV ────────────────────────── v0.10.17 Installed JLFzf ──────────────────────── v0.1.11 Installed aws_c_cal_jll ──────────────── v0.9.13+0 Installed MicrosoftMPI_jll ───────────── v10.1.4+3 (no artifacts on this platform) Installed RecipesBase ────────────────── v1.3.4 Installed IteratorInterfaceExtensions ── v1.0.0 Installed DataAPI ────────────────────── v1.16.0 Installed ShiftedArrays ──────────────── v2.0.0 Installed Combinatorics ──────────────── v1.1.0 Installed Xorg_libXi_jll ─────────────── v1.8.4+0 Installed StaticArrays ───────────────── v1.9.19 Installed libevdev_jll ───────────────── v1.13.4+0 Installed InvertedIndices ────────────── v1.3.1 Installed Measures ───────────────────── v0.3.3 Installed Colors ─────────────────────── v0.13.1 Installed Wayland_jll ────────────────── v1.24.0+0 Installed StaticArraysCore ───────────── v1.4.4 Installed Xorg_libxkbfile_jll ────────── v1.2.0+0 Installed Latexify ───────────────────── v0.16.12 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed AbstractFFTs ───────────────── v1.5.0 Installed StringManipulation ─────────── v0.5.0 Installed Glib_jll ───────────────────── v2.88.3+0 Installed AxisAlgorithms ─────────────── v1.1.0 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed ColorTypes ─────────────────── v0.12.1 Installed Requires ───────────────────── v1.3.1 Installed LogExpFunctions ────────────── v1.0.1 Installed DiffRules ──────────────────── v1.16.0 Installed Vulkan_Loader_jll ──────────── v1.3.243+0 Installed Parsers ────────────────────── v2.8.7 Installed Xorg_xcb_util_cursor_jll ───── v0.1.6+0 Installed JSON ───────────────────────── v1.7.1 Installed PrettyTables ───────────────── v3.4.8 Installed SiCell ─────────────────────── v0.1.1 Installed Distributions ──────────────── v0.25.131 Installed Gamma ──────────────────────── v1.2.0 Installed FiniteDiff ─────────────────── v2.33.0 Installed StatsFuns ──────────────────── v2.2.1 Installed Arpack_jll ─────────────────── v3.5.2+0 Installed StatsPlots ─────────────────── v0.15.8 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.10+0 Installed Rmath ──────────────────────── v0.9.0 Installed Xorg_xkeyboard_config_jll ──── v2.47.0+2 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed MatrixMarket ───────────────── v0.5.2 Installed MultipleTesting ────────────── v0.6.0 Installed Xorg_libSM_jll ─────────────── v1.2.6+0 Installed VectorInterface ────────────── v0.6.0 Installed DataFrames ─────────────────── v1.8.2 Installed WeakRefStrings ─────────────── v1.4.3 Installed JLLWrappers ────────────────── v1.8.0 Installed aws_c_http_jll ─────────────── v0.10.15+0 Installed Pango_jll ──────────────────── v1.58.0+0 Installed Accessors ──────────────────── v0.1.45 Installed GR_jll ─────────────────────── v0.73.27+0 Installed XZ_jll ─────────────────────── v5.8.3+0 Installed x265_jll ───────────────────── v4.1.0+0 Installed RecipesPipeline ────────────── v0.6.12 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed Primes ─────────────────────── v0.5.7 Installed FilePathsBase ──────────────── v0.9.24 Installed Graphs ─────────────────────── v1.14.0 Installed GLM ────────────────────────── v1.9.5 Installed JpegTurbo_jll ──────────────── v3.2.0+1 Installed Adapt ──────────────────────── v4.7.0 Installed HypergeometricFunctions ────── v0.3.30 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed FFTA ───────────────────────── v0.3.1 Installed Libmount_jll ───────────────── v2.42.0+0 Installed Xorg_libX11_jll ────────────── v1.8.13+0 Installed PlotUtils ──────────────────── v1.4.4 Installed Compat ─────────────────────── v4.18.1 Installed ConstructionBase ───────────── v1.6.0 Installed TranscodingStreams ─────────── v0.11.3 Installed GR ─────────────────────────── v0.73.27 Installed StatsAPI ───────────────────── v1.8.0 Installed Statistics ─────────────────── v1.11.1 Installed TensorCore ─────────────────── v0.1.1 Installed dlfcn_win32_jll ────────────── v1.4.2+0 (no artifacts on this platform) Installed Xorg_xcb_util_image_jll ────── v0.4.1+0 Installed OffsetArrays ───────────────── v1.17.0 Installed UMAP ───────────────────────── v0.1.11 Installed PrecompileTools ────────────── v1.3.4 Installed GLFW_jll ───────────────────── v3.5.1+0 Installed Ratios ─────────────────────── v0.4.5 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed xkbcommon_jll ──────────────── v1.13.0+0 Installed GettextRuntime_jll ─────────── v0.22.4+0 Installed LAME_jll ───────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed ChainRulesCore ─────────────── v1.26.1 Installed libvorbis_jll ──────────────── v1.3.8+0 Installed MuladdMacro ────────────────── v0.2.7 Installed FixedPointNumbers ──────────── v0.8.6 Installed SpecialFunctions ───────────── v2.9.0 Installed PtrArrays ──────────────────── v1.4.0 Installed aws_checksums_jll ──────────── v0.2.10+0 Installed aws_c_sdkutils_jll ─────────── v0.2.4+1 Installed XML2_jll ───────────────────── v2.13.9+0 Installed FreeType2_jll ──────────────── v2.14.3+1 Installed MPIPreferences ─────────────── v0.1.12 Installed Showoff ────────────────────── v1.0.3 Installed HDF5 ───────────────────────── v0.17.3 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed Xorg_libXrandr_jll ─────────── v1.5.6+0 Installed Xorg_libXext_jll ───────────── v1.3.8+0 Installed Qt6Wayland_jll ─────────────── v6.10.2+1 Installed MPItrampoline_jll ──────────── v5.5.6+0 Installing 95 artifacts Installed artifact Xorg_xcb_util_keysyms 14.3 KiB Installed artifact aws_c_cal 948.2 KiB Installed artifact eudev 2.3 MiB Installed artifact Xorg_xcb_util_cursor 24.2 KiB Installed artifact LERC 220.3 KiB Installed artifact aws_c_auth 111.4 KiB Installed artifact Xorg_xkbcomp 230.5 KiB Installed artifact Xorg_libxcb 1.3 MiB Installed artifact HDF5 5.2 MiB Installed artifact aws_c_common 237.0 KiB Installed artifact GettextRuntime 345.6 KiB Installed artifact LAME 243.9 KiB Installed artifact aws_c_compression 12.6 KiB Installed artifact Rmath 111.3 KiB Installed artifact Xorg_libXcursor 137.4 KiB Installed artifact Ogg 213.4 KiB Installed artifact Xorg_xtrans 39.5 KiB Installed artifact libfdk_aac 2.4 MiB Installed artifact FriBidi 67.6 KiB Installed artifact Xorg_libX11 2.3 MiB Installed artifact libdrm 304.7 KiB Installed artifact XML2 2.0 MiB Installed artifact Wayland 266.5 KiB Installed artifact Libmount 3.4 MiB Installed artifact Xorg_libpciaccess 23.4 KiB Installed artifact aws_checksums 83.3 KiB Installed artifact Pango 1.3 MiB Installed artifact libvorbis 226.3 KiB Installed artifact xkbcommon 252.5 KiB Installed artifact JpegTurbo 713.4 KiB Installed artifact GR 15.8 MiB Installed artifact Fontconfig 443.8 KiB Installed artifact Xorg_libXi 499.8 KiB Installed artifact GLFW 162.5 KiB Installed artifact Xorg_libSM 104.8 KiB Installed artifact mtdev 55.5 KiB Installed artifact Libglvnd 482.2 KiB Installed artifact Vulkan_Loader 146.2 KiB Installed artifact libinput 555.0 KiB Installed artifact Libtiff 1.7 MiB Installed artifact HarfBuzz 1.2 MiB Installed artifact Expat 255.9 KiB Installed artifact Libiconv 1022.9 KiB Installed artifact Pixman 343.0 KiB Installed artifact aws_c_sdkutils 48.8 KiB Installed artifact x264 908.7 KiB Installed artifact Xorg_libXau 25.8 KiB Installed artifact Opus 792.2 KiB Installed artifact Libffi 39.2 KiB Installed artifact Qt6ShaderTools 1.7 MiB Installed artifact libass 361.1 KiB Installed artifact x265 1.1 MiB Installed artifact libaec 31.0 KiB Installed artifact aws_c_io 153.0 KiB Installed artifact Xorg_libxkbfile 81.0 KiB Installed artifact Dbus 398.5 KiB Installed artifact FreeType2 1.2 MiB Installed artifact Bzip2 152.8 KiB Installed artifact Hwloc 3.0 MiB Installed artifact libaom 3.9 MiB Installed artifact Xorg_libXrender 174.0 KiB Installed artifact Xorg_xkeyboard_config 375.9 KiB Installed artifact Xorg_xcb_util_renderutil 22.4 KiB Installed artifact Xorg_libXfixes 41.4 KiB Installed artifact aws_c_s3 123.8 KiB Installed artifact aws_c_http 218.9 KiB Installed artifact libpng 234.7 KiB Installed artifact Arpack 110.5 KiB Installed artifact libva 187.1 KiB Installed artifact OpenSpecFun 105.4 KiB Installed artifact fzf 3.0 MiB Installed artifact FFMPEG 10.2 MiB Installed artifact Xorg_libXdmcp 49.9 KiB Installed artifact s2n_tls 1.4 MiB Installed artifact Glib 4.2 MiB Installed artifact XZ 1018.2 KiB Installed artifact Ghostscript 30.0 MiB Installed artifact Xorg_libXinerama 21.7 KiB Installed artifact libevdev 91.2 KiB Installed artifact Xorg_xcb_util 26.3 KiB Installed artifact Xorg_libXext 187.3 KiB Installed artifact Graphite2 109.8 KiB Installed artifact LLVMOpenMP 573.2 KiB Installed artifact Xorg_xcb_util_image 33.8 KiB Installed artifact Xorg_libXrandr 69.9 KiB Installed artifact Xorg_libICE 254.5 KiB Installed artifact Cairo 1.5 MiB Installed artifact Qt6Base 17.1 MiB Installed artifact libdecor 36.5 KiB Installed artifact Xorg_xcb_util_wm 95.5 KiB Installed artifact Qt6Svg 303.6 KiB Installed artifact MPICH 5.8 MiB Installed artifact Qt6Wayland 930.6 KiB Installed artifact Libuuid 1.9 MiB Installed artifact Qt6Declarative 15.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [95f86b30] + SiCell v0.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.30.0 [13072b0f] + AxisAlgorithms v1.1.0 [336ed68f] + CSV v0.10.17 [d360d2e6] + ChainRulesCore v1.26.1 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.9 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.21 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [c87230d0] + FFMPEG v0.4.5 [b86e33f2] + FFTA v0.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.33.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.4.5 [38e38edf] + GLM v1.9.5 [28b8d3ca] + GR v0.73.27 ⌅ [92fee26a] + GZip v0.6.2 [a0844989] + Gamma v1.2.0 [86223c79] + Graphs v1.14.0 [42e2da0e] + Grisu v1.0.2 [f67ccb44] + HDF5 v0.17.3 [34004b35] + HypergeometricFunctions v0.3.30 [09f84164] + HypothesisTests v0.11.8 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.4 [a98d9a8b] + Interpolations v0.16.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.7.1 [5ab0869b] + KernelDensity v0.6.12 [0b1a1467] + KrylovKit v0.10.4 [b964fa9f] + LaTeXStrings v1.4.1 [23fbe1c1] + Latexify v0.16.12 [2ab3a3ac] + LogExpFunctions v1.0.1 ⌅ [2fda8390] + LsqFit v0.15.1 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.7 [f8716d33] + MultipleTesting v0.6.0 [6f286f6a] + MultivariateStats v0.10.5 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 ⌅ [dd2c4c9e] + NearestNeighborDescent v0.3.8 [b8a86587] + NearestNeighbors v0.4.29 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 [65ce6f38] + PackageExtensionCompat v1.0.2 ⌅ [69de0a69] + Parsers v2.8.7 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.7 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [992d4aef] + Showoff v1.0.3 [95f86b30] + SiCell v0.1.1 [699a6c99] + SimpleTraits v0.9.6 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [3eaba693] + StatsModels v0.7.10 [f3b207a7] + StatsPlots v0.15.8 [892a3eda] + StringManipulation v0.5.0 [ec057cc2] + StructUtils v2.8.5 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [c4f8c510] + UMAP v0.1.11 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [409d34a3] + VectorInterface v0.6.0 [ea10d353] + WeakRefStrings v1.4.3 [cc8bc4a8] + Widgets v0.6.8 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.7+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.8.3+0 ⌅ [b22a6f82] + FFMPEG_jll v8.1.2+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.5.1+0 [d2c73de3] + GR_jll v0.73.27+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [7746bdde] + Glib_jll v2.88.3+0 [3b182d85] + Graphite2_jll v1.3.16+0 ⌅ [0234f1f7] + HDF5_jll v2.1.2+0 ⌅ [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [aacddb02] + JpegTurbo_jll v3.2.0+1 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v22.1.7+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.3+0 [38a345b3] + Libuuid_jll v2.42.0+0 ⌅ [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e7412a2a] + Ogg_jll v1.3.6+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.1+0 [36c8627f] + Pango_jll v1.58.0+0 [30392449] + Pixman_jll v0.46.4+0 [c0090381] + Qt6Base_jll v6.10.2+2 [629bc702] + Qt6Declarative_jll v6.10.2+2 [ce943373] + Qt6ShaderTools_jll v6.10.2+1 [6de9746b] + Qt6Svg_jll v6.10.2+0 [e99dba38] + Qt6Wayland_jll v6.10.2+1 [f50d1b31] + Rmath_jll v0.5.2+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.4+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.47.0+2 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 ⌃ [70f11efc] + aws_c_cal_jll v0.9.13+0 ⌅ [73048d1d] + aws_c_common_jll v0.12.6+0 ⌃ [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.15+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 ⌃ [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [35ca27e7] + eudev_jll v3.2.14+0 ⌅ [214eeab7] + fzf_jll v0.61.1+0 [477f73a3] + libaec_jll v1.1.7+0 [a4ae2306] + libaom_jll v3.14.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [8e53e030] + libdrm_jll v2.4.134+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 ⌅ [9aeb927a] + mpif_jll v0.1.7+0 [009596ad] + mtdev_jll v1.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 35.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.1 s ✓ MacroTools 1.4 s ✓ InlineStrings 0.5 s ✓ Reexport 0.6 s ✓ TensorCore 0.7 s ✓ ConstructionBase 2.0 s ✓ IrrationalConstants 0.7 s ✓ Measures 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.8 s ✓ Format 0.9 s ✓ Observables 1.8 s ✓ Combinatorics 0.8 s ✓ Inflate 0.6 s ✓ Contour 0.8 s ✓ TranscodingStreams 0.6 s ✓ LaTeXStrings 0.8 s ✓ Statistics 0.6 s ✓ StaticArraysCore 0.7 s ✓ StableRNGs 0.5 s ✓ PtrArrays 0.8 s ✓ VectorInterface 0.9 s ✓ Grisu 0.6 s ✓ Adapt 0.8 s ✓ DataAPI 0.6 s ✓ InvertedIndices 1.0 s ✓ InverseFunctions 0.6 s ✓ CompositionsBase 0.6 s ✓ ShiftedArrays 1.0 s ✓ AbstractTrees 0.7 s ✓ AbstractFFTs 0.7 s ✓ WorkerUtilities 1.9 s ✓ FillArrays 0.7 s ✓ IntegerMathUtils 1.0 s ✓ OrderedCollections 1.1 s ✓ DocStringExtensions 1.1 s ✓ Unzip 2.0 s ✓ OffsetArrays 0.5 s ✓ IteratorInterfaceExtensions 0.5 s ✓ PackageExtensionCompat 1.9 s ✓ Crayons 0.7 s ✓ NaNMath 0.8 s ✓ Requires 0.9 s ✓ GZip 0.9 s ✓ DelimitedFiles 1.6 s ✓ WoodburyMatrices 1.3 s ✓ Scratch 1.8 s ✓ SentinelArrays 1.5 s ✓ StructUtils 3.3 s ✓ PDMats 0.9 s ✓ Compat 1.8 s ✓ Preferences 4.2 s ✓ UnicodeFun 1.0 s ✓ CommonSubexpressions 2.7 s ✓ SimpleTraits 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.7 s ✓ CodecZlib 2.1 s ✓ Statistics → SparseArraysExt 2.6 s ✓ FixedPointNumbers 1.1 s ✓ Distances 0.6 s ✓ DiffResults 0.8 s ✓ AliasTables 0.9 s ✓ Showoff 1.2 s ✓ ArrayInterface 1.8 s ✓ Adapt → AdaptSparseArraysExt 0.7 s ✓ Missings 0.8 s ✓ PooledArrays 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.7 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.3 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Primes 3.6 s ✓ DataStructures 1.2 s ✓ LogExpFunctions 0.6 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.5 s ✓ TableTraits 3.3 s ✓ KrylovKit 0.6 s ✓ Ratios 1.5 s ✓ AxisAlgorithms 1.3 s ✓ RelocatableFolders 0.9 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ PrecompileTools 1.1 s ✓ JLLWrappers 1.6 s ✓ MPIPreferences 1.9 s ✓ Setfield 1.5 s ✓ MatrixMarket 2.4 s ✓ ColorTypes 1.4 s ✓ Distances → DistancesSparseArraysExt 0.9 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.5 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 3.9 s ✓ Accessors 0.8 s ✓ SortingAlgorithms 1.8 s ✓ QuadGK 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.5 s ✓ Gamma 1.6 s ✓ Tables 0.6 s ✓ Ratios → RatiosFixedPointNumbersExt 2.1 s ✓ ChainRulesCore 1.7 s ✓ FilePathsBase 6.3 s ✓ StringManipulation 1.6 s ✓ CommonSolve 13.4 s ✓ StaticArrays 1.7 s ✓ MuladdMacro 2.8 s ✓ RecipesBase 3.1 s ✓ ADTypes 10.2 s ✓ Parsers 1.3 s ✓ Libffi_jll 1.6 s ✓ Xorg_libICE_jll 1.8 s ✓ eudev_jll 1.1 s ✓ mtdev_jll 1.2 s ✓ Bzip2_jll 1.2 s ✓ XZ_jll 1.2 s ✓ Rmath_jll 0.8 s ✓ MicrosoftMPI_jll 1.6 s ✓ OpenSpecFun_jll 1.1 s ✓ Xorg_xtrans_jll 1.2 s ✓ Opus_jll 1.0 s ✓ x265_jll 1.1 s ✓ aws_c_common_jll 1.4 s ✓ fzf_jll 1.3 s ✓ libpng_jll 1.4 s ✓ Arpack_jll 0.9 s ✓ EpollShim_jll 1.2 s ✓ Libmount_jll 1.1 s ✓ libfdk_aac_jll 1.1 s ✓ Libuuid_jll 1.2 s ✓ FriBidi_jll 1.1 s ✓ LERC_jll 1.2 s ✓ Xorg_libXau_jll 0.9 s ✓ dlfcn_win32_jll 1.1 s ✓ Ogg_jll 1.2 s ✓ libevdev_jll 1.4 s ✓ LAME_jll 1.6 s ✓ Graphite2_jll 1.6 s ✓ libaec_jll 1.2 s ✓ x264_jll 1.2 s ✓ Xorg_libpciaccess_jll 1.3 s ✓ LLVMOpenMP_jll 1.1 s ✓ Libiconv_jll 1.1 s ✓ s2n_tls_jll 1.1 s ✓ libaom_jll 1.3 s ✓ Xorg_libXdmcp_jll 1.1 s ✓ Expat_jll 1.1 s ✓ JpegTurbo_jll 4.2 s ✓ MPItrampoline_jll 1.1 s ✓ ColorTypes → StyledStringsExt 5.1 s ✓ Colors 1.5 s ✓ ColorVectorSpace 1.0 s ✓ FiniteDiff 2.0 s ✓ Accessors → TestExt 2.4 s ✓ Accessors → LinearAlgebraExt 4.9 s ✓ StatsBase 2.1 s ✓ HypergeometricFunctions 1.2 s ✓ TableOperations 1.0 s ✓ StructUtils → StructUtilsTablesExt 1.5 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ VectorInterface → VectorInterfaceChainRulesCoreExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.6 s ✓ Distances → DistancesChainRulesCoreExt 0.6 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 3.0 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.7 s ✓ KrylovKit → KrylovKitChainRulesCoreExt 2.8 s ✓ FilePathsBase → FilePathsBaseTestExt 0.9 s ✓ FilePathsBase → FilePathsBaseMmapExt 40.6 s ✓ PrettyTables 2.9 s ✓ ArnoldiMethod 1.3 s ✓ StaticArrays → StaticArraysStatisticsExt 1.6 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.4 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.6 s ✓ VectorInterface → VectorInterfaceStaticArraysExt 1.5 s ✓ Adapt → AdaptStaticArraysExt 2.3 s ✓ FillArrays → FillArraysStaticArraysExt 1.5 s ✓ Accessors → StaticArraysExt 2.3 s ✓ FFTA 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 0.8 s ✓ ADTypes → ADTypesChainRulesCoreExt 2.1 s ✓ DifferentiationInterface 8.4 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 1.1 s ✓ Xorg_libSM_jll 1.1 s ✓ FreeType2_jll 1.4 s ✓ Rmath 4.8 s ✓ SpecialFunctions 1.1 s ✓ aws_c_cal_jll 1.1 s ✓ aws_c_sdkutils_jll 1.1 s ✓ aws_checksums_jll 1.3 s ✓ aws_c_compression_jll 2.4 s ✓ JLFzf 1.2 s ✓ Arpack 1.8 s ✓ libvorbis_jll 1.2 s ✓ libinput_jll 1.7 s ✓ libdrm_jll 1.3 s ✓ Pixman_jll 1.3 s ✓ XML2_jll 1.3 s ✓ GettextRuntime_jll 1.4 s ✓ Xorg_libxcb_jll 1.4 s ✓ Dbus_jll 1.3 s ✓ Wayland_jll 1.4 s ✓ Ghostscript_jll 1.4 s ✓ Libtiff_jll 2.0 s ✓ Widgets 8.9 s ✓ ColorSchemes 1.3 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 1.4 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 5.4 s ✓ Roots 1.7 s ✓ PDMats → StatsBaseExt 77.7 s ✓ DataFrames 7.6 s ✓ NearestNeighbors 10.1 s ✓ Graphs 4.8 s ✓ Interpolations 1.4 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1.5 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.9 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2.4 s ✓ WeakRefStrings 1.5 s ✓ Fontconfig_jll 3.5 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.0 s ✓ DiffRules 1.4 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.2 s ✓ StatsFuns 1.4 s ✓ aws_c_io_jll 1.2 s ✓ Hwloc_jll 1.3 s ✓ Glib_jll 1.2 s ✓ Xorg_xcb_util_jll 1.3 s ✓ Xorg_libX11_jll 5.7 s ✓ Latexify 16.2 s ✓ PlotUtils 1.0 s ✓ Roots → RootsChainRulesCoreExt 4.3 s ✓ Clustering 3.7 s ✓ SimpleWeightedGraphs 4.2 s ✓ Graphs → GraphsSharedArraysExt 4.3 s ✓ NearestNeighborDescent 26.9 s ✓ CSV 6.6 s ✓ ForwardDiff 3.1 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 0.9 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 5.2 s ✓ StatsModels 1.5 s ✓ aws_c_http_jll 1.3 s ✓ MPICH_jll 4.2 s ✓ OpenMPI_jll 4.2 s ✓ MPIABI_jll 1.3 s ✓ Xorg_xcb_util_renderutil_jll 1.7 s ✓ Xorg_xcb_util_wm_jll 1.3 s ✓ Xorg_xcb_util_image_jll 1.3 s ✓ Xorg_xcb_util_keysyms_jll 2.1 s ✓ Xorg_libXfixes_jll 1.1 s ✓ Xorg_libXrender_jll 1.3 s ✓ Xorg_libXext_jll 1.4 s ✓ Xorg_libxkbfile_jll 2.8 s ✓ Latexify → SparseArraysExt 7.6 s ✓ Latexify → DataFramesExt 8.9 s ✓ PlotThemes 7.6 s ✓ RecipesPipeline 2.0 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 1.6 s ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1.5 s ✓ Roots → RootsForwardDiffExt 3.7 s ✓ Interpolations → InterpolationsForwardDiffExt 9.9 s ✓ Distributions 1.3 s ✓ aws_c_auth_jll 4.5 s ✓ mpif_jll 1.3 s ✓ Xorg_xcb_util_cursor_jll 1.1 s ✓ Xorg_libXcursor_jll 1.4 s ✓ Xorg_libXrandr_jll 1.6 s ✓ Xorg_libXinerama_jll 1.4 s ✓ Xorg_libXi_jll 2.1 s ✓ Cairo_jll 1.5 s ✓ libva_jll 1.7 s ✓ Libglvnd_jll 1.5 s ✓ Xorg_xkbcomp_jll 2.9 s ✓ NLSolversBase 7.3 s ✓ GLM 4.3 s ✓ MultipleTesting 4.6 s ✓ Distributions → DistributionsTestExt 3.8 s ✓ Distributions → DistributionsChainRulesCoreExt 4.7 s ✓ HypothesisTests 3.8 s ✓ MultivariateStats 1.1 s ✓ aws_c_s3_jll 1.4 s ✓ HarfBuzz_jll 0.9 s ✓ Xorg_xkeyboard_config_jll 4.4 s ✓ LsqFit 4.2 s ✓ KernelDensity 1.4 s ✓ HDF5_jll 0.9 s ✓ libass_jll 1.0 s ✓ Pango_jll 0.9 s ✓ xkbcommon_jll 5.3 s ✓ UMAP 11.7 s ✓ HDF5 1.4 s ✓ FFMPEG_jll 1.1 s ✓ Vulkan_Loader_jll 1.4 s ✓ libdecor_jll 0.9 s ✓ FFMPEG 1.4 s ✓ Qt6Base_jll 1.5 s ✓ GLFW_jll 1.3 s ✓ Qt6ShaderTools_jll 1.3 s ✓ Qt6Svg_jll 1.6 s ✓ GR_jll 1.5 s ✓ Qt6Declarative_jll 1.4 s ✓ Qt6Wayland_jll 5.4 s ✓ GR 118.9 s ✓ Plots 19.2 s ✓ StatsPlots 30.0 s ✓ SiCell 306 dependencies successfully precompiled in 925 seconds. 41 already precompiled. Precompilation completed after 907.62s ################################################################################ # Testing # Testing SiCell Status `/tmp/jl_AtZVh5/Project.toml` [7d9fca2a] Arpack v0.5.4 [336ed68f] CSV v0.10.17 [aaaa29a8] Clustering v0.15.8 [a93c6f00] DataFrames v1.8.2 [31c24e10] Distributions v0.25.131 [38e38edf] GLM v1.9.5 ⌅ [92fee26a] GZip v0.6.2 [86223c79] Graphs v1.14.0 [f67ccb44] HDF5 v0.17.3 [09f84164] HypothesisTests v0.11.8 [0b1a1467] KrylovKit v0.10.4 [4d4711f2] MatrixMarket v0.5.2 [f8716d33] MultipleTesting v0.6.0 [6f286f6a] MultivariateStats v0.10.5 [b8a86587] NearestNeighbors v0.4.29 [91a5bcdd] Plots v1.41.7 [95f86b30] SiCell v0.1.1 [47aef6b3] SimpleWeightedGraphs v1.5.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.13 [f3b207a7] StatsPlots v0.15.8 ⌅ [c4f8c510] UMAP v0.1.11 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status 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CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Successfully subsetted to 3 cells. QC Metrics calculated: avg 30.0 genes/cell. Filtering complete: Kept 50 / 50 cells (100.0%). Normalizing data (scale_factor=10000.0)... Normalization complete. Finding variable features... Found 20 highly variable genes. Running PCA on normalized (sparse) data... PCA complete. Stored 5 dimensions in 'pca'. Preprocessing (QC -> Norm -> PCA): Error During Test at /home/pkgeval/.julia/packages/SiCell/aF8cA/test/runtests.jl:75 Got exception outside of a @test MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] scale_data!(obj::SingleCellObject; features::Nothing, clip_value::Float64) @ SiCell ~/.julia/packages/SiCell/aF8cA/src/analysis.jl:133 [10] scale_data!(obj::SingleCellObject) @ SiCell ~/.julia/packages/SiCell/aF8cA/src/analysis.jl:98 [11] top-level scope @ ~/.julia/packages/SiCell/aF8cA/test/runtests.jl:59 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [13] macro expansion @ ~/.julia/packages/SiCell/aF8cA/test/runtests.jl:76 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [15] macro expansion @ ~/.julia/packages/SiCell/aF8cA/test/runtests.jl:97 [inlined] Normalizing data (scale_factor=10000.0)... Normalization complete. Finding variable features... Found 50 highly variable genes. Running PCA on normalized (sparse) data... PCA complete. Stored 10 dimensions in 'pca'. Building KNN graph (k=5, dims=10)... KNN graph built for 100 cells with 350 edges. Running K-Means clustering (k=3)... Clustering complete. Found 3 clusters. Running graph clustering (method=louvain)... Clustering complete. Found 8 clusters. Running graph clustering (method=label_propagation)... Clustering complete. Found 2 clusters. Running UMAP (n_dims=2, k=15, epochs=10)... ┌ Warning: `pairwise!(r::AbstractMatrix, dist::PreMetric, a::AbstractMatrix; dims::Union{Nothing, Integer} = nothing)` is deprecated, use `pairwise!(dist, r, a; dims = dims)` instead. │ caller = knn_search(X::LinearAlgebra.Transpose{Float64, SubArray{Float64, 2, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, UnitRange{Int64}}, true}}, k::Int64, metric::Distances.Euclidean, ::Val{:pairwise}) at utils.jl:63 [inlined] └ @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/utils.jl:63 UMAP complete. Stored in obj.reductions["umap"]. Merging datasets... Found 100 common genes. Merge complete. Total cells: 100 Normalizing data (scale_factor=10000.0)... Normalization complete. Finding variable features... Found 50 highly variable genes. Running PCA on normalized (sparse) data... PCA complete. Stored 10 dimensions in 'pca'. Running Harmony Integration (k=10, iter=2)... Harmony complete. Corrected embedding stored in reductions["harmony"]. Running BBKNN graph construction... BBKNN complete. Graph stored in obj.graphs["neighbors"]. 🔍 Mixing Score: 0.5606 (Target ≈ 0.5) Normalizing data (scale_factor=10000.0)... Normalization complete. Finding variable features... Found 50 highly variable genes. Running PCA on normalized (sparse) data... PCA complete. Stored 10 dimensions in 'pca'. Building KNN graph (k=10, dims=10)... KNN graph built for 50 cells with 339 edges. Constructing Diffusion Map from 50 cells... Using existing neighbor graph... Diffusion Map complete. Components: 5 Computing DC1-based continuous pseudotime... Root cell 1 pseudotime: 0.2524 Unique values: 50 (continuous = good) Range: 0.0 – 1.0 Pseudotime stored in meta_data['dpt'] (method=dc1). Normalizing data (scale_factor=10000.0)... Normalization complete. Calculating statistics for 100 genes across 3 clusters using 1 threads... Adjusting p-values using Benjamini-Hochberg... Normalizing data (scale_factor=10000.0)... Normalization complete. Calculating statistics for 100 genes across 3 clusters using 1 threads... Adjusting p-values using Benjamini-Hochberg... CellMarker 2.0 loaded: 8 entries, 2 cell types, 1 species. Calculating annotation scores for 0 clusters using 1 threads... Annotation complete. Labels stored in 'cell_type'. Normalizing data (scale_factor=10000.0)... Normalization complete. Finding variable features... Found 50 highly variable genes. Running PCA on normalized (sparse) data... PCA complete. Stored 10 dimensions in 'pca'. Running UMAP (n_dims=2, k=15, epochs=5)... UMAP complete. Stored in obj.reductions["umap"]. Building KNN graph (k=15, dims=10)... KNN graph built for 50 cells with 501 edges. Cluster sizes: Cluster 1 => 17 cells Cluster 2 => 17 cells Cluster 3 => 16 cells Connectivity matrix: 3×3 Matrix{Float64}: 0.0 1.0 0.867 1.0 0.0 0.892 0.867 0.892 0.0 Test Summary: | Pass Error Total Time SiCell.jl Comprehensive Suite | 28 1 29 4m38.6s Types & Validation | 5 5 11.8s Preprocessing (QC -> Norm -> PCA) | 4 1 5 38.4s Clustering & Graph Algorithms | 6 6 1m16.6s Batch Integration | 3 3 20.0s Trajectory (Diffusion & Pseudotime) | 2 2 13.1s Differential Expression | 1 1 18.8s Annotation | 5 5 1m05.5s Plotting Functions | 2 2 34.3s RNG of the outermost testset: Xoshiro(0xa379de7eeeb2a4e8, 0x953dccb6b532b3af, 0xf597b8ff8cfd652a, 0xccd7337c571680d1, 0xc90c4a0730db3f7e) ERROR: LoadError: Some tests did not pass: 28 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SiCell/aF8cA/test/runtests.jl:56 Testing failed after 330.43s ERROR: LoadError: Package SiCell errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1392.76s: package tests unexpectedly errored