Package evaluation to test SCTransform on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-27T21:17:47.392 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.27s ################################################################################ # Installation # Installing SCTransform... Resolving package versions... Installed Adapt ─────────────────────── v4.7.0 Installed CommonSolve ───────────────── v0.2.14 Installed FillArrays ────────────────── v1.17.0 Installed DataStructures ────────────── v0.19.6 Installed CompositionsBase ──────────── v0.1.2 Installed StableHashTraits ──────────── v2.0.3 Installed MacroTools ────────────────── v0.5.16 Installed SCTransform ───────────────── v0.4.1 Installed CodecZlib ─────────────────── v0.7.9 Installed OrderedCollections ────────── v2.0.1 Installed ArrayInterface ────────────── v7.30.0 Installed DelimitedFiles ────────────── v1.9.1 Installed ConstructionBase ──────────── v1.6.0 Installed Compat ────────────────────── v4.18.1 Installed TranscodingStreams ────────── v0.11.3 Installed Optim ─────────────────────── v2.2.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataValueInterfaces ───────── v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed PositiveFactorizations ────── v0.2.4 Installed ProgressMeter ─────────────── v1.11.0 Installed StaticArraysCore ──────────── v1.4.4 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.4 Installed NaNMath ───────────────────── v1.1.4 Installed LogExpFunctions ───────────── v1.0.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Tables ────────────────────── v1.14.0 Installed IrrationalConstants ───────── v0.2.6 Installed TupleTools ────────────────── v1.6.0 Installed FiniteDiff ────────────────── v2.33.0 Installed Roots ─────────────────────── v3.0.7 Installed NLSolversBase ─────────────── v8.0.1 Installed SpecialFunctions ──────────── v2.9.0 Installed LineSearches ──────────────── v7.7.1 Installed EnumX ─────────────────────── v1.0.7 Installed Scratch ───────────────────── v1.3.0 Installed JLLWrappers ───────────────── v1.8.0 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed TableTraits ───────────────── v1.0.1 Installed StructTypes ───────────────── v1.11.0 Installed KernelDensitySJ ───────────── v0.2.3 Installed Preferences ───────────────── v1.5.2 Installed ADTypes ───────────────────── v1.24.0 Installed Accessors ─────────────────── v0.1.45 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.21 Installing 1 artifacts Installed artifact OpenSpecFun 105.4 KiB Updating `~/.julia/environments/v1.14/Project.toml` [f56ea72b] + SCTransform v0.4.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [4fba245c] + ArrayInterface v7.30.0 [944b1d66] + CodecZlib v0.7.9 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.21 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.33.0 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [49dc5b4e] + KernelDensitySJ v0.2.3 [d3d80556] + LineSearches v7.7.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [d41bc354] + NLSolversBase v8.0.1 [77ba4419] + NaNMath v1.1.4 [429524aa] + Optim v2.2.2 [bac558e1] + OrderedCollections v2.0.1 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [f2b01f46] + Roots v3.0.7 [f56ea72b] + SCTransform v0.4.1 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.9.0 [c5dd0088] + StableHashTraits v2.0.3 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95972d] + TupleTools v1.6.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [9fa8497b] + Future v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 8.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.7 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.6 s ✓ MacroTools 1.4 s ✓ InlineStrings 0.6 s ✓ Reexport 0.6 s ✓ Adapt 0.8 s ✓ Statistics 0.6 s ✓ DataAPI 0.6 s ✓ PositiveFactorizations 0.7 s ✓ ConstructionBase 2.1 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StaticArraysCore 1.0 s ✓ OrderedCollections 0.6 s ✓ InvertedIndices 0.6 s ✓ StableRNGs 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.8 s ✓ DocStringExtensions 0.5 s ✓ EnumX 2.0 s ✓ FillArrays 0.9 s ✓ TranscodingStreams 0.6 s ✓ TupleTools 0.6 s ✓ IteratorInterfaceExtensions 0.6 s ✓ LaTeXStrings 1.9 s ✓ Crayons 0.8 s ✓ Requires 0.6 s ✓ NaNMath 0.6 s ✓ DelimitedFiles 2.5 s ✓ ProgressMeter 2.0 s ✓ SentinelArrays 1.5 s ✓ Scratch 2.1 s ✓ StructTypes 1.0 s ✓ Compat 1.3 s ✓ Preferences 0.9 s ✓ ArrayInterface 1.6 s ✓ Adapt → AdaptSparseArraysExt 1.5 s ✓ Statistics → SparseArraysExt 0.7 s ✓ Missings 0.8 s ✓ PooledArrays 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3.4 s ✓ DataStructures 1.6 s ✓ InverseFunctions → InverseFunctionsTestExt 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.4 s ✓ LogExpFunctions 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 1.3 s ✓ CodecZlib 0.5 s ✓ TableTraits 0.6 s ✓ Compat → CompatLinearAlgebraExt 1.6 s ✓ JLLWrappers 1.6 s ✓ MPIPreferences 1.1 s ✓ PrecompileTools 0.9 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.5 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1.8 s ✓ Setfield 0.8 s ✓ SortingAlgorithms 3.8 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.7 s ✓ Tables 1.4 s ✓ libaec_jll 1.2 s ✓ aws_c_common_jll 1.1 s ✓ Xorg_libpciaccess_jll 1.1 s ✓ Libiconv_jll 1.1 s ✓ s2n_tls_jll 0.9 s ✓ dlfcn_win32_jll 0.8 s ✓ MicrosoftMPI_jll 1.2 s ✓ OpenSpecFun_jll 4.2 s ✓ MPItrampoline_jll 2.2 s ✓ ADTypes 6.6 s ✓ StringManipulation 1.6 s ✓ CommonSolve 1.0 s ✓ FiniteDiff 2.4 s ✓ Accessors → LinearAlgebraExt 1.9 s ✓ Accessors → TestExt 2.0 s ✓ StableHashTraits 1.1 s ✓ aws_checksums_jll 1.5 s ✓ aws_c_sdkutils_jll 1.3 s ✓ aws_c_cal_jll 1.3 s ✓ aws_c_compression_jll 2.5 s ✓ XML2_jll 5.5 s ✓ SpecialFunctions 2.3 s ✓ DifferentiationInterface 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 42.0 s ✓ PrettyTables 1.7 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 5.4 s ✓ Roots 1.7 s ✓ aws_c_io_jll 1.4 s ✓ Hwloc_jll 2.1 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1.0 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 77.2 s ✓ DataFrames 1.4 s ✓ KernelDensitySJ 1.5 s ✓ aws_c_http_jll 1.3 s ✓ MPICH_jll 4.2 s ✓ OpenMPI_jll 4.4 s ✓ MPIABI_jll 1.7 s ✓ NLSolversBase 1.3 s ✓ aws_c_auth_jll 4.1 s ✓ mpif_jll 1.6 s ✓ LineSearches 1.6 s ✓ aws_c_s3_jll 6.0 s ✓ Optim 1.6 s ✓ HDF5_jll 5.1 s ✓ SCTransform 10.3 s ✓ HDF5 2.9 s ✓ SingleCell10x 107 dependencies successfully precompiled in 299 seconds. 39 already precompiled. Precompilation completed after 328.51s ################################################################################ # Testing # Testing SCTransform Status `/tmp/jl_beuyUz/Project.toml` [944b1d66] CodecZlib v0.7.9 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [49dc5b4e] KernelDensitySJ v0.2.3 [d41bc354] NLSolversBase v8.0.1 [429524aa] Optim v2.2.2 [92933f4c] ProgressMeter v1.11.0 [f56ea72b] SCTransform v0.4.1 [6c6a2e73] Scratch v1.3.0 [eddce310] SingleCell10x v0.2.2 [276daf66] SpecialFunctions v2.9.0 [c5dd0088] StableHashTraits v2.0.3 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_beuyUz/Manifest.toml` [47edcb42] ADTypes v1.24.0 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [4fba245c] ArrayInterface v7.30.0 [944b1d66] CodecZlib v0.7.9 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.21 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [1a297f60] FillArrays v1.17.0 [6a86dc24] FiniteDiff v2.33.0 [f67ccb44] HDF5 v0.17.3 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [49dc5b4e] KernelDensitySJ v0.2.3 [b964fa9f] LaTeXStrings v1.4.1 [d3d80556] LineSearches v7.7.1 [2ab3a3ac] LogExpFunctions v1.0.1 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v8.0.1 [77ba4419] NaNMath v1.1.4 [429524aa] Optim v2.2.2 [bac558e1] OrderedCollections v2.0.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [92933f4c] ProgressMeter v1.11.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [f2b01f46] Roots v3.0.7 [f56ea72b] SCTransform v0.4.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [eddce310] SingleCell10x v0.2.2 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [c5dd0088] StableHashTraits v2.0.3 [860ef19b] StableRNGs v1.0.4 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.5.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [3bb67fe8] TranscodingStreams v0.11.3 [9d95972d] TupleTools v1.6.0 ⌅ [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.14.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 ⌃ [70f11efc] aws_c_cal_jll v0.9.13+0 ⌅ [73048d1d] aws_c_common_jll v0.12.6+0 ⌃ [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.15+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 ⌃ [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.7+0 ⌅ [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/BYB4a/test/runtests.jl:121 Expression: ≈(preg.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266159062, -2.4601871451393964, -5.423359150735223, -6.36333968385692, -5.487936332352667, -5.324269201840893, -7.796807559990264, -7.823321680342, -7.823367807565069, -5.18899211980677 … -7.834398223389546, -7.787025108523724, -6.699618709529426, -6.209113450752566, -3.8979590260025807, -6.740910353726684, -5.307016057637368, -5.622193904432249, -5.6117532201191045, -7.807912158423634] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2328 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:90 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:121 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Estimating sc parameters: 5%|█▎ | ETA: 0:00:04 Estimating sc parameters: 100%|█████████████████████████| Time: 0:00:00 [ Info: Bandwidth 0.2601508521793458 Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/BYB4a/test/runtests.jl:131 Expression: ≈(preg2.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266159062, -2.4601871451393964, -5.423359150735223, -6.36333968385692, -5.487936332352667, -5.324269201840893, -7.796807559990264, -7.823321680342, -7.823367807565069, -5.18899211980677 … -7.834398223389546, -7.787025108523724, -6.699618709529426, -6.209113450752566, -3.8979590260025807, -6.740910353726684, -5.307016057637368, -5.622193904432249, -5.6117532201191045, -7.807912158423634] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2328 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:90 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:131 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/BYB4a/test/runtests.jl:121 Expression: ≈(preg.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266159062, -2.4601871451393964, -5.423359150735223, -6.36333968385692, -5.487936332352667, -5.324269201840893, -7.796807559990264, -7.823321680342, -7.823367807565069, -5.18899211980677 … -7.834398223389546, -7.787025108523724, -6.699618709529426, -6.209113450752566, -3.8979590260025807, -6.740910353726684, -5.307016057637368, -5.622193904432249, -5.6117532201191045, -7.807912158423634] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2328 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:90 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:121 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [ Info: Bandwidth 0.2601508521793458 Regularized: Test Failed at /home/pkgeval/.julia/packages/SCTransform/BYB4a/test/runtests.jl:131 Expression: ≈(preg2.beta0, preg_ans2.beta0, norm = maxnorm, atol = 0.2) Evaluated: [-6.006485266159062, -2.4601871451393964, -5.423359150735223, -6.36333968385692, -5.487936332352667, -5.324269201840893, -7.796807559990264, -7.823321680342, -7.823367807565069, -5.18899211980677 … -7.834398223389546, -7.787025108523724, -6.699618709529426, -6.209113450752566, -3.8979590260025807, -6.740910353726684, -5.307016057637368, -5.622193904432249, -5.6117532201191045, -7.807912158423634] ≈ [-6.00236595723811, -2.59916456409024, -5.44999123708493, -6.34307096203303, -5.51105849411454, -5.35619029874176, -7.80185766677111, -7.82248269134564, -7.80898791112667, -5.22824243132873 … -7.82684216302398, -7.79210362993775, -6.6674052192929, -6.19544451929233, -3.83925428538092, -6.5523382790553, -5.33990123746732, -5.63815038576103, -5.62827471737618, -7.80747690422806] (norm=maxnorm, atol=0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:32 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [5] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2328 [inlined] [7] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:90 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] macro expansion @ ~/.julia/packages/SCTransform/BYB4a/test/runtests.jl:131 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [ Info: Bandwidth 0.2601508521793458 [ Info: Bandwidth 0.2601508521793458 [ Info: Bandwidth 0.2601508521793458 Test Summary: | Pass Fail Total Time SCTransform.jl | 67 4 71 1m51.2s logcellcounts | 3 3 6.5s 500_PBMC_50genes | 64 4 68 1m44.6s TableType=NamedTuple | 27 2 29 1m06.6s Non-regularized | 8 8 20.7s Regularized | 19 2 21 45.9s TableType=DataFrame | 27 2 29 11.2s Non-regularized | 8 8 3.4s Regularized | 19 2 21 7.7s sctransform | 6 6 4.3s feature_mask | 4 4 0.8s RNG of the outermost testset: Xoshiro(0x49165180514b106d, 0x4f14d60e9155a00a, 0x17db8080482f72f6, 0x09eba823a6fde312, 0xf30fef26ff2a64d7) ERROR: LoadError: Some tests did not pass: 67 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SCTransform/BYB4a/test/runtests.jl:31 Testing failed after 144.66s ERROR: LoadError: Package SCTransform errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 542.08s: package has test failures