Package evaluation to test SDeMo on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-28T01:15:47.734 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.45s ################################################################################ # Installation # Installing SDeMo... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.2+0 Installed CommonSolve ───────────────── v0.2.14 Installed MultivariateStats ─────────── v0.10.5 Installed FillArrays ────────────────── v1.17.0 Installed GLM ───────────────────────── v1.9.5 Installed DataStructures ────────────── v0.19.6 Installed CompositionsBase ──────────── v0.1.2 Installed MacroTools ────────────────── v0.5.16 Installed Adapt ─────────────────────── v4.7.0 Installed StatsModels ───────────────── v0.7.10 Installed HypergeometricFunctions ───── v0.3.30 Installed StatsBase ─────────────────── v0.34.13 Installed ConstructionBase ──────────── v1.6.0 Installed OccurrencesInterface ──────── v1.2.2 Installed DelimitedFiles ────────────── v1.9.1 Installed InlineStrings ─────────────── v1.4.5 Installed Maxnet ────────────────────── v0.1.6 Installed ShiftedArrays ─────────────── v2.0.0 Installed AliasTables ───────────────── v1.1.3 Installed OrderedCollections ────────── v2.0.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed Statistics ────────────────── v1.11.1 Installed DataAPI ───────────────────── v1.16.0 Installed StatsAPI ──────────────────── v1.8.0 Installed InvertedIndices ───────────── v1.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed PrecompileTools ───────────── v1.3.4 Installed SentinelArrays ────────────── v1.4.10 Installed StructUtils ───────────────── v2.8.5 Installed StaticArrays ──────────────── v1.9.19 Installed OffsetArrays ──────────────── v1.17.0 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed StringManipulation ────────── v0.5.0 Installed QuadGK ────────────────────── v2.11.3 Installed ChainRulesCore ────────────── v1.26.1 Installed Ratios ────────────────────── v0.4.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed LogExpFunctions ───────────── v1.0.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed glmnet_jll ────────────────── v2.0.13+0 Installed Requires ──────────────────── v1.3.1 Installed Interpolations ────────────── v0.16.3 Installed Roots ─────────────────────── v3.0.7 Installed JSON ──────────────────────── v1.7.1 Installed Gamma ─────────────────────── v1.2.0 Installed Parsers ───────────────────── v2.8.7 Installed PrettyTables ──────────────── v3.4.8 Installed Distributions ─────────────── v0.25.131 Installed StatsFuns ─────────────────── v2.2.1 Installed Tables ────────────────────── v1.14.0 Installed Rmath ─────────────────────── v0.9.0 Installed Arpack_jll ────────────────── v3.5.2+0 Installed SpecialFunctions ──────────── v2.9.0 Installed PtrArrays ─────────────────── v1.4.0 Installed Arpack ────────────────────── v0.5.4 Installed WoodburyMatrices ──────────── v1.1.0 Installed GLMNet ────────────────────── v0.7.4 Installed DataFrames ────────────────── v1.8.2 Installed InverseFunctions ──────────── v0.1.17 Installed TestItems ─────────────────── v1.1.0 Installed Reexport ──────────────────── v1.2.2 Installed SortingAlgorithms ─────────── v1.2.3 Installed LaTeXStrings ──────────────── v1.4.1 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.8.0 Installed PDMats ────────────────────── v0.11.41 Installed ScientificTypesBase ───────── v3.1.0 Installed TableTraits ───────────────── v1.0.1 Installed Crayons ───────────────────── v4.2.0 Installed CategoricalArrays ─────────── v1.1.1 Installed Preferences ───────────────── v1.5.2 Installed Accessors ─────────────────── v0.1.45 Installed SDeMo ─────────────────────── v1.10.0 Installed StatisticalTraits ─────────── v3.5.0 Installed MLJModelInterface ─────────── v1.12.1 Installed DocStringExtensions ───────── v0.9.5 Installing 4 artifacts Installed artifact Rmath 111.3 KiB Installed artifact Arpack 110.5 KiB Installed artifact OpenSpecFun 105.4 KiB Installed artifact glmnet 131.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [3e5feb82] + SDeMo v1.10.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [13072b0f] + AxisAlgorithms v1.1.0 [324d7699] + CategoricalArrays v1.1.1 [d360d2e6] + ChainRulesCore v1.26.1 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.17.0 [38e38edf] + GLM v1.9.5 [8d5ece8b] + GLMNet v0.7.4 [a0844989] + Gamma v1.2.0 [34004b35] + HypergeometricFunctions v0.3.30 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.7.1 [b964fa9f] + LaTeXStrings v1.4.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 [81f79f80] + Maxnet v0.1.6 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.5 [ee6415c8] + OccurrencesInterface v1.2.2 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 ⌅ [69de0a69] + Parsers v2.8.7 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [3e5feb82] + SDeMo v1.10.0 [30f210dd] + ScientificTypesBase v3.1.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.5.0 [ec057cc2] + StructUtils v2.8.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [1c621080] + TestItems v1.1.0 [efce3f68] + WoodburyMatrices v1.1.0 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 ⌅ [78c6b45d] + glmnet_jll v2.0.13+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.5 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.4 s ✓ MacroTools 1.4 s ✓ InlineStrings 0.5 s ✓ Reexport 1.0 s ✓ MappedArrays 0.6 s ✓ TensorCore 0.9 s ✓ ConstructionBase 2.0 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.8 s ✓ Format 0.8 s ✓ Observables 0.8 s ✓ RoundingEmulator 0.6 s ✓ PolygonOps 0.9 s ✓ IterTools 1.2 s ✓ IntervalSets 0.7 s ✓ CEnum 0.9 s ✓ Inflate 0.9 s ✓ Contour 0.8 s ✓ TranscodingStreams 0.5 s ✓ LaTeXStrings 0.6 s ✓ TestItems 0.8 s ✓ Statistics 0.6 s ✓ StaticArraysCore 0.7 s ✓ StableRNGs 2.4 s ✓ AdaptivePredicates 0.5 s ✓ PtrArrays 0.6 s ✓ Adapt 0.5 s ✓ DataAPI 0.6 s ✓ InvertedIndices 0.6 s ✓ LazyModules 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.6 s ✓ ShiftedArrays 0.9 s ✓ AbstractTrees 0.8 s ✓ AbstractFFTs 0.5 s ✓ EnumX 2.2 s ✓ FillArrays 0.6 s ✓ IntegerMathUtils 0.8 s ✓ TriplotBase 0.6 s ✓ IndirectArrays 0.5 s ✓ RangeArrays 1.0 s ✓ OrderedCollections 0.9 s ✓ DocStringExtensions 4.7 s ✓ BaseDirs 1.1 s ✓ OffsetArrays 0.6 s ✓ IteratorInterfaceExtensions 2.2 s ✓ Crayons 0.7 s ✓ NaNMath 0.7 s ✓ Requires 2.1 s ✓ ProgressMeter 0.6 s ✓ DelimitedFiles 1.5 s ✓ WoodburyMatrices 1.2 s ✓ Scratch 29.6 s ✓ Unitful 1.8 s ✓ SentinelArrays 1.8 s ✓ StructUtils 2.4 s ✓ PDMats 0.9 s ✓ Compat 1.3 s ✓ Preferences 1.3 s ✓ ScientificTypesBase 3.5 s ✓ UnicodeFun 4.2 s ✓ PkgVersion 2.4 s ✓ SimpleTraits 0.7 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.4 s ✓ IntervalSets → IntervalSetsRandomExt 0.5 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 2.2 s ✓ CodecZstd 21.2 s ✓ TestItemRunner 0.5 s ✓ SignedDistanceFields 1.0 s ✓ Statistics → SparseArraysExt 2.3 s ✓ FixedPointNumbers 0.5 s ✓ IntervalSets → IntervalSetsStatisticsExt 0.6 s ✓ AliasTables 1.0 s ✓ Adapt → AdaptSparseArraysExt 0.6 s ✓ Missings 0.7 s ✓ PooledArrays 0.8 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.5 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.4 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Primes 3.4 s ✓ DataStructures 1.1 s ✓ LogExpFunctions 0.8 s ✓ PaddedViews 0.5 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.8 s ✓ StackViews 0.5 s ✓ TableTraits 0.5 s ✓ Ratios 7.5 s ✓ FileIO 1.4 s ✓ AxisAlgorithms 1.0 s ✓ RelocatableFolders 1.2 s ✓ Unitful → ConstructionBaseUnitfulExt 1.3 s ✓ Unitful → PrintfExt 1.5 s ✓ Unitful → InverseFunctionsUnitfulExt 1.2 s ✓ Unitful → NaNMathExt 0.9 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.4 s ✓ Compat → CompatLinearAlgebraExt 1.2 s ✓ PrecompileTools 1.4 s ✓ JLLWrappers 1.4 s ✓ ComputePipeline 1.0 s ✓ StatisticalTraits 1.7 s ✓ AxisArrays 2.5 s ✓ ColorTypes 3.9 s ✓ Accessors 0.8 s ✓ SortingAlgorithms 1.6 s ✓ QuadGK 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.3 s ✓ Gamma 0.6 s ✓ MosaicViews 1.7 s ✓ Tables 0.6 s ✓ Ratios → RatiosFixedPointNumbersExt 2.2 s ✓ ChainRulesCore 1.6 s ✓ FilePathsBase 3.5 s ✓ CategoricalArrays 5.4 s ✓ StringManipulation 11.6 s ✓ SIMD 1.5 s ✓ CommonSolve 11.6 s ✓ StaticArrays 1.5 s ✓ MuladdMacro 16.9 s ✓ Automa 10.2 s ✓ Parsers 1.7 s ✓ Libffi_jll 1.1 s ✓ EarCut_jll 1.0 s ✓ Bzip2_jll 1.3 s ✓ isoband_jll 1.1 s ✓ OpenBLASConsistentFPCSR_jll 1.4 s ✓ XZ_jll 1.1 s ✓ Rmath_jll 1.1 s ✓ OpenSpecFun_jll 1.0 s ✓ Xorg_xtrans_jll 1.2 s ✓ Opus_jll 1.1 s ✓ glmnet_jll 1.3 s ✓ x265_jll 1.1 s ✓ libpng_jll 1.1 s ✓ CRlibm_jll 1.0 s ✓ Imath_jll 1.1 s ✓ Arpack_jll 1.1 s ✓ Libmount_jll 1.2 s ✓ libfdk_aac_jll 1.1 s ✓ Libuuid_jll 1.2 s ✓ FriBidi_jll 1.2 s ✓ LERC_jll 1.1 s ✓ Xorg_libXau_jll 1.2 s ✓ Ogg_jll 1.2 s ✓ LAME_jll 1.1 s ✓ CoreMath_jll 1.1 s ✓ Graphite2_jll 1.2 s ✓ x264_jll 1.3 s ✓ Xorg_libpciaccess_jll 1.2 s ✓ LLVMOpenMP_jll 1.1 s ✓ Libiconv_jll 1.3 s ✓ libaom_jll 1.2 s ✓ Xorg_libXdmcp_jll 1.2 s ✓ Giflib_jll 1.1 s ✓ Expat_jll 1.1 s ✓ JpegTurbo_jll 3.5 s ✓ MLJModelInterface 1.2 s ✓ ColorTypes → StyledStringsExt 5.8 s ✓ Colors 1.4 s ✓ ColorVectorSpace 1.7 s ✓ Accessors → TestExt 2.3 s ✓ Accessors → IntervalSetsExt 1.5 s ✓ Accessors → LinearAlgebraExt 1.6 s ✓ Accessors → UnitfulExt 4.5 s ✓ StatsBase 1.9 s ✓ HypergeometricFunctions 1.2 s ✓ StructArrays 1.0 s ✓ StructUtils → StructUtilsTablesExt 1.5 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 2.7 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2.8 s ✓ FilePathsBase → FilePathsBaseTestExt 0.9 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.3 s ✓ FilePaths 1.8 s ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 41.2 s ✓ PrettyTables 1.3 s ✓ StaticArrays → StaticArraysStatisticsExt 1.5 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.3 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.1 s ✓ Adapt → AdaptStaticArraysExt 3.7 s ✓ FillArrays → FillArraysStaticArraysExt 1.7 s ✓ Accessors → StaticArraysExt 2.2 s ✓ FFTA 8.8 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 19.1 s ✓ GeometryBasics 1.1 s ✓ FreeType2_jll 0.8 s ✓ Isoband 1.5 s ✓ Rmath 4.9 s ✓ SpecialFunctions 1.1 s ✓ CRlibm 1.3 s ✓ OpenEXR_jll 1.3 s ✓ Arpack 1.1 s ✓ libvorbis_jll 0.9 s ✓ CoreMath 1.4 s ✓ libdrm_jll 1.7 s ✓ Pixman_jll 1.3 s ✓ GettextRuntime_jll 1.2 s ✓ Xorg_libxcb_jll 1.1 s ✓ Libtiff_jll 1.2 s ✓ libsixel_jll 4.3 s ✓ QOI 48.3 s ✓ TiffImages 1.3 s ✓ Animations 1.0 s ✓ Graphics 32.9 s ✓ ImageCore 8.9 s ✓ ColorSchemes 5.1 s ✓ Roots 1.8 s ✓ PDMats → StatsBaseExt 3.0 s ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1.7 s ✓ StructArrays → StructArraysSparseArraysExt 0.7 s ✓ StructArrays → StructArraysLinearAlgebraExt 0.6 s ✓ StructArrays → StructArraysAdaptExt 1.5 s ✓ StructArrays → StructArraysStaticArraysExt 1.0 s ✓ Accessors → StructArraysExt 77.4 s ✓ DataFrames 4.6 s ✓ Interpolations 1.6 s ✓ OccurrencesInterface 2.0 s ✓ CategoricalArrays → CategoricalArraysJSONExt 4.4 s ✓ ColorBrewer 2.7 s ✓ GeometryBasics → IntervalSetsExt 2.8 s ✓ Packing 10.1 s ✓ GridLayoutBase 3.6 s ✓ ShaderAbstractions 2.1 s ✓ FreeType 2.0 s ✓ Fontconfig_jll 3.2 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.5 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.0 s ✓ StatsFuns 4.7 s ✓ OpenEXR 4.2 s ✓ IntervalArithmetic 1.2 s ✓ Glib_jll 1.2 s ✓ Xorg_libX11_jll 2.9 s ✓ ImageBase 3.6 s ✓ PNGFiles 9.7 s ✓ Sixel 8.0 s ✓ JpegTurbo 17.1 s ✓ PlotUtils 1.0 s ✓ Roots → RootsChainRulesCoreExt 1.5 s ✓ Roots → RootsUnitfulExt 3.6 s ✓ Interpolations → InterpolationsUnitfulExt 4.8 s ✓ FreeTypeAbstraction 2.8 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 1.0 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 5.4 s ✓ StatsModels 2.0 s ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1.2 s ✓ IntervalArithmetic → IntervalArithmeticIrrationalConstantsExt 1.2 s ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1.0 s ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1.1 s ✓ Xorg_libXfixes_jll 1.5 s ✓ Xorg_libXrender_jll 1.3 s ✓ Xorg_libXext_jll 4.8 s ✓ ImageAxes 23.7 s ✓ MathTeXEngine 10.6 s ✓ Distributions 6.1 s ✓ ExactPredicates 1.4 s ✓ Cairo_jll 1.3 s ✓ libva_jll 1.3 s ✓ Libglvnd_jll 3.8 s ✓ ImageMetadata 6.8 s ✓ GLM 4.6 s ✓ Distributions → DistributionsTestExt 4.1 s ✓ Distributions → DistributionsChainRulesCoreExt 4.4 s ✓ MultivariateStats 12.6 s ✓ GLMNet 9.8 s ✓ DelaunayTriangulation 1.5 s ✓ HarfBuzz_jll 1.2 s ✓ libwebp_jll 7.6 s ✓ Netpbm 4.4 s ✓ KernelDensity 14.0 s ✓ Maxnet 1.1 s ✓ libass_jll 1.2 s ✓ Pango_jll 6.6 s ✓ WebP 15.5 s ✓ SDeMo 1.4 s ✓ FFMPEG_jll 2.2 s ✓ Cairo 4.6 s ✓ ImageIO ERROR: LoadError: ArgumentError: precision must be non-negative Stacktrace: [1] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8, trimtrailingzeros::Bool) @ Base.Ryu ryu/Ryu.jl:90 ┌ [2] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8) │ @ Base.Ryu ryu/Ryu.jl:89 [inlined] ╰───── repeated 5 times [7] _format_plain_label(x::Float64, precision::Int64; minus_sign::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:50 [inlined] [8] (::Makie.var"#123#124"{Bool, Int64})(x::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] [9] iterate(::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) @ Base generator.jl:49 [inlined] [10] collect(itr::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) @ Base array.jl:839 [11] format_ticks_plain(xs::Vector{Float64}; minus_sign::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] [12] format_ticks_plain(xs::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:55 [inlined] [13] format_ticks_auto(xs::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:101 [14] get_ticklabels(::Makie.Automatic, values::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:817 [15] get_ticks(ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:594 [16] get_ticks(::Nothing, ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/dim-converts/dim-converts.jl:77 [17] (::Makie.var"#LineAxis##22#LineAxis##23"{Observables.Observable{Any}})(::Tuple{Float32, Tuple{Float32, Float32}, Bool}, ::Nothing, limits::Tuple{Float64, Float64}, ticks::Makie.Automatic, tickformat::Makie.Automatic, scale::Function) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:444 ┌ [18] (::Observables.MapCallback)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 ├ [19] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] ├ [20] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 ╰───── repeated 2 times [24] (::Observables.SetindexCallback)(x::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:148 [25] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [26] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [27] (::Observables.MapCallback)(value::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 [28] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [29] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [30] adjustlimits!(la::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:971 [31] (::Makie.var"#1918#1919"{Makie.Axis})(pxa::GeometryBasics.HyperRectangle{2, Int64}, lims::GeometryBasics.HyperRectangle{2, Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:570 [32] (::Observables.OnAny)(value::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420 [33] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [34] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [35] reset_limits!(ax::Makie.Axis; xauto::Bool, yauto::Bool, zauto::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:715 [36] reset_limits!(ax::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:632 [inlined] [37] tightlimits!(la::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/helpers.jl:104 [38] plot!(ax::Makie.Axis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:580 [39] plot!(fa::Makie.FigureAxis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:569 [40] _create_plot(F::Function, attributes::Dict{Symbol, Any}, args::Matrix{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:460 [41] heatmap(args::Matrix{Float64}; kw::@Kwargs{colormap::Tuple{Symbol, Float64}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/recipes.jl:546 [inlined] [42] top-level scope @ ~/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:5 [43] macro expansion @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:6 [inlined] [44] include(mapexpr::Function, mod::Module, _path::RelocatableFolders.Path) @ Base Base.jl:335 [45] top-level scope @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:23 [46] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [47] macro expansion @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:29 [inlined] [48] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [49] top-level scope @ ~/.julia/packages/Makie/XzVRj/src/Makie.jl:459 [50] include(mod::Module, _path::String) @ Base Base.jl:334 [51] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:25 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/precompiles.jl:22 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/Makie.jl:1 in expression starting at stdin:5 ✗ Makie ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2661 [inlined] [3] top-level scope @ ~/.julia/packages/OccurrencesInterface/t5A9u/ext/MakieExtension.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/OccurrencesInterface/t5A9u/ext/MakieExtension.jl:1 in expression starting at stdin:5 ✗ OccurrencesInterface → MakieExtension ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2661 [inlined] [3] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/ext/MakieSDMExtension.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/ext/MakieSDMExtension.jl:1 in expression starting at stdin:5 ✗ SDeMo → MakieSDMExtension ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2661 [inlined] [3] top-level scope @ ~/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:1 in expression starting at stdin:5 ✗ CairoMakie 281 dependencies successfully precompiled in 1113 seconds. 41 already precompiled. 4 dependencies had output during precompilation: ┌ CairoMakie │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2661 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:1 │ in expression starting at stdin:5 └ ┌ OccurrencesInterface → MakieExtension │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2661 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/OccurrencesInterface/t5A9u/ext/MakieExtension.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/OccurrencesInterface/t5A9u/ext/MakieExtension.jl:1 │ in expression starting at stdin:5 └ ┌ SDeMo → MakieSDMExtension │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2661 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/SDeMo/VmeEM/ext/MakieSDMExtension.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/ext/MakieSDMExtension.jl:1 │ in expression starting at stdin:5 └ ┌ Makie │ ERROR: LoadError: ArgumentError: precision must be non-negative │ Stacktrace: │ [1] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8, trimtrailingzeros::Bool) │ @ Base.Ryu ryu/Ryu.jl:90 │ ┌ [2] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8) │ │ @ Base.Ryu ryu/Ryu.jl:89 [inlined] │ ╰───── repeated 5 times │ [7] _format_plain_label(x::Float64, precision::Int64; minus_sign::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:50 [inlined] │ [8] (::Makie.var"#123#124"{Bool, Int64})(x::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] │ [9] iterate(::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) │ @ Base generator.jl:49 [inlined] │ [10] collect(itr::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) │ @ Base array.jl:839 │ [11] format_ticks_plain(xs::Vector{Float64}; minus_sign::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] │ [12] format_ticks_plain(xs::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:55 [inlined] │ [13] format_ticks_auto(xs::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:101 │ [14] get_ticklabels(::Makie.Automatic, values::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:817 │ [15] get_ticks(ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:594 │ [16] get_ticks(::Nothing, ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/dim-converts/dim-converts.jl:77 │ [17] (::Makie.var"#LineAxis##22#LineAxis##23"{Observables.Observable{Any}})(::Tuple{Float32, Tuple{Float32, Float32}, Bool}, ::Nothing, limits::Tuple{Float64, Float64}, ticks::Makie.Automatic, tickformat::Makie.Automatic, scale::Function) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:444 │ ┌ [18] (::Observables.MapCallback)(value::Any) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 │ ├ [19] notify(observable::Observables.Observable) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ ├ [20] setindex!(observable::Observables.Observable, val::Any) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ ╰───── repeated 2 times │ [24] (::Observables.SetindexCallback)(x::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:148 │ [25] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [26] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [27] (::Observables.MapCallback)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 │ [28] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [29] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [30] adjustlimits!(la::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:971 │ [31] (::Makie.var"#1918#1919"{Makie.Axis})(pxa::GeometryBasics.HyperRectangle{2, Int64}, lims::GeometryBasics.HyperRectangle{2, Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:570 │ [32] (::Observables.OnAny)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420 │ [33] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [34] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [35] reset_limits!(ax::Makie.Axis; xauto::Bool, yauto::Bool, zauto::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:715 │ [36] reset_limits!(ax::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:632 [inlined] │ [37] tightlimits!(la::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/helpers.jl:104 │ [38] plot!(ax::Makie.Axis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:580 │ [39] plot!(fa::Makie.FigureAxis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:569 │ [40] _create_plot(F::Function, attributes::Dict{Symbol, Any}, args::Matrix{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:460 │ [41] heatmap(args::Matrix{Float64}; kw::@Kwargs{colormap::Tuple{Symbol, Float64}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/recipes.jl:546 [inlined] │ [42] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:5 │ [43] macro expansion │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:6 [inlined] │ [44] include(mapexpr::Function, mod::Module, _path::RelocatableFolders.Path) │ @ Base Base.jl:335 │ [45] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:23 │ [46] macro expansion │ @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] │ [47] macro expansion │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:29 [inlined] │ [48] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [49] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/src/Makie.jl:459 │ [50] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [51] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:25 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/precompiles.jl:22 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/Makie.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 4 packages failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_FE0nze" (ProcessExited(1)). OccurrencesInterface → MakieExtension Failed to precompile MakieExtension [a7c53cee-eaee-5241-90a8-c97fdd5e1abd] to "/home/pkgeval/.julia/compiled/v1.14/MakieExtension/jl_tFEx2V" (ProcessExited(1)). SDeMo → MakieSDMExtension Failed to precompile MakieSDMExtension [2bb1e333-7e9a-5521-9854-0940455f6ddf] to "/home/pkgeval/.julia/compiled/v1.14/MakieSDMExtension/jl_Z9AUEp" (ProcessExited(1)). Makie Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.14/Makie/jl_mtMNPF" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1110.7s ################################################################################ # Testing # Testing SDeMo Status `/tmp/jl_lDidOZ/Project.toml` [13f3f980] CairoMakie v0.15.13 [3e5feb82] SDeMo v1.10.0 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.3.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_lDidOZ/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [7d9fca2a] Arpack v0.5.4 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.4.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.13 [324d7699] CategoricalArrays v1.1.1 [d360d2e6] ChainRulesCore v1.26.1 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.8 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [b7a15901] CoreMath v0.1.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [429591f6] ExactPredicates v2.2.9 [b86e33f2] FFTA v0.3.1 [5789e2e9] FileIO v1.20.0 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [38e38edf] GLM v1.9.5 [8d5ece8b] GLMNet v0.7.4 [a0844989] Gamma v1.2.0 [5c1252a2] GeometryBasics v0.5.11 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [34004b35] HypergeometricFunctions v0.3.30 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.4 [a98d9a8b] Interpolations v0.16.3 [d1acc4aa] IntervalArithmetic v1.0.11 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.7.1 [b835a17e] JpegTurbo v0.1.6 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Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... We can do Platt calibration (all values): Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:55 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:57 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:57 We can do Isotonic calibration (some values, keywords): Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:64 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:66 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:66 We can do Isotonic calibration (bootstrapped values, keywords): Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:73 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:75 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:75 We can do Platt calibration (bootstrapped values): Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:82 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:84 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/calibration.jl:84 We can do Isotonic calibration: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/isotonic.jl:98 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/isotonic.jl:100 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/isotonic.jl:100 We can do a calibration curve: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/reliability.jl:50 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/calibration/reliability.jl:52 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/calibration/reliability.jl:52 We can train a decison tree: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:288 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:291 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:291 We can train a decison tree and make a prediction with it: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:298 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:301 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/decisiontree.jl:301 We can run a Logistic model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:240 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:247 [13] eval(m::Module, e::Any) @ Core boot.jl:618 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [15] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [16] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [17] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [18] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [19] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [20] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [21] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [22] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [23] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [25] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:247 We can run a verbose Logistic model with no training data: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:251 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:257 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/classifiers/logistic.jl:257 We can do LOO validation: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:40 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Int64}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Int64}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:43 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Int64}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [13] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Int64}, 1, Vector{Tuple{Vector{Int64}, Int64}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:43 We can do holdout validation: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:109 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:112 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [13] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:112 We can do montecarlo validation: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:131 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:134 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [13] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:134 We can do kfold validation: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:166 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:169 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [13] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:169 We can cross-validate an SDM: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:335 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:338 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:338 We can cross-validate a model without specifying folds: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:346 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:349 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:349 We can cross-validate an ensemble model using the consensus keyword: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:356 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [inlined] [11] train!(ensemble::SDeMo.Bagging; kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:37 [12] train!(ensemble::SDeMo.Bagging) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:361 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] (::SDeMo.var"#73#74"{UnitRange{Int64}, SDeMo.Bagging, Dict{Symbol, Union{}}})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:33 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:361 We can construct null CM from an SDM: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/null.jl:82 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/null.jl:84 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/crossvalidation/null.jl:84 We can get partial responses for a model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:87 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:89 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:89 We can get inflated partial responses for a model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:95 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:97 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/deprecated/partialresponse.jl:97 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 ┌ Warning: stepwisevif! will be deprecated - use variables! with VarianceInflationFactor instead └ @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/deprecated/vif.jl:24 We can setup an ensemble where one model is a bagged one: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/ensembles/ensemble.jl:51 Got exception outside of a @test LoadError: TaskFailedException nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] macro expansion @ ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:85 [inlined] [14] (::SDeMo.var"#81#82"{@Kwargs{}, SDeMo.Ensemble, Base.OneTo{Int64}})(tid::Int64) @ SDeMo threadingconstructs.jl:555 [15] (::Base.Threads.var"#threading_run##2#threading_run##3"{Int64, SDeMo.var"#81#82"{@Kwargs{}, SDeMo.Ensemble, Base.OneTo{Int64}}})() @ Base.Threads threadingconstructs.jl:185 Stacktrace: [1] threading_run(fun::SDeMo.var"#81#82"{@Kwargs{}, SDeMo.Ensemble, Base.OneTo{Int64}}, static::Bool) @ Base.Threads threadingconstructs.jl:228 [2] macro expansion @ threadingconstructs.jl:240 [inlined] [3] train!(ensemble::SDeMo.Ensemble; kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:84 [inlined] [4] train!(ensemble::SDeMo.Ensemble) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:83 [5] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/ensembles/ensemble.jl:57 [6] eval(m::Module, e::Any) @ Core boot.jl:618 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [8] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [9] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [10] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [11] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [12] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [13] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [14] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [15] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [16] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [18] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/ensembles/ensemble.jl:57 We can generate a counterfactual: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:136 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:138 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:138 We can generate a counterfactual from a bagged model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:150 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [inlined] [11] train!(ensemble::SDeMo.Bagging; kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:37 [12] train!(ensemble::SDeMo.Bagging) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:153 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] (::SDeMo.var"#73#74"{UnitRange{Int64}, SDeMo.Bagging, Dict{Symbol, Union{}}})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/ensembles/pipeline.jl:33 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/explanations/counterfactual.jl:153 We can train a chained transform: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:38 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:44 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:44 We can train a Logistic after a PCA using a chained transform: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:53 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [inlined] [11] train!(chain::SDeMo.ChainedTransform{SDeMo.PCATransform, SDeMo.ZScore}, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:25 [12] train!(chain::SDeMo.ChainedTransform{SDeMo.PCATransform, SDeMo.ZScore}, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:24 [13] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [14] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [15] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:58 [16] eval(m::Module, e::Any) @ Core boot.jl:618 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [18] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [19] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [20] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [21] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [22] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [23] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [24] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [25] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [26] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [28] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:58 [ Info: Baseline mcc: 0.0 [ Info: Optimal 1 variables model - mcc ≈ 0.8115 Variable selection works on a chained transformation: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:63 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [inlined] [13] variables!(model::SDeMo.SDM{Float64, Bool}, ::Core.TypeEgal{SDeMo.ForwardSelection}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; included::Vector{Int64}, optimality::typeof(SDeMo.mcc), verbose::Bool, bagfeatures::Bool, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/variables/selection.jl:223 [14] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:66 [15] eval(m::Module, e::Any) @ Core boot.jl:618 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [17] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [18] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [19] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [20] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [21] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [22] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [23] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [24] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [25] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [27] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [inlined] [11] train!(chain::SDeMo.ChainedTransform{SDeMo.PCATransform, SDeMo.ZScore}, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:25 [12] train!(chain::SDeMo.ChainedTransform{SDeMo.PCATransform, SDeMo.ZScore}, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:24 [13] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [14] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [15] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/chainedtransform.jl:66 We can train a z-score transformer: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:49 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:52 [12] eval(m::Module, e::Any) @ Core boot.jl:618 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [14] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [15] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [16] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [17] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [18] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [19] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [20] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [21] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [22] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [24] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:52 We can write a model and load it back: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:121 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:124 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:124 We can write a Logistic model and load it back: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:135 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:138 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:138 We can preserve the hyper-parameters when loading a model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:149 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:156 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/utilities/io.jl:156 We can train a Mondrian conformal predictor: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:214 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:216 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:216 We can train a conformal predictor: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:224 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:226 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:226 We can predict with a trained conformal predictor: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:234 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:236 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:236 We cannot predict with an untrained conformal predictor: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:243 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:245 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:245 We can train a model using folds: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:250 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:252 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:252 We can train a model using folds with a keyword argument: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:259 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:261 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:261 We can train a model using folds without specifying them: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:268 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:270 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:270 We can train a model using folds without specifying them but with a keyword argument: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:277 Got exception outside of a @test LoadError: TaskFailedException Stacktrace: [1] wait(t::Task, tok::Base.CancellationToken; throw::Bool) @ Base task.jl:500 [2] wait(t::Task; throw::Bool, cancel::Base.UseDefaultToken) @ Base task.jl:494 [3] fetch(t::Task; cancel::Base.UseDefaultToken) @ Base task.jl:730 [inlined] [4] fetch(t::Task) @ Base task.jl:727 [inlined] [5] _broadcast_getindex_evalf(f::typeof(fetch), args::Task) @ Base.Broadcast broadcast.jl:703 [inlined] [6] _broadcast_getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:676 [inlined] [7] _getindex(::IndexLinear, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, I::Int64) @ Base.Broadcast broadcast.jl:620 [inlined] [8] getindex(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Base.Broadcast.Extruded{Vector{Task}, Tuple{Bool}, Tuple{Int64}}}}, Is::Int64) @ Base.Broadcast broadcast.jl:616 [inlined] [9] copy(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Tuple{Base.OneTo{Int64}}, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:965 [inlined] [10] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(fetch), Tuple{Vector{Task}}}) @ Base.Broadcast broadcast.jl:920 [11] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; thr::Nothing, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:232 [12] crossvalidate(sdm::SDeMo.SDM{Float64, Bool}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:212 [inlined] [13] variables!(model::SDeMo.SDM{Float64, Bool}, ::Core.TypeEgal{SDeMo.ForwardSelection}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}; included::Vector{Int64}, optimality::typeof(SDeMo.mcc), verbose::Bool, bagfeatures::Bool, kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/variables/selection.jl:223 [14] variables!(model::SDeMo.SDM{Float64, Bool}, ::Core.TypeEgal{SDeMo.ForwardSelection}, folds::Vector{Tuple{Vector{Int64}, Vector{Int64}}}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/variables/selection.jl:122 [inlined] [15] variables!(model::SDeMo.SDM{Float64, Bool}, ::Core.TypeEgal{SDeMo.ForwardSelection}; kwargs::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/variables/selection.jl:299 [inlined] [16] variables!(model::SDeMo.SDM{Float64, Bool}, ::Core.TypeEgal{SDeMo.ForwardSelection}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/variables/selection.jl:294 [17] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/conformal.jl:278 [18] eval(m::Module, e::Any) @ Core boot.jl:618 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [20] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [21] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [22] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [23] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [24] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [25] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [26] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [27] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [28] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [30] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 nested task error: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:26 [10] train!(trf::SDeMo.PCATransform, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/multivariate.jl:24 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Vector{Int64}, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] _validate_one_model!(::SDeMo.SDM{Float64, Bool}, ::Tuple{Vector{Int64}, Vector{Int64}}, ::Float64) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:326 [13] (::SDeMo.var"#153#154"{SubArray{Tuple{Vector{Int64}, Vector{Int64}}, 1, Vector{Tuple{Vector{Int64}, Vector{Int64}}}, Tuple{UnitRange{Int64}}, true}, @Kwargs{}, SDeMo.SDM{Float64, Bool}, Float64})() @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/crossvalidation/crossvalidation.jl:226 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/conformal.jl:278 We can train a model without the absences: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:158 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:161 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:161 We can train a model with the absences: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:171 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:174 [13] eval(m::Module, e::Any) @ Core boot.jl:618 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [15] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [16] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [17] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [18] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [19] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [20] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [21] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [22] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [23] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [25] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:174 We can set hyper-parameters for a full model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/test/runtests.jl:6 Got exception outside of a @test LoadError: MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] train!(zs::SDeMo.ZScore, X::Matrix{Float64}; kwdef::@Kwargs{}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:41 [inlined] [10] train!(zs::SDeMo.ZScore, X::Matrix{Float64}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/transformers/univariate.jl:39 [11] train!(sdm::SDeMo.SDM{Float64, Bool}; threshold::Bool, training::Function, optimality::typeof(SDeMo.mcc), absences::Bool) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:36 [12] train!(sdm::SDeMo.SDM{Float64, Bool}) @ SDeMo ~/.julia/packages/SDeMo/VmeEM/src/pipeline.jl:21 [13] top-level scope @ ~/.julia/packages/SDeMo/VmeEM/test/runtests.jl:11 [14] eval(m::Module, e::Any) @ Core boot.jl:618 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base loading.jl:3258 [16] include_string(m::Module, txt::String, fname::String) @ Base loading.jl:3268 [17] (::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:219 [inlined] [18] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{Module, String, String}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/vendored_code.jl:7 [19] (::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:218 [inlined] [20] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{Module, String, String}, dir::String) @ Base.Filesystem file.jl:113 [21] run_testitem(mod::Module, filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:217 [22] run_testitem_in_testset(ts::Test.DefaultTestSet, testitem::@NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, package_name::String, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any}) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:259 [23] (::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet})() @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:698 [inlined] [24] macro expansion @ ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:664 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2416 [inlined] [26] with_testset(f::TestItemRunner.var"#run_node!##0#run_node!##1"{String, TestItemRunner.TestSetupModuleSet, Dict{Symbol, Any}, @NamedTuple{filename::String, code::String, name::String, option_tags::Vector{Symbol}, option_default_imports::Bool, option_setup::Vector{Symbol}, skip::Bool, line::Int64, column::Int64}, Test.DefaultTestSet}, ts::Test.DefaultTestSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/mJ57a/src/TestItemRunner.jl:663 in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/test/runtests.jl:11 ERROR: LoadError: ArgumentError: precision must be non-negative Stacktrace: [1] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8, trimtrailingzeros::Bool) @ Base.Ryu ryu/Ryu.jl:90 ┌ [2] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8) │ @ Base.Ryu ryu/Ryu.jl:89 [inlined] ╰───── repeated 5 times [7] _format_plain_label(x::Float64, precision::Int64; minus_sign::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:50 [inlined] [8] (::Makie.var"#123#124"{Bool, Int64})(x::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] [9] iterate(::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) @ Base generator.jl:49 [inlined] [10] collect(itr::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) @ Base array.jl:839 [11] format_ticks_plain(xs::Vector{Float64}; minus_sign::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] [12] format_ticks_plain(xs::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:55 [inlined] [13] format_ticks_auto(xs::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:101 [14] get_ticklabels(::Makie.Automatic, values::Vector{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:817 [15] get_ticks(ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:594 [16] get_ticks(::Nothing, ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) @ Makie ~/.julia/packages/Makie/XzVRj/src/dim-converts/dim-converts.jl:77 [17] (::Makie.var"#LineAxis##22#LineAxis##23"{Observables.Observable{Any}})(::Tuple{Float32, Tuple{Float32, Float32}, Bool}, ::Nothing, limits::Tuple{Float64, Float64}, ticks::Makie.Automatic, tickformat::Makie.Automatic, scale::Function) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:444 ┌ [18] (::Observables.MapCallback)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 ├ [19] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] ├ [20] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 ╰───── repeated 2 times [24] (::Observables.SetindexCallback)(x::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:148 [25] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [26] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [27] (::Observables.MapCallback)(value::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 [28] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [29] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [30] adjustlimits!(la::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:971 [31] (::Makie.var"#1918#1919"{Makie.Axis})(pxa::GeometryBasics.HyperRectangle{2, Int64}, lims::GeometryBasics.HyperRectangle{2, Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:570 [32] (::Observables.OnAny)(value::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420 [33] notify(observable::Observables.Observable) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] [34] setindex!(observable::Observables.Observable, val::Any) @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 [35] reset_limits!(ax::Makie.Axis; xauto::Bool, yauto::Bool, zauto::Bool) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:715 [36] reset_limits!(ax::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:632 [inlined] [37] tightlimits!(la::Makie.Axis) @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/helpers.jl:104 [38] plot!(ax::Makie.Axis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:580 [39] plot!(fa::Makie.FigureAxis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:569 [40] _create_plot(F::Function, attributes::Dict{Symbol, Any}, args::Matrix{Float64}) @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:460 [41] heatmap(args::Matrix{Float64}; kw::@Kwargs{colormap::Tuple{Symbol, Float64}}) @ Makie ~/.julia/packages/Makie/XzVRj/src/recipes.jl:546 [inlined] [42] top-level scope @ ~/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:5 [43] macro expansion @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:6 [inlined] [44] include(mapexpr::Function, mod::Module, _path::RelocatableFolders.Path) @ Base Base.jl:335 [45] top-level scope @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:23 [46] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [47] macro expansion @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:29 [inlined] [48] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [49] top-level scope @ ~/.julia/packages/Makie/XzVRj/src/Makie.jl:459 [50] include(mod::Module, _path::String) @ Base Base.jl:334 [51] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:25 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/precompiles.jl:22 in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/Makie.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"), "Makie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2661 [inlined] [3] top-level scope @ ~/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/sIxUP/src/CairoMakie.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ CairoMakie │ [Output was shown above] └ ┌ Makie │ ERROR: LoadError: ArgumentError: precision must be non-negative │ Stacktrace: │ [1] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8, trimtrailingzeros::Bool) │ @ Base.Ryu ryu/Ryu.jl:90 │ ┌ [2] writefixed(x::Float64, precision::Int64, plus::Bool, space::Bool, hash::Bool, decchar::UInt8) │ │ @ Base.Ryu ryu/Ryu.jl:89 [inlined] │ ╰───── repeated 5 times │ [7] _format_plain_label(x::Float64, precision::Int64; minus_sign::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:50 [inlined] │ [8] (::Makie.var"#123#124"{Bool, Int64})(x::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] │ [9] iterate(::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) │ @ Base generator.jl:49 [inlined] │ [10] collect(itr::Base.Generator{Vector{Float64}, Makie.var"#123#124"{Bool, Int64}}) │ @ Base array.jl:839 │ [11] format_ticks_plain(xs::Vector{Float64}; minus_sign::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:57 [inlined] │ [12] format_ticks_plain(xs::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:55 [inlined] │ [13] format_ticks_auto(xs::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/tick_format.jl:101 │ [14] get_ticklabels(::Makie.Automatic, values::Vector{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:817 │ [15] get_ticks(ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:594 │ [16] get_ticks(::Nothing, ticks::Makie.Automatic, scale::Function, formatter::Makie.Automatic, vmin::Float64, vmax::Float64) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/dim-converts/dim-converts.jl:77 │ [17] (::Makie.var"#LineAxis##22#LineAxis##23"{Observables.Observable{Any}})(::Tuple{Float32, Tuple{Float32, Float32}, Bool}, ::Nothing, limits::Tuple{Float64, Float64}, ticks::Makie.Automatic, tickformat::Makie.Automatic, scale::Function) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/lineaxis.jl:444 │ ┌ [18] (::Observables.MapCallback)(value::Any) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 │ ├ [19] notify(observable::Observables.Observable) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ ├ [20] setindex!(observable::Observables.Observable, val::Any) │ │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ ╰───── repeated 2 times │ [24] (::Observables.SetindexCallback)(x::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:148 │ [25] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [26] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [27] (::Observables.MapCallback)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:436 │ [28] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [29] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [30] adjustlimits!(la::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:971 │ [31] (::Makie.var"#1918#1919"{Makie.Axis})(pxa::GeometryBasics.HyperRectangle{2, Int64}, lims::GeometryBasics.HyperRectangle{2, Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:570 │ [32] (::Observables.OnAny)(value::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:420 │ [33] notify(observable::Observables.Observable) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:206 [inlined] │ [34] setindex!(observable::Observables.Observable, val::Any) │ @ Observables ~/.julia/packages/Observables/YdEbO/src/Observables.jl:123 │ [35] reset_limits!(ax::Makie.Axis; xauto::Bool, yauto::Bool, zauto::Bool) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:715 │ [36] reset_limits!(ax::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/blocks/axis.jl:632 [inlined] │ [37] tightlimits!(la::Makie.Axis) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/makielayout/helpers.jl:104 │ [38] plot!(ax::Makie.Axis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:580 │ [39] plot!(fa::Makie.FigureAxis, plot::Makie.Heatmap{Tuple{Makie.EndPoints{Float32}, Makie.EndPoints{Float32}, Matrix{Float32}}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:569 │ [40] _create_plot(F::Function, attributes::Dict{Symbol, Any}, args::Matrix{Float64}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/figureplotting.jl:460 │ [41] heatmap(args::Matrix{Float64}; kw::@Kwargs{colormap::Tuple{Symbol, Float64}}) │ @ Makie ~/.julia/packages/Makie/XzVRj/src/recipes.jl:546 [inlined] │ [42] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:5 │ [43] macro expansion │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:6 [inlined] │ [44] include(mapexpr::Function, mod::Module, _path::RelocatableFolders.Path) │ @ Base Base.jl:335 │ [45] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:23 │ [46] macro expansion │ @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] │ [47] macro expansion │ @ ~/.julia/packages/Makie/XzVRj/src/precompiles.jl:29 [inlined] │ [48] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [49] top-level scope │ @ ~/.julia/packages/Makie/XzVRj/src/Makie.jl:459 │ [50] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [51] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/precompile/shared-precompile.jl:25 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/precompiles.jl:22 │ in expression starting at /home/pkgeval/.julia/packages/Makie/XzVRj/src/Makie.jl:1 │ in expression starting at stdin:5 └ We can plot the occurrences of a georeferenced model: Error During Test at /home/pkgeval/.julia/packages/SDeMo/VmeEM/test/runtests.jl:25 Got exception outside of a @test LoadError: The following 2 packages failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_dYhD0b" (ProcessExited(1)). Makie Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.14/Makie/jl_tv52Zx" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/test/runtests.jl:25 Test Summary: | Pass Error Total Time SDeMo | 3368 42 3410 7m42.1s src | 3367 40 3407 4m45.5s boosting/adaboost.jl | 56 56 38.8s calibration | 6 6 17.9s calibration.jl | 4 4 17.8s We can do Platt calibration (all values) | 1 1 17.5s We can do Isotonic calibration (some values, keywords) | 1 1 0.1s We can do Isotonic calibration (bootstrapped values, keywords) | 1 1 0.1s We can do Platt calibration (bootstrapped values) | 1 1 0.1s isotonic.jl | 1 1 0.0s We can do Isotonic calibration | 1 1 0.0s reliability.jl | 1 1 0.1s We can do a calibration curve | 1 1 0.1s classifiers | 26 4 30 33.2s decisiontree.jl | 5 2 7 0.7s We can train a decision stump | 2 2 0.5s A DecisionTree has hyper-parameters | 2 2 0.0s We can operate on the hyper-parameters of a DecisionTree | 1 1 0.0s We can train a decison tree | 1 1 0.1s We can train a decison tree and make a prediction with it | 1 1 0.1s logistic.jl | 6 2 8 1.3s We get the correct response for a sigmoid | 3 3 0.0s A Logistic has hyper-parameters | 3 3 0.1s We can run a Logistic model | 1 1 1.0s We can run a verbose Logistic model with no training data | 1 1 0.1s maxent.jl | 3 3 24.5s naivebayes.jl | 12 12 6.7s crossvalidation | 14 8 22 10.9s confusionmatrix.jl | 12 12 3.4s crossvalidation.jl | 2 7 9 7.5s We can do LOO validation | 1 1 2.4s We can do LOO validation with re-balancing | 1 1 0.5s We can do holdout validation | 1 1 0.7s We can do montecarlo validation | 1 1 0.3s We can do kfold validation | 1 1 1.5s We can split data in an SDM | 1 1 0.1s We can cross-validate an SDM | 1 1 0.1s We can cross-validate a model without specifying folds | 1 1 0.1s We can cross-validate an ensemble model using the consensus keyword | 1 1 1.7s null.jl | 1 1 0.1s We can construct null CM from an SDM | 1 1 0.1s deprecated | 2 2 4 13.1s partialresponse.jl | 1 2 3 6.9s We can get partial responses for a model | 1 1 0.1s We can get inflated partial responses for a model | 1 1 0.1s We can get inflated partial responses for an ensemble | 1 1 6.7s vif.jl | 1 1 6.2s ensembles | 34 1 35 3.0s bagging.jl | 26 26 1.6s ensemble.jl | 8 1 9 1.4s We can setup an ensemble | 2 2 0.2s We can setup an ensemble the other way | 1 1 0.1s We can add and remove models from an ensemble | 4 4 0.4s We can setup an ensemble where one model is a bagged one | 1 1 2 0.8s explanations | 59 2 61 18.7s counterfactual.jl | 2 2 0.2s We can generate a counterfactual | 1 1 0.1s We can generate a counterfactual from a bagged model | 1 1 0.1s featureimportance.jl | 25 25 12.4s modelexplanations.jl | 23 23 2.8s shapley.jl | 11 11 3.3s interfaces/OccurrencesInterface.jl | 6 6 0.9s transformers | 13 4 17 11.4s chainedtransform.jl | 2 3 5 10.9s We can train a chained transform | 1 1 0.3s We can train a Logistic after a PCA using a chained transform | 1 1 0.3s Variable selection works on a chained transformation | 1 1 10.3s We can access the first and last element of a chained transformation | 2 2 0.0s multivariate.jl | 1 1 0.0s univariate.jl | 10 1 11 0.5s We can train a raw data transformer | 10 10 0.4s We can train a z-score transformer | 1 1 0.1s utilities | 3075 3 3078 40.4s copy.jl | 3070 3070 0.4s demodata.jl | 0 0.0s io.jl | 5 3 8 40.0s We can write a model with no hyper-parameters and load it back | 4 4 37.1s We can write a model and load it back | 1 1 0.1s We can write a Logistic model and load it back | 1 1 0.1s We can preserve the hyper-parameters when loading a model | 1 1 0.1s We can save and load a SDM with geospatial references | 1 1 2.6s variables/selection.jl | 66 66 1m33.9s conformal.jl | 8 8 1.2s We can train a Mondrian conformal predictor | 1 1 0.1s We can train a conformal predictor | 1 1 0.1s We can predict with a trained conformal predictor | 1 1 0.1s We cannot predict with an untrained conformal predictor | 1 1 0.1s We can train a model using folds | 1 1 0.1s We can train a model using folds with a keyword argument | 1 1 0.1s We can train a model using folds without specifying them | 1 1 0.1s We can train a model using folds without specifying them but with a keyword argument | 1 1 0.6s hyperparameters.jl | 4 4 0.1s models.jl | 11 11 1.9s pipeline.jl | 1 2 3 0.2s We get an UntrainedModelError when predicting with an untrained model | 1 1 0.0s We can train a model without the absences | 1 1 0.1s We can train a model with the absences | 1 1 0.1s test/runtests.jl | 1 2 3 2m56.1s We can set hyper-parameters for a full model | 1 1 0.1s We can run a decision stump (it works fr fr) | 1 1 0.1s We can plot the occurrences of a georeferenced model | 1 1 2m55.9s ERROR: LoadError: Some tests did not pass: 3368 passed, 0 failed, 42 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SDeMo/VmeEM/test/runtests.jl:3 Testing failed after 512.1s ERROR: LoadError: Package SDeMo errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1752.21s: package fails to precompile