Package evaluation to test MendelImpute on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-28T08:25:51.446 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.87s ################################################################################ # Installation # Installing MendelImpute... Resolving package versions... Installed libaom_jll ─────────────────────── v3.14.1+0 Installed MultivariateStats ──────────────── v0.10.5 Installed CommonWorldInvalidations ───────── v1.2.0 Installed Qt6Base_jll ────────────────────── v6.10.2+2 Installed Glob ───────────────────────────── v1.5.0 Installed HarfBuzz_jll ───────────────────── v8.5.1+0 Installed libass_jll ─────────────────────── v0.17.4+0 Installed Libtiff_jll ────────────────────── v4.7.3+0 Installed Libuuid_jll ────────────────────── v2.42.0+0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed NearestNeighbors ───────────────── v0.4.29 Installed OrderedCollections ─────────────── v1.8.2 Installed InlineStrings ──────────────────── v1.4.5 Installed Cairo_jll ──────────────────────── v1.18.7+0 Installed Xorg_libXinerama_jll ───────────── v1.1.7+0 Installed Graphite2_jll ──────────────────── v1.3.16+0 Installed libinput_jll ───────────────────── v1.28.1+0 Installed Xorg_libpciaccess_jll ──────────── v0.19.0+0 Installed PlotThemes ─────────────────────── v3.3.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed HypothesisTests ────────────────── v0.11.8 Installed SentinelArrays ─────────────────── v1.4.10 Installed BSON ───────────────────────────── v0.3.9 Installed FileIO ─────────────────────────── v1.20.0 Installed CpuId ──────────────────────────── v0.3.1 Installed Fontconfig_jll ─────────────────── v2.17.1+0 Installed fzf_jll ────────────────────────── v0.61.1+0 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.10.0 Installed GroupSlices ────────────────────── v0.0.3 Installed Widgets ────────────────────────── v0.6.8 Installed NaNMath ────────────────────────── v1.1.4 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Opus_jll ───────────────────────── v1.6.1+0 Installed QuadGK ─────────────────────────── v2.11.3 Installed Tables ─────────────────────────── v1.14.0 Installed libva_jll ──────────────────────── v2.23.0+0 Installed Arpack ─────────────────────────── v0.5.4 Installed WoodburyMatrices ───────────────── v1.1.0 Installed Ogg_jll ────────────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed Unzip ──────────────────────────── v0.2.0 Installed Reexport ───────────────────────── v1.2.2 Installed DBInterface ────────────────────── v2.7.0 Installed InverseFunctions ───────────────── v0.1.17 Installed Preferences ────────────────────── v1.5.2 Installed Static ─────────────────────────── v1.4.6 Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0 Installed FFMPEG ─────────────────────────── v0.4.5 Installed LERC_jll ───────────────────────── v4.1.0+0 Installed TableTraits ────────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────────── v22.1.7+0 Installed Missings ───────────────────────── v1.2.0 Installed LaTeXStrings ───────────────────── v1.4.1 Installed SortingAlgorithms ──────────────── v1.2.3 Installed Crayons ────────────────────────── v4.2.0 Installed libdrm_jll ─────────────────────── v2.4.134+0 Installed DataStructures ─────────────────── v0.19.6 Installed Xorg_libICE_jll ────────────────── v1.1.2+0 Installed eudev_jll ──────────────────────── v3.2.14+0 Installed UnPack ─────────────────────────── v1.0.2 Installed EpollShim_jll ──────────────────── v0.0.20230411+1 (no artifacts on this platform) Installed Grisu ──────────────────────────── v1.0.2 Installed Format ─────────────────────────── v1.3.7 Installed MacroTools ─────────────────────── v0.5.16 Installed VCFTools ───────────────────────── v0.2.10 Installed FillArrays ─────────────────────── v1.17.0 Installed CodecZstd ──────────────────────── v0.8.7 Installed VectorizationBase ──────────────── v0.21.74 Installed AbstractTrees ──────────────────── v0.4.5 Installed ManualMemory ───────────────────── v0.1.8 Installed DelimitedFiles ─────────────────── v1.9.1 Installed StatsBase ──────────────────────── v0.34.13 Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0 Installed CodecZlib ──────────────────────── v0.7.9 Installed UnicodeFun ─────────────────────── v0.4.1 Installed x264_jll ───────────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed Observables ────────────────────── v0.5.5 Installed ArrayInterface ─────────────────── v7.30.0 Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0 Installed HostCPUFeatures ────────────────── v0.1.18 Installed Memento ────────────────────────── v1.5.0 Installed mtdev_jll ──────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ─────────────── v6.10.2+1 Installed JLSO ───────────────────────────── v2.7.0 Installed Expat_jll ──────────────────────── v2.8.3+0 Installed DataValueInterfaces ────────────── v1.0.0 Installed StructUtils ────────────────────── v2.8.5 Installed Libffi_jll ─────────────────────── v3.4.7+0 Installed LayoutPointers ─────────────────── v0.1.17 Installed Pixman_jll ─────────────────────── v0.46.4+0 Installed MendelImpute ───────────────────── v1.2.6 Installed Clustering ─────────────────────── v0.15.8 Installed IntegerMathUtils ───────────────── v0.1.4 Installed libpng_jll ─────────────────────── v1.6.58+0 Installed libdecor_jll ───────────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ────────────── v1.2.4+0 Installed IrrationalConstants ────────────── v0.2.6 Installed ArrayLayouts ───────────────────── v1.12.2 Installed ColorVectorSpace ───────────────── v0.11.0 Installed Contour ────────────────────────── v0.6.3 Installed Interpolations ─────────────────── v0.16.3 Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0 Installed FFMPEG_jll ─────────────────────── v8.1.2+0 Installed Roots ──────────────────────────── v3.0.7 Installed BufferedStreams ────────────────── v1.2.2 Installed Qt6Declarative_jll ─────────────── v6.10.2+2 Installed libfdk_aac_jll ─────────────────── v2.0.4+0 Installed PDMats ─────────────────────────── v0.11.41 Installed StableRNGs ─────────────────────── v1.0.4 Installed Qt6Svg_jll ─────────────────────── v6.10.2+0 Installed PooledArrays ───────────────────── v1.4.3 Installed Scratch ────────────────────────── v1.3.0 Installed Plots ──────────────────────────── v1.41.7 Installed SQLite ─────────────────────────── v1.8.2 Installed CompositionsBase ───────────────── v0.1.2 Installed TableOperations ────────────────── v1.2.0 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.5 Installed CommonSolve ────────────────────── v0.2.14 Installed Rmath_jll ──────────────────────── v0.5.2+0 Installed KernelDensity ──────────────────── v0.6.12 Installed SLEEFPirates ───────────────────── v0.6.46 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed CSV ────────────────────────────── v0.10.17 Installed RelocatableFolders ─────────────── v1.0.1 Installed AliasTables ────────────────────── v1.1.3 Installed JLFzf ──────────────────────────── v0.1.11 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed Combinatorics ──────────────────── v1.1.0 Installed Xorg_libXi_jll ─────────────────── v1.8.4+0 Installed ColorSchemes ───────────────────── v3.31.0 Installed RecipesBase ────────────────────── v1.3.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DataAPI ────────────────────────── v1.16.0 Installed SIMD ───────────────────────────── v3.7.2 Installed libevdev_jll ───────────────────── v1.13.4+0 Installed InvertedIndices ────────────────── v1.3.1 Installed Measures ───────────────────────── v0.3.3 Installed Wayland_jll ────────────────────── v1.24.0+0 Installed Xorg_libxkbfile_jll ────────────── v1.2.0+0 Installed StaticArraysCore ───────────────── v1.4.4 Installed AbstractFFTs ───────────────────── v1.5.0 Installed StaticArrays ───────────────────── v1.9.19 Installed Latexify ───────────────────────── v0.16.12 Installed Colors ─────────────────────────── v0.13.1 Installed Glib_jll ───────────────────────── v2.88.3+0 Installed SciMLPublic ────────────────────── v1.3.0 Installed StringManipulation ─────────────── v0.5.0 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0 Installed ColorTypes ─────────────────────── v0.12.1 Installed Vulkan_Loader_jll ──────────────── v1.3.243+0 Installed LogExpFunctions ────────────────── v1.0.1 Installed Requires ───────────────────────── v1.3.1 Installed JSON ───────────────────────────── v1.7.1 Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0 Installed Parsers ────────────────────────── v2.8.7 Installed Gamma ──────────────────────────── v1.2.0 Installed Arpack_jll ─────────────────────── v3.5.2+0 Installed Rmath ──────────────────────────── v0.9.0 Installed Distributions ──────────────────── v0.25.131 Installed BioGenerics ────────────────────── v0.1.5 Installed PrettyTables ───────────────────── v3.4.8 Installed StatsFuns ──────────────────────── v2.2.1 Installed StatsPlots ─────────────────────── v0.15.8 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0 Installed Xorg_xkeyboard_config_jll ──────── v2.47.0+2 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed Xorg_libSM_jll ─────────────────── v1.2.6+0 Installed XZ_jll ─────────────────────────── v5.8.3+0 Installed x265_jll ───────────────────────── v4.1.0+0 Installed JLLWrappers ────────────────────── v1.8.0 Installed Primes ─────────────────────────── v0.5.7 Installed WeakRefStrings ─────────────────── v1.4.3 Installed DataFrames ─────────────────────── v1.8.2 Installed Pango_jll ──────────────────────── v1.58.0+0 Installed ThreadingUtilities ─────────────── v0.5.6 Installed GR_jll ─────────────────────────── v0.73.27+0 Installed Accessors ──────────────────────── v0.1.45 Installed BGZFStreams ────────────────────── v0.3.2 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed RecipesPipeline ────────────────── v0.6.12 Installed JpegTurbo_jll ──────────────────── v3.2.0+1 Installed VariantCallFormat ──────────────── v0.5.9 Installed FilePathsBase ──────────────────── v0.9.24 Installed FFTA ───────────────────────────── v0.3.1 Installed JLD2 ───────────────────────────── v0.4.55 Installed Dbus_jll ───────────────────────── v1.16.2+0 Installed Adapt ──────────────────────────── v4.7.0 Installed Libmount_jll ───────────────────── v2.42.0+0 Installed HypergeometricFunctions ────────── v0.3.30 Installed ConstructionBase ───────────────── v1.6.0 Installed Xorg_libX11_jll ────────────────── v1.8.13+0 Installed TranscodingStreams ─────────────── v0.9.13 Installed Compat ─────────────────────────── v4.18.1 Installed PlotUtils ──────────────────────── v1.4.4 Installed LoopVectorization ──────────────── v0.12.174 Installed GR ─────────────────────────────── v0.73.27 Installed Statistics ─────────────────────── v1.11.1 Installed dlfcn_win32_jll ────────────────── v1.4.2+0 (no artifacts on this platform) Installed ProgressMeter ──────────────────── v1.11.0 Installed StatsAPI ───────────────────────── v1.8.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed TensorCore ─────────────────────── v0.1.1 Installed LazyArrays ─────────────────────── v1.10.0 Installed PrecompileTools ────────────────── v1.3.4 Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0 Installed xkbcommon_jll ──────────────────── v1.13.0+0 Installed GettextRuntime_jll ─────────────── v0.22.4+0 Installed FriBidi_jll ────────────────────── v1.0.17+0 Installed GLFW_jll ───────────────────────── v3.5.1+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed Ratios ─────────────────────────── v0.4.5 Installed CPUSummary ─────────────────────── v0.2.7 Installed ChainRulesCore ─────────────────── v1.26.1 Installed MuladdMacro ────────────────────── v0.2.7 Installed LAME_jll ───────────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ────────────── v0.9.12+0 Installed libvorbis_jll ──────────────────── v1.3.8+0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.4.0 Installed SpecialFunctions ───────────────── v2.9.0 Installed MatrixFactorizations ───────────── v2.2.0 Installed FixedPointNumbers ──────────────── v0.8.6 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed FreeType2_jll ──────────────────── v2.14.3+1 Installed Automa ─────────────────────────── v1.2.0 Installed Xorg_libXext_jll ───────────────── v1.3.8+0 Installed SQLite_jll ─────────────────────── v3.53.2+0 Installed Showoff ────────────────────────── v1.0.3 Installed Qt6Wayland_jll ─────────────────── v6.10.2+1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Xorg_libXrandr_jll ─────────────── v1.5.6+0 Installed SnpArrays ──────────────────────── v0.3.23 Installed BGEN ───────────────────────────── v0.1.17 Installing 81 artifacts Installed artifact Xorg_xcb_util_keysyms 14.3 KiB Installed artifact LERC 220.3 KiB Installed artifact Xorg_xcb_util_cursor 24.2 KiB Installed artifact eudev 2.3 MiB Installed artifact Xorg_xkbcomp 230.5 KiB Installed artifact Xorg_libxcb 1.3 MiB Installed artifact LAME 243.9 KiB Installed artifact Xorg_libXcursor 137.4 KiB Installed artifact Ogg 213.4 KiB Installed artifact Rmath 111.3 KiB Installed artifact GettextRuntime 345.6 KiB Installed artifact Xorg_libX11 2.3 MiB Installed artifact libdrm 304.7 KiB Installed artifact Xorg_xtrans 39.5 KiB Installed artifact Wayland 266.5 KiB Installed artifact FriBidi 67.6 KiB Installed artifact libfdk_aac 2.4 MiB Installed artifact Libmount 3.4 MiB Installed artifact Xorg_libpciaccess 23.4 KiB Installed artifact Pango 1.3 MiB Installed artifact libvorbis 226.3 KiB Installed artifact JpegTurbo 713.4 KiB Installed artifact xkbcommon 252.5 KiB Installed artifact Fontconfig 443.8 KiB Installed artifact Xorg_libXi 499.8 KiB Installed artifact GLFW 162.5 KiB Installed artifact Xorg_libSM 104.8 KiB Installed artifact Libglvnd 482.2 KiB Installed artifact GR 15.8 MiB Installed artifact mtdev 55.5 KiB Installed artifact libinput 555.0 KiB Installed artifact Vulkan_Loader 146.2 KiB Installed artifact Expat 255.9 KiB Installed artifact Xorg_libXau 25.8 KiB Installed artifact Pixman 343.0 KiB Installed artifact Libtiff 1.7 MiB Installed artifact Libiconv 1022.9 KiB Installed artifact HarfBuzz 1.2 MiB Installed artifact x264 908.7 KiB Installed artifact Qt6ShaderTools 1.7 MiB Installed artifact Opus 792.2 KiB Installed artifact SQLite 1.2 MiB Installed artifact libass 361.1 KiB Installed artifact Libffi 39.2 KiB Installed artifact Xorg_libxkbfile 81.0 KiB Installed artifact x265 1.1 MiB Installed artifact Bzip2 152.8 KiB Installed artifact Dbus 398.5 KiB Installed artifact FreeType2 1.2 MiB Installed artifact libaom 3.9 MiB Installed artifact Xorg_libXrender 174.0 KiB Installed artifact Xorg_xcb_util_renderutil 22.4 KiB Installed artifact Xorg_libXfixes 41.4 KiB Installed artifact Xorg_xkeyboard_config 375.9 KiB Installed artifact Arpack 110.5 KiB Installed artifact libpng 234.7 KiB Installed artifact libva 187.1 KiB Installed artifact OpenSpecFun 105.4 KiB Installed artifact fzf 3.0 MiB Installed artifact Xorg_libXdmcp 49.9 KiB Installed artifact Xorg_libXinerama 21.7 KiB Installed artifact libevdev 91.2 KiB Installed artifact Glib 4.2 MiB Installed artifact Xorg_xcb_util 26.3 KiB Installed artifact Xorg_libXext 187.3 KiB Installed artifact XZ 1018.2 KiB Installed artifact Xorg_xcb_util_image 33.8 KiB Installed artifact Ghostscript 30.0 MiB Installed artifact Xorg_libXrandr 69.9 KiB Installed artifact Graphite2 109.8 KiB Installed artifact Cairo 1.5 MiB Installed artifact LLVMOpenMP 573.2 KiB Installed artifact libdecor 36.5 KiB Installed artifact Xorg_xcb_util_wm 95.5 KiB Installed artifact Xorg_libICE 254.5 KiB Installed artifact FFMPEG 10.2 MiB Installed artifact Qt6Wayland 930.6 KiB Installed artifact Qt6Base 17.1 MiB Installed artifact Qt6Svg 303.6 KiB Installed artifact Libuuid 1.9 MiB Installed artifact Qt6Declarative 15.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [e47305d1] + MendelImpute v1.2.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.30.0 [4c555306] + ArrayLayouts v1.12.2 [67c07d97] + Automa v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [fbb218c0] + BSON v0.3.9 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.17 [d360d2e6] + ChainRulesCore v1.26.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.9 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [f70d9fcc] + CommonWorldInvalidations v1.2.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.2.0 [a10d1c49] + DBInterface v2.7.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [c87230d0] + FFMPEG v0.4.5 [b86e33f2] + FFTA v0.3.1 [5789e2e9] + FileIO v1.20.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.27 [a0844989] + Gamma v1.2.0 [c27321d9] + Glob v1.5.0 [42e2da0e] + Grisu v1.0.2 [d853e229] + GroupSlices v0.0.3 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.30 [09f84164] + HypothesisTests v0.11.8 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.4 [a98d9a8b] + Interpolations v0.16.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.8.0 [9da8a3cd] + JLSO v2.7.0 [682c06a0] + JSON v1.7.1 [5ab0869b] + KernelDensity v0.6.12 [b964fa9f] + LaTeXStrings v1.4.1 [23fbe1c1] + Latexify v0.16.12 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [5078a376] + LazyArrays v1.10.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [442fdcdd] + Measures v0.3.3 [f28f55f0] + Memento v1.5.0 [e47305d1] + MendelImpute v1.2.6 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.7 [6f286f6a] + MultivariateStats v0.10.5 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.29 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.41 ⌅ [69de0a69] + Parsers v2.8.7 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.7 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [0aa819cd] + SQLite v1.8.2 [431bcebd] + SciMLPublic v1.3.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [992d4aef] + Showoff v1.0.3 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.4.6 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [f3b207a7] + StatsPlots v0.15.8 [892a3eda] + StringManipulation v0.5.0 [ec057cc2] + StructUtils v2.8.5 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [cc8bc4a8] + Widgets v0.6.8 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.7+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.8.3+0 ⌅ [b22a6f82] + FFMPEG_jll v8.1.2+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.5.1+0 [d2c73de3] + GR_jll v0.73.27+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [7746bdde] + Glib_jll v2.88.3+0 [3b182d85] + Graphite2_jll v1.3.16+0 ⌅ [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.2.0+1 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v22.1.7+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.3+0 [38a345b3] + Libuuid_jll v2.42.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.1+0 [36c8627f] + Pango_jll v1.58.0+0 [30392449] + Pixman_jll v0.46.4+0 [c0090381] + Qt6Base_jll v6.10.2+2 [629bc702] + Qt6Declarative_jll v6.10.2+2 [ce943373] + Qt6ShaderTools_jll v6.10.2+1 [6de9746b] + Qt6Svg_jll v6.10.2+0 [e99dba38] + Qt6Wayland_jll v6.10.2+1 [f50d1b31] + Rmath_jll v0.5.2+0 [76ed43ae] + SQLite_jll v3.53.2+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.3+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.4+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.47.0+2 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [35ca27e7] + eudev_jll v3.2.14+0 ⌅ [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.14.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [8e53e030] + libdrm_jll v2.4.134+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 30.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 6.2 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.1 s ✓ MacroTools 1.3 s ✓ InlineStrings 0.5 s ✓ Reexport 0.6 s ✓ TensorCore 0.9 s ✓ ConstructionBase 1.9 s ✓ IrrationalConstants 0.6 s ✓ Measures 0.6 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.8 s ✓ Format 0.8 s ✓ Observables 1.6 s ✓ Combinatorics 0.6 s ✓ Contour 0.5 s ✓ LaTeXStrings 0.7 s ✓ Glob 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.6 s ✓ StableRNGs 0.5 s ✓ IfElse 0.5 s ✓ PtrArrays 1.0 s ✓ Grisu 1.0 s ✓ ManualMemory 0.6 s ✓ Adapt 0.9 s ✓ DataAPI 0.9 s ✓ InvertedIndices 0.5 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 1.0 s ✓ AbstractTrees 0.8 s ✓ AbstractFFTs 0.9 s ✓ WorkerUtilities 2.2 s ✓ FillArrays 0.7 s ✓ IntegerMathUtils 0.6 s ✓ UnPack 0.6 s ✓ DBInterface 1.0 s ✓ OrderedCollections 0.7 s ✓ GroupSlices 1.1 s ✓ DocStringExtensions 1.2 s ✓ BSON 0.8 s ✓ Unzip 1.1 s ✓ OffsetArrays 0.8 s ✓ BufferedStreams 0.5 s ✓ SIMDTypes 0.9 s ✓ IteratorInterfaceExtensions 1.8 s ✓ Crayons 0.7 s ✓ NaNMath 0.7 s ✓ Requires 2.2 s ✓ ProgressMeter 0.7 s ✓ DelimitedFiles 1.7 s ✓ WoodburyMatrices 1.1 s ✓ Scratch 3.4 s ✓ SentinelArrays 1.6 s ✓ StructUtils 2.9 s ✓ CpuId 2.0 s ✓ PDMats 1.6 s ✓ Compat 1.5 s ✓ Preferences 2.2 s ✓ TranscodingStreams 3.6 s ✓ UnicodeFun 0.8 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.5 s ✓ Statistics → SparseArraysExt 2.3 s ✓ FixedPointNumbers 1.2 s ✓ Distances 0.9 s ✓ AliasTables 1.1 s ✓ Showoff 1.2 s ✓ ThreadingUtilities 1.0 s ✓ ArrayInterface 1.3 s ✓ Adapt → AdaptSparseArraysExt 0.8 s ✓ Missings 0.8 s ✓ PooledArrays 0.9 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.4 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.6 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.8 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.8 s ✓ Primes 3.2 s ✓ DataStructures 1.2 s ✓ LogExpFunctions 0.6 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.5 s ✓ TableTraits 0.5 s ✓ Ratios 4.9 s ✓ Memento 7.6 s ✓ FileIO 1.7 s ✓ AxisAlgorithms 1.2 s ✓ RelocatableFolders 0.9 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ PrecompileTools 1.2 s ✓ JLLWrappers 1.5 s ✓ BioGenerics 2.4 s ✓ CodecZstd 1.4 s ✓ CodecZlib 2.3 s ✓ ColorTypes 1.4 s ✓ Distances → DistancesSparseArraysExt 1.0 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.5 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 4.3 s ✓ Accessors 0.8 s ✓ SortingAlgorithms 1.8 s ✓ QuadGK 0.9 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.5 s ✓ Gamma 1.7 s ✓ Tables 0.9 s ✓ Ratios → RatiosFixedPointNumbersExt 2.0 s ✓ ChainRulesCore 1.7 s ✓ FilePathsBase 6.0 s ✓ StringManipulation 14.0 s ✓ SIMD 1.9 s ✓ CommonSolve 13.1 s ✓ StaticArrays 1.7 s ✓ SciMLPublic 1.3 s ✓ CommonWorldInvalidations 2.2 s ✓ MuladdMacro 16.9 s ✓ Automa 2.9 s ✓ RecipesBase 10.1 s ✓ Parsers 42.3 s ✓ JLD2 1.7 s ✓ Libffi_jll 1.5 s ✓ Xorg_libICE_jll 1.2 s ✓ eudev_jll 1.1 s ✓ mtdev_jll 1.1 s ✓ Bzip2_jll 1.1 s ✓ XZ_jll 1.1 s ✓ Rmath_jll 1.1 s ✓ OpenSpecFun_jll 1.3 s ✓ Xorg_xtrans_jll 1.0 s ✓ Opus_jll 0.9 s ✓ x265_jll 1.0 s ✓ fzf_jll 1.3 s ✓ libpng_jll 0.9 s ✓ Arpack_jll 0.7 s ✓ EpollShim_jll 1.0 s ✓ Libmount_jll 0.9 s ✓ libfdk_aac_jll 1.0 s ✓ Libuuid_jll 0.8 s ✓ FriBidi_jll 0.9 s ✓ LERC_jll 1.1 s ✓ Xorg_libXau_jll 0.8 s ✓ dlfcn_win32_jll 1.2 s ✓ Ogg_jll 1.3 s ✓ libevdev_jll 1.3 s ✓ LAME_jll 1.2 s ✓ Graphite2_jll 1.1 s ✓ x264_jll 1.3 s ✓ Xorg_libpciaccess_jll 1.3 s ✓ LLVMOpenMP_jll 1.1 s ✓ Libiconv_jll 1.3 s ✓ libaom_jll 1.2 s ✓ Xorg_libXdmcp_jll 1.7 s ✓ Expat_jll 2.3 s ✓ JpegTurbo_jll 1.4 s ✓ BGZFStreams 1.8 s ✓ ColorTypes → StyledStringsExt 5.3 s ✓ Colors 1.5 s ✓ ColorVectorSpace 1.9 s ✓ Accessors → TestExt 3.1 s ✓ Accessors → LinearAlgebraExt 4.9 s ✓ StatsBase 1.8 s ✓ HypergeometricFunctions 1.2 s ✓ TableOperations 0.9 s ✓ StructUtils → StructUtilsTablesExt 1.5 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.6 s ✓ Distances → DistancesChainRulesCoreExt 0.6 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2.8 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2.8 s ✓ FilePathsBase → FilePathsBaseTestExt 0.9 s ✓ FilePathsBase → FilePathsBaseMmapExt 40.8 s ✓ PrettyTables 1.4 s ✓ StaticArrays → StaticArraysStatisticsExt 1.6 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.3 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.4 s ✓ Adapt → AdaptStaticArraysExt 1.9 s ✓ FillArrays → FillArraysStaticArraysExt 1.6 s ✓ Accessors → StaticArraysExt 1.9 s ✓ Static 2.1 s ✓ FFTA 9.3 s ✓ JSON 0.9 s ✓ InlineStrings → ParsersExt 1.3 s ✓ Xorg_libSM_jll 1.9 s ✓ CodecBzip2 1.1 s ✓ FreeType2_jll 2.0 s ✓ CodecXz 1.4 s ✓ Rmath 4.7 s ✓ SpecialFunctions 2.5 s ✓ JLFzf 1.2 s ✓ Arpack 1.1 s ✓ SQLite_jll 1.2 s ✓ libvorbis_jll 1.1 s ✓ libinput_jll 1.4 s ✓ libdrm_jll 1.1 s ✓ Pixman_jll 1.4 s ✓ GettextRuntime_jll 1.1 s ✓ Xorg_libxcb_jll 1.4 s ✓ Dbus_jll 1.2 s ✓ Wayland_jll 1.2 s ✓ Ghostscript_jll 1.3 s ✓ Libtiff_jll [ Info: Compiling VCF parser... 12.7 s ✓ VariantCallFormat 1.9 s ✓ Widgets 8.9 s ✓ ColorSchemes 4.6 s ✓ Roots 1.7 s ✓ PDMats → StatsBaseExt 7.9 s ✓ JLSO 73.5 s ✓ DataFrames 7.5 s ✓ NearestNeighbors 4.4 s ✓ Interpolations 24.3 s ✓ ArrayLayouts 0.9 s ✓ BitTwiddlingConvenienceFunctions 2.7 s ✓ CPUSummary 2.9 s ✓ StaticArrayInterface 10.0 s ✓ BenchmarkTools 2.7 s ✓ WeakRefStrings 1.4 s ✓ Fontconfig_jll 3.1 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.2 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.1 s ✓ StatsFuns 1.1 s ✓ Glib_jll 1.4 s ✓ Xorg_xcb_util_jll 1.1 s ✓ Xorg_libX11_jll 5.4 s ✓ Latexify 15.6 s ✓ PlotUtils 0.9 s ✓ Roots → RootsChainRulesCoreExt 4.0 s ✓ Clustering 5.4 s ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 4.1 s ✓ MatrixFactorizations 1.7 s ✓ HostCPUFeatures 1.7 s ✓ PolyesterWeave 0.9 s ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1.4 s ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 0.9 s ✓ CloseOpenIntervals 1.0 s ✓ LayoutPointers 21.5 s ✓ CSV 4.1 s ✓ SQLite 3.5 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 1.0 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 1.3 s ✓ Xorg_xcb_util_renderutil_jll 1.3 s ✓ Xorg_xcb_util_wm_jll 1.3 s ✓ Xorg_xcb_util_image_jll 2.1 s ✓ Xorg_xcb_util_keysyms_jll 1.2 s ✓ Xorg_libXfixes_jll 1.2 s ✓ Xorg_libXrender_jll 1.2 s ✓ Xorg_libXext_jll 1.3 s ✓ Xorg_libxkbfile_jll 2.8 s ✓ Latexify → SparseArraysExt 6.5 s ✓ Latexify → DataFramesExt 9.0 s ✓ PlotThemes 7.8 s ✓ RecipesPipeline WARNING: Constructor for type "MemoryLayout" was extended in `LazyArrays` without explicit qualification or import. NOTE: Assumed "MemoryLayout" refers to `ArrayLayouts.MemoryLayout`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function MemoryLayout end`. Hint: To silence the warning, qualify `MemoryLayout` as `ArrayLayouts.MemoryLayout` in the method signature or explicitly `import ArrayLayouts: MemoryLayout`. 8.4 s ✓ LazyArrays 16.8 s ✓ VectorizationBase 4.2 s ✓ BGEN 10.3 s ✓ Distributions 1.3 s ✓ Xorg_xcb_util_cursor_jll 1.3 s ✓ Xorg_libXcursor_jll 1.2 s ✓ Xorg_libXrandr_jll 1.2 s ✓ Xorg_libXinerama_jll 1.2 s ✓ Xorg_libXi_jll 1.2 s ✓ Cairo_jll 1.2 s ✓ libva_jll 1.3 s ✓ Libglvnd_jll 1.2 s ✓ Xorg_xkbcomp_jll 5.2 s ✓ LazyArrays → LazyArraysStaticArraysExt 3.0 s ✓ SLEEFPirates 4.6 s ✓ Distributions → DistributionsTestExt 4.0 s ✓ Distributions → DistributionsChainRulesCoreExt 4.6 s ✓ HypothesisTests 4.6 s ✓ MultivariateStats 1.2 s ✓ HarfBuzz_jll 1.0 s ✓ Xorg_xkeyboard_config_jll 34.6 s ✓ LoopVectorization 5.3 s ✓ KernelDensity 6.2 s ✓ VCFTools 1.1 s ✓ libass_jll 1.1 s ✓ Pango_jll 1.1 s ✓ xkbcommon_jll 2.9 s ✓ LoopVectorization → SpecialFunctionsExt 1.2 s ✓ FFMPEG_jll 1.1 s ✓ Vulkan_Loader_jll 1.2 s ✓ libdecor_jll 23.5 s ✓ SnpArrays 1.0 s ✓ FFMPEG 1.3 s ✓ Qt6Base_jll 1.3 s ✓ GLFW_jll 1.4 s ✓ Qt6ShaderTools_jll 1.4 s ✓ Qt6Svg_jll 2.0 s ✓ GR_jll 1.4 s ✓ Qt6Declarative_jll 1.5 s ✓ Qt6Wayland_jll 5.4 s ✓ GR 109.5 s ✓ Plots 18.6 s ✓ Plots → FileIOExt 18.0 s ✓ StatsPlots 30.3 s ✓ MendelImpute 294 dependencies successfully precompiled in 1064 seconds. 41 already precompiled. 2 dependencies had output during precompilation: ┌ LazyArrays │ WARNING: Constructor for type "MemoryLayout" was extended in `LazyArrays` without explicit qualification or import. │ NOTE: Assumed "MemoryLayout" refers to `ArrayLayouts.MemoryLayout`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MemoryLayout end`. │ Hint: To silence the warning, qualify `MemoryLayout` as `ArrayLayouts.MemoryLayout` in the method signature or explicitly `import ArrayLayouts: MemoryLayout`. └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 1044.12s ################################################################################ # Testing # Testing MendelImpute Status `/tmp/jl_1wdZnD/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [6e4b80f9] BenchmarkTools v1.8.0 [336ed68f] CSV v0.10.17 [a93c6f00] DataFrames v1.8.2 [b4f34e82] Distances v0.10.12 [5789e2e9] FileIO v1.20.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [d853e229] GroupSlices v0.0.3 ⌅ [033835bb] JLD2 v0.4.55 [9da8a3cd] JLSO v2.7.0 ⌅ [5078a376] LazyArrays v1.10.0 [e47305d1] MendelImpute v1.2.6 [92933f4c] ProgressMeter v1.11.0 [4e780e97] SnpArrays v0.3.23 [276daf66] SpecialFunctions v2.9.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.13 [f3b207a7] StatsPlots v0.15.8 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1wdZnD/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.30.0 [4c555306] ArrayLayouts v1.12.2 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [6db4b851] BGEN v0.1.17 [28d598bf] BGZFStreams v0.3.2 [fbb218c0] BSON v0.3.9 [6e4b80f9] BenchmarkTools v1.8.0 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.17 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.9 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.14 [f70d9fcc] CommonWorldInvalidations v1.2.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [a10d1c49] DBInterface v2.7.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [c87230d0] FFMPEG v0.4.5 [b86e33f2] FFTA v0.3.1 [5789e2e9] FileIO v1.20.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 [28b8d3ca] GR v0.73.27 [a0844989] Gamma v1.2.0 [c27321d9] Glob v1.5.0 [42e2da0e] Grisu v1.0.2 [d853e229] GroupSlices v0.0.3 [3e5b6fbb] HostCPUFeatures v0.1.18 [34004b35] HypergeometricFunctions v0.3.30 [09f84164] HypothesisTests v0.11.8 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.4 [a98d9a8b] Interpolations v0.16.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.55 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.8.0 [9da8a3cd] JLSO v2.7.0 [682c06a0] JSON v1.7.1 [5ab0869b] KernelDensity v0.6.12 [b964fa9f] LaTeXStrings v1.4.1 [23fbe1c1] Latexify v0.16.12 [10f19ff3] LayoutPointers v0.1.17 ⌅ [5078a376] LazyArrays v1.10.0 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 ⌅ [a3b82374] MatrixFactorizations v2.2.0 [442fdcdd] Measures v0.3.3 [f28f55f0] Memento v1.5.0 [e47305d1] MendelImpute v1.2.6 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.7 [6f286f6a] MultivariateStats v0.10.5 [77ba4419] NaNMath v1.1.4 [b8a86587] NearestNeighbors v0.4.29 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.41 ⌅ [69de0a69] Parsers v2.8.7 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.7 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.7 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [0aa819cd] SQLite v1.8.2 [431bcebd] SciMLPublic v1.3.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [992d4aef] Showoff v1.0.3 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.4.6 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.19 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 [f3b207a7] StatsPlots v0.15.8 [892a3eda] StringManipulation v0.5.0 [ec057cc2] StructUtils v2.8.5 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [41fe7b60] Unzip v0.2.0 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [cc8bc4a8] Widgets v0.6.8 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.7+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.8.3+0 ⌅ [b22a6f82] FFMPEG_jll v8.1.2+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.14.3+1 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.5.1+0 [d2c73de3] GR_jll v0.73.27+0 ⌅ [b0724c58] GettextRuntime_jll v0.22.4+0 [61579ee1] Ghostscript_jll v9.55.1+0 [7746bdde] Glib_jll v2.88.3+0 [3b182d85] Graphite2_jll v1.3.16+0 ⌅ [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.2.0+1 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.1.0+0 [1d63c593] LLVMOpenMP_jll v22.1.7+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.42.0+0 [89763e89] Libtiff_jll v4.7.3+0 [38a345b3] Libuuid_jll v2.42.0+0 [e7412a2a] Ogg_jll v1.3.6+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.1+0 [36c8627f] Pango_jll v1.58.0+0 [30392449] Pixman_jll v0.46.4+0 [c0090381] Qt6Base_jll v6.10.2+2 [629bc702] Qt6Declarative_jll v6.10.2+2 [ce943373] Qt6ShaderTools_jll v6.10.2+1 [6de9746b] Qt6Svg_jll v6.10.2+0 [e99dba38] Qt6Wayland_jll v6.10.2+1 [f50d1b31] Rmath_jll v0.5.2+0 [76ed43ae] SQLite_jll v3.53.2+0 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.24.0+0 [ffd25f8a] XZ_jll v5.8.3+0 [f67eecfb] Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.4+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.47.0+2 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [35ca27e7] eudev_jll v3.2.14+0 ⌅ [214eeab7] fzf_jll v0.61.1+0 [a4ae2306] libaom_jll v3.14.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [8e53e030] libdrm_jll v2.4.134+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.58+0 [9a156e7d] libva_jll v2.23.0+0 [f27f6e37] libvorbis_jll v1.3.8+0 [009596ad] mtdev_jll v1.1.7+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time search breakpoints | 8 8 2.2s Test Summary: | Pass Total Time intersect code | 9 9 0.6s Test Summary: | Pass Total Time dynamic programming | 10 10 3.2s ┌ Warning: accessing `Type.name` is deprecated without replacement. If for detection, use `Base.isType(x)`. │ caller = ProgressMeter.Progress(n::Int64, dt::Int64, desc::String, barlen::Nothing, color::Symbol, output::Base.PipeEndpoint; offset::Int64) at deprecated.jl:1 └ @ ProgressMeter ~/.julia/packages/ProgressMeter/N660J/src/deprecated.jl:1 ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Importing genotype file... 0%| | ETA: 4:20:32 Importing genotype file... 100%|█████████████████████████| Time: 0:00:06 importing reference data... 24%|█████▊ | ETA: 0:00:16 importing reference data... 49%|███████████▊ | ETA: 0:00:10 importing reference data... 74%|█████████████████▊ | ETA: 0:00:05 importing reference data... 98%|███████████████████████▋| ETA: 0:00:00 importing reference data... 100%|████████████████████████| Time: 0:00:20 132.675056 seconds (220.06 M allocations: 12.047 GiB, 2.97% gc time, 78.74% compilation time: <1% of which was recompilation) 15.087884 seconds (17.47 M allocations: 1.111 GiB, 5.70% gc time, 98.87% compilation time) Test Summary: | Pass Total Time compress | 11 11 2m28.3s Number of threads = 1 Importing reference haplotype data... Computing optimal haplotypes... 12%|██▌ | ETA: 0:01:40 Computing optimal haplotypes... 100%|████████████████████| Time: 0:00:15 Total windows = 16, averaging ~ 708 unique haplotypes per window. Timings: Data import = 1.03134 seconds import target data = 0.8446 seconds import compressed haplotypes = 0.186737 seconds Computing haplotype pair = 17.7009 seconds BLAS3 mul! to get M and N = 0.137096 seconds per thread haplopair search = 1.2188 seconds per thread initializing missing = 0.0087589 seconds per thread allocating and viewing = 0.0261134 seconds per thread index conversion = 9.1759e-5 seconds per thread Phasing by win-win intersection = 5.08743 seconds Window-by-window intersection = 0.00379998 seconds per thread Breakpoint search = 1.75384 seconds per thread Recording result = 0.000953184 seconds per thread Imputation = 6.27044 seconds Imputing missing = 2.6173 seconds Writing to file = 3.65314 seconds Total time = 30.3106 seconds 43.089774 seconds (30.39 M allocations: 2.021 GiB, 3.61% gc time, 94.07% compilation time) Test Summary: | Pass Total Time impute & phasing | 10 10 1m22.3s Number of threads = 1 Importing reference haplotype data... Total windows = 16, averaging ~ 708 unique haplotypes per window. Timings: Data import = 0.404714 seconds import target data = 0.238805 seconds import compressed haplotypes = 0.165909 seconds Computing haplotype pair = 1.37533 seconds BLAS3 mul! to get M and N = 0.122661 seconds per thread haplopair search = 1.21309 seconds per thread initializing missing = 0.00862864 seconds per thread allocating and viewing = 0.026308 seconds per thread index conversion = 7.1909e-5 seconds per thread Phasing by win-win intersection = 0.138425 seconds Window-by-window intersection = 0.00239626 seconds per thread Breakpoint search = 0.131201 seconds per thread Recording result = 0.000899083 seconds per thread Imputation = 0.722629 seconds Imputing missing = 0.0483374 seconds Writing to file = 0.674292 seconds Total time = 2.64143 seconds 2.641530 seconds (1.70 M allocations: 150.689 MiB, 4.14% gc time) Number of threads = 1 Importing reference haplotype data... Total windows = 16, averaging ~ 708 unique haplotypes per window. Timings: Data import = 2.83594 seconds import target data = 2.68478 seconds import compressed haplotypes = 0.151164 seconds Computing haplotype pair = 1.42851 seconds BLAS3 mul! to get M and N = 0.125628 seconds per thread haplopair search = 1.17837 seconds per thread initializing missing = 0.00898855 seconds per thread allocating and viewing = 0.11061 seconds per thread index conversion = 7.0199e-5 seconds per thread Phasing by win-win intersection = 0.128886 seconds Window-by-window intersection = 0.00226418 seconds per thread Breakpoint search = 0.122423 seconds per thread Recording result = 0.000817673 seconds per thread Imputation = 1.6502 seconds Imputing missing = 0.0470646 seconds Writing to file = 1.60314 seconds Total time = 6.04393 seconds 6.044314 seconds (1.56 M allocations: 151.845 MiB, 1.05% gc time, 61.22% compilation time) Number of threads = 1 Importing reference haplotype data... Total windows = 16, averaging ~ 708 unique haplotypes per window. Timings: Data import = 1.64141 seconds import target data = 1.49813 seconds import compressed haplotypes = 0.143278 seconds Computing haplotype pair = 4.22745 seconds BLAS3 mul! to get M and N = 0.127647 seconds per thread haplopair search = 1.22985 seconds per thread initializing missing = 0.0105124 seconds per thread allocating and viewing = 0.0274063 seconds per thread index conversion = 7.1858e-5 seconds per thread Phasing by win-win intersection = 3.88352 seconds Window-by-window intersection = 0.00256215 seconds per thread Breakpoint search = 1.82214 seconds per thread Recording result = 0.00095633 seconds per thread Imputation = 2.69018 seconds Imputing missing = 2.15639 seconds Writing to file = 0.533787 seconds Total time = 12.4429 seconds 12.467366 seconds (5.89 M allocations: 375.236 MiB, 0.74% gc time, 77.24% compilation time) Test Summary: | Pass Total Time PLINK and dosage inputs | 2 2 25.9s Number of threads = 1 Importing reference haplotype data... Total windows = 16, averaging ~ 708 unique haplotypes per window. Timings: Data import = 0.369195 seconds import target data = 0.226775 seconds import compressed haplotypes = 0.14242 seconds Computing haplotype pair = 1.38371 seconds BLAS3 mul! to get M and N = 0.130758 seconds per thread haplopair search = 1.2119 seconds per thread initializing missing = 0.00900171 seconds per thread allocating and viewing = 0.0271677 seconds per thread index conversion = 7.6459e-5 seconds per thread Phasing by win-win intersection = 1.11836 seconds Window-by-window intersection = 0.00243005 seconds per thread Breakpoint search = 0.121638 seconds per thread Recording result = 0.000170855 seconds per thread Imputation = 2.44312 seconds Imputing missing = 2.40696e-5 seconds Writing to file = 2.44309 seconds Total time = 5.31578 seconds 5.316017 seconds (3.20 M allocations: 190.833 MiB, 0.46% gc time, 63.85% compilation time) importing reference data... 24%|█████▋ | ETA: 0:00:16 importing reference data... 52%|████████████▌ | ETA: 0:00:09 importing reference data... 81%|███████████████████▍ | ETA: 0:00:04 importing reference data... 100%|████████████████████████| Time: 0:00:18 Test Summary: | Pass Total Time decompress ultra-compressed files | 1 1 28.4s Test Summary: | Pass Total Time 0 allocations in phasing | 2 2 5.0s Test Summary: | Pass Total Time 0 allocation in haplopair | 2 2 13.4s import BGEN: Error During Test at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:316 Got exception outside of a @test startproc must be called before process Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] process(codec::CodecZlib.ZlibDecompressor, input::TranscodingStreams.Memory, output::TranscodingStreams.Memory, error_ref::TranscodingStreams.Error) @ CodecZlib ~/.julia/packages/CodecZlib/BjTS1/src/decompression.jl:199 [3] decompress(io::IOStream, v::Variant, h::BGEN.Header; decompressed::Nothing) @ BGEN ~/.julia/packages/BGEN/dfgRU/src/genotypes.jl:72 [4] first_allele_dosage!(b::Bgen, v::Variant; T::Core.TypeEgal{Float64}, mean_impute::Bool, clear_decompressed::Bool, data::Nothing, decompressed::Nothing, is_decompressed::Bool) @ BGEN ~/.julia/packages/BGEN/dfgRU/src/genotypes.jl:571 [5] convert_gt(t::Core.TypeEgal{Float64}, b::Bgen) @ MendelImpute ~/.julia/packages/MendelImpute/z2M6N/src/read.jl:38 [6] macro expansion @ ./timing.jl:741 [inlined] [7] macro expansion @ ~/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:318 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] top-level scope @ ~/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:318 Test Summary: | Error Total Time import BGEN | 1 1 1.8s RNG of the outermost testset: Xoshiro(0x16edfdaa6f069ee8, 0xb94f71ded9902c75, 0x64a8d13d91c7f741, 0x987af3132958d4d4, 0x65850f00f60cca58) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:316 Testing failed after 366.47s ERROR: LoadError: Package MendelImpute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1552.87s: package tests unexpectedly errored