Package evaluation to test EmissionModels on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-27T22:59:44.739 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.88s ################################################################################ # Installation # Installing EmissionModels... Resolving package versions... Installed Rmath_jll ──────────────── v0.5.2+0 Installed CompositionsBase ───────── v0.1.2 Installed DiffResults ────────────── v1.1.0 Installed CommonSolve ────────────── v0.2.14 Installed MacroTools ─────────────── v0.5.16 Installed FillArrays ─────────────── v1.17.0 Installed DataStructures ─────────── v0.19.6 Installed ForwardDiff ────────────── v1.4.5 Installed Adapt ──────────────────── v4.7.0 Installed HypergeometricFunctions ── v0.3.30 Installed StatsBase ──────────────── v0.34.13 Installed ConstructionBase ───────── v1.6.0 Installed AbstractTrees ──────────── v0.4.5 Installed NearestNeighbors ───────── v0.4.29 Installed AliasTables ────────────── v1.1.3 Installed OrderedCollections ─────── v2.0.1 Installed ArrayInterface ─────────── v7.30.0 Installed DataAPI ────────────────── v1.16.0 Installed ProgressLogging ────────── v0.1.6 Installed Compat ─────────────────── v4.18.1 Installed PositiveFactorizations ─── v0.2.4 Installed Statistics ─────────────── v1.11.1 Installed Optim ──────────────────── v2.2.2 Installed StatsAPI ───────────────── v1.8.0 Installed ArgCheck ───────────────── v2.5.0 Installed CommonSubexpressions ───── v0.3.1 Installed StaticArraysCore ───────── v1.4.4 Installed IrrationalConstants ────── v0.2.6 Installed StaticArrays ───────────── v1.9.19 Installed PrecompileTools ────────── v1.3.4 Installed ChainRulesCore ─────────── v1.26.1 Installed NaNMath ────────────────── v1.1.4 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed QuadGK ─────────────────── v2.11.3 Installed Distances ──────────────── v0.10.12 Installed LogExpFunctions ────────── v0.3.29 Installed DiffRules ──────────────── v1.16.0 Installed Gamma ──────────────────── v1.1.0 Installed Roots ──────────────────── v3.0.7 Installed Distributions ──────────── v0.25.131 Installed FiniteDiff ─────────────── v2.33.0 Installed PtrArrays ──────────────── v1.4.0 Installed EnumX ──────────────────── v1.0.7 Installed NLSolversBase ──────────── v8.0.1 Installed StatsFuns ──────────────── v1.5.2 Installed Rmath ──────────────────── v0.9.0 Installed SpecialFunctions ───────── v2.9.0 Installed HiddenMarkovModels ─────── v0.7.1 Installed Reexport ───────────────── v1.2.2 Installed Missings ───────────────── v1.2.0 Installed JLLWrappers ────────────── v1.8.0 Installed EmissionModels ─────────── v0.1.0 Installed InverseFunctions ───────── v0.1.17 Installed Setfield ───────────────── v1.1.2 Installed SortingAlgorithms ──────── v1.2.3 Installed Preferences ────────────── v1.5.2 Installed ADTypes ────────────────── v1.24.0 Installed PDMats ─────────────────── v0.11.41 Installed LineSearches ───────────── v7.7.1 Installed DensityInterface ───────── v0.4.0 Installed Accessors ──────────────── v0.1.45 Installed DocStringExtensions ────── v0.9.5 Installed DifferentiationInterface ─ v0.7.21 Installing 2 artifacts Installed artifact Rmath 111.3 KiB Installed artifact OpenSpecFun 105.4 KiB Updating `~/.julia/environments/v1.14/Project.toml` [1e2dd27c] + EmissionModels v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.30.0 [d360d2e6] + ChainRulesCore v1.26.1 [38540f10] + CommonSolve v0.2.14 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [b429d917] + DensityInterface v0.4.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.21 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [1e2dd27c] + EmissionModels v0.1.0 [4e289a0a] + EnumX v1.0.7 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.33.0 [f6369f11] + ForwardDiff v1.4.5 ⌃ [a0844989] + Gamma v1.1.0 [84ca31d5] + HiddenMarkovModels v0.7.1 [34004b35] + HypergeometricFunctions v0.3.30 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [d3d80556] + LineSearches v7.7.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v8.0.1 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.29 [429524aa] + Optim v2.2.2 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [33c8b6b6] + ProgressLogging v0.1.6 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.07s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.2 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/sTG3E/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 3.5 s ✓ MacroTools 0.5 s ✓ Reexport 1.0 s ✓ ConstructionBase 2.3 s ✓ IrrationalConstants 0.6 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.8 s ✓ Combinatorics 25.8 s ✓ JuliaSyntax 1.7 s ✓ ArgCheck 0.8 s ✓ LaTeXStrings 0.7 s ✓ Glob 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.6 s ✓ PtrArrays 0.7 s ✓ Adapt 0.8 s ✓ PositiveFactorizations 0.6 s ✓ DataAPI 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 1.0 s ✓ AbstractTrees 0.5 s ✓ EnumX 2.6 s ✓ FillArrays 1.1 s ✓ OrderedCollections 3.2 s ✓ Tokenize 1.0 s ✓ DocStringExtensions 1.0 s ✓ Gamma 1.6 s ✓ Compiler 0.6 s ✓ IteratorInterfaceExtensions 2.1 s ✓ Crayons 0.8 s ✓ ProgressLogging 0.7 s ✓ NaNMath 2.2 s ✓ PDMats 0.8 s ✓ Compat 1.2 s ✓ Preferences 3.0 s ✓ CodeTracking 1.0 s ✓ CommonSubexpressions 0.6 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.5 s ✓ Statistics → SparseArraysExt 1.1 s ✓ Distances 0.6 s ✓ DiffResults 0.7 s ✓ AliasTables 0.8 s ✓ ArrayInterface 1.5 s ✓ Adapt → AdaptSparseArraysExt 0.8 s ✓ Missings 1.6 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.6 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 2.6 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 3.4 s ✓ CSTParser 1.1 s ✓ LogExpFunctions 1.7 s ✓ HypergeometricFunctions 0.5 s ✓ TableTraits 1.9 s ✓ FillArrays → FillArraysPDMatsExt 0.8 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ PrecompileTools 1.2 s ✓ JLLWrappers 9.7 s ✓ JuliaInterpreter 1.5 s ✓ Setfield 1.2 s ✓ Distances → DistancesSparseArraysExt 1.1 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.4 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.1 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1.4 s ✓ DensityInterface 3.6 s ✓ Accessors 0.5 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 2.6 s ✓ Tables 2.0 s ✓ ChainRulesCore 4.0 s ✓ Aqua 2.8 s ✓ DataStructures 4.5 s ✓ StringManipulation 1.2 s ✓ CommonSolve 9.8 s ✓ StaticArrays 1.6 s ✓ ADTypes 10.1 s ✓ CommonMark 1.2 s ✓ Rmath_jll 0.9 s ✓ OpenSpecFun_jll 14.8 s ✓ LoweredCodeUtils 0.8 s ✓ FiniteDiff 1.6 s ✓ Accessors → TestExt 1.8 s ✓ Accessors → LinearAlgebraExt 1.2 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.5 s ✓ Distances → DistancesChainRulesCoreExt 0.4 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2.6 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.6 s ✓ SortingAlgorithms 2.4 s ✓ QuadGK 42.5 s ✓ PrettyTables 1.4 s ✓ StaticArrays → StaticArraysStatisticsExt 1.4 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.4 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.3 s ✓ Adapt → AdaptStaticArraysExt 2.1 s ✓ FillArrays → FillArraysStaticArraysExt 1.6 s ✓ Accessors → StaticArraysExt 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 0.9 s ✓ ADTypes → ADTypesChainRulesCoreExt 2.2 s ✓ DifferentiationInterface 41.5 s ✓ JuliaFormatter 1.4 s ✓ Rmath 5.3 s ✓ SpecialFunctions 7.5 s ✓ Revise 1.6 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 1.6 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 5.6 s ✓ Roots 5.2 s ✓ StatsBase 4.7 s ✓ HCubature 8.3 s ✓ NearestNeighbors 1.1 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1.3 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.8 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3.6 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.0 s ✓ DiffRules 2.9 s ✓ StatsFuns WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `WorldView` not defined in `JET` Suggestion: this global was defined as `Compiler.WorldView` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/wP86V/src/abstractinterpret/typeinfer.jl:239 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [3] top-level scope @ ~/.julia/packages/JET/wP86V/src/JETBase.jl:320 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [5] top-level scope @ ~/.julia/packages/JET/wP86V/src/JET.jl:43 [6] include(mod::Module, _path::String) @ Base Base.jl:334 [7] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/abstractinterpret/typeinfer.jl:239 in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/JETBase.jl:320 in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/JET.jl:1 in expression starting at stdin:5 ✗ JET 1.0 s ✓ Roots → RootsChainRulesCoreExt 4.9 s ✓ FunctionZeros 2.4 s ✓ PDMats → StatsBaseExt 1.6 s ✓ NLSolversBase 7.3 s ✓ ForwardDiff 3.3 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 1.0 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 11.7 s ✓ Distributions 1.5 s ✓ LineSearches 1.8 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 1.4 s ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1.2 s ✓ Roots → RootsForwardDiffExt 5.4 s ✓ HiddenMarkovModels 4.7 s ✓ Distributions → DistributionsTestExt 4.5 s ✓ Distributions → DistributionsDensityInterfaceExt 4.9 s ✓ Distributions → DistributionsChainRulesCoreExt 9.0 s ✓ SequentialSamplingModels 6.0 s ✓ Optim 4.1 s ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 7.2 s ✓ EmissionModels 8.3 s ✓ EmissionModels → EmissionModelsSequentialSamplingModelsExt 135 dependencies successfully precompiled in 448 seconds. 38 already precompiled. 1 dependency had output during precompilation: ┌ JET │ WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. │ WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. │ ERROR: LoadError: UndefVarError: `WorldView` not defined in `JET` │ Suggestion: this global was defined as `Compiler.WorldView` but not assigned a value. │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/JET/wP86V/src/abstractinterpret/typeinfer.jl:239 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [3] top-level scope │ @ ~/.julia/packages/JET/wP86V/src/JETBase.jl:320 │ [4] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [5] top-level scope │ @ ~/.julia/packages/JET/wP86V/src/JET.jl:43 │ [6] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [7] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/abstractinterpret/typeinfer.jl:239 │ in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/JETBase.jl:320 │ in expression starting at /home/pkgeval/.julia/packages/JET/wP86V/src/JET.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 1 package failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.14/JET/jl_dD8XNP" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 466.68s ################################################################################ # Testing # Testing EmissionModels Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_wJlxxB/Project.toml` [4c88cf16] + Aqua v0.8.16 ⌃ [31c24e10] ↓ Distributions v0.25.131 ⇒ v0.25.127 ⌅ [c3a54625] + JET v0.11.6 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [0e71a2a6] + SequentialSamplingModels v0.13.3 [44cfe95a] ~ Pkg ⇒ v1.14.0 Updating `/tmp/jl_wJlxxB/Manifest.toml` [4c88cf16] + Aqua v0.8.16 [00ebfdb7] + CSTParser v3.5.0 [da1fd8a2] + CodeTracking v3.0.2 [861a8166] + Combinatorics v1.1.0 ⌅ [a80b9123] + CommonMark v0.8.16 [807dbc54] + Compiler v0.1.1 [a8cc5b0e] + Crayons v4.2.0 ⌅ [864edb3b] ↓ DataStructures v0.19.6 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [31c24e10] ↓ Distributions v0.25.131 ⇒ v0.25.127 [b21f74c0] + FunctionZeros v1.1.0 [c27321d9] + Glob v1.5.0 [19dc6840] + HCubature v1.8.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] + JET v0.11.6 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [aa1ae85d] + JuliaInterpreter v0.11.4 [70703baa] + JuliaSyntax v1.0.2 [b964fa9f] + LaTeXStrings v1.4.1 [6f1432cf] + LoweredCodeUtils v3.8.0 ⌅ [bac558e1] ↓ OrderedCollections v2.0.1 ⇒ v1.8.2 [08abe8d2] + PrettyTables v3.4.8 [295af30f] + Revise v3.16.5 ⌅ [f2b01f46] ↓ Roots v3.0.7 ⇒ v2.3.0 [0e71a2a6] + SequentialSamplingModels v0.13.3 [892a3eda] + StringManipulation v0.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [0796e94c] + Tokenize v0.5.29 [0dad84c5] + ArgTools v1.2.0 [8bf52ea8] + CRC32c v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.14.0 [3fa0cd96] + REPL v1.11.0 [6462fe0b] + Sockets v1.11.0 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_wJlxxB/Project.toml` [4c88cf16] Aqua v0.8.16 [b429d917] DensityInterface v0.4.0 ⌃ [31c24e10] Distributions v0.25.127 [1e2dd27c] EmissionModels v0.1.0 [f6369f11] ForwardDiff v1.4.5 [84ca31d5] HiddenMarkovModels v0.7.1 ⌅ [c3a54625] JET v0.11.6 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [0e71a2a6] SequentialSamplingModels v0.13.3 [276daf66] SpecialFunctions v2.9.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [37e2e46d] LinearAlgebra v1.14.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_wJlxxB/Manifest.toml` [47edcb42] ADTypes v1.24.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.30.0 [00ebfdb7] CSTParser v3.5.0 [d360d2e6] ChainRulesCore v1.26.1 [da1fd8a2] CodeTracking v3.0.2 [861a8166] Combinatorics v1.1.0 ⌅ [a80b9123] CommonMark v0.8.16 [38540f10] CommonSolve v0.2.14 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.21 [b4f34e82] Distances v0.10.12 ⌃ [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [1e2dd27c] EmissionModels v0.1.0 [4e289a0a] EnumX v1.0.7 [1a297f60] FillArrays v1.17.0 [6a86dc24] FiniteDiff v2.33.0 [f6369f11] ForwardDiff v1.4.5 [b21f74c0] FunctionZeros v1.1.0 ⌃ [a0844989] Gamma v1.1.0 [c27321d9] Glob v1.5.0 [19dc6840] HCubature v1.8.0 [84ca31d5] HiddenMarkovModels v0.7.1 [34004b35] HypergeometricFunctions v0.3.30 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.11.6 [692b3bcd] JLLWrappers v1.8.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [aa1ae85d] JuliaInterpreter v0.11.4 [70703baa] JuliaSyntax v1.0.2 [b964fa9f] LaTeXStrings v1.4.1 [d3d80556] LineSearches v7.7.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.8.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v8.0.1 [77ba4419] NaNMath v1.1.4 [b8a86587] NearestNeighbors v0.4.29 [429524aa] Optim v2.2.2 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.41 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [33c8b6b6] ProgressLogging v0.1.6 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [295af30f] Revise v3.16.5 [79098fc4] Rmath v0.9.0 ⌅ [f2b01f46] Roots v2.3.0 [0e71a2a6] SequentialSamplingModels v0.13.3 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [90137ffa] StaticArrays v1.9.19 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 ⌅ [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.5.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [0796e94c] Tokenize v0.5.29 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Resolving package versions... Updating `/tmp/jl_wJlxxB/Project.toml` [8fd7b0b5] + EmissionModelsTest v0.1.0 `~/.julia/packages/EmissionModels/IuoIy/libs/EmissionModelsTest` Updating `/tmp/jl_wJlxxB/Manifest.toml` [8fd7b0b5] + EmissionModelsTest v0.1.0 `~/.julia/packages/EmissionModels/IuoIy/libs/EmissionModelsTest` Random sampling: Error During Test at /home/pkgeval/.julia/packages/EmissionModels/IuoIy/test/multivariate/test_t.jl:298 Got exception outside of a @test MethodError: no method matching reducedim1(::Matrix{Float64}, ::Adjoint{Float64, Matrix{Float64}}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Adjoint{Float64, Matrix{Float64}}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Adjoint{Float64, Matrix{Float64}}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Adjoint{Float64, Matrix{Float64}}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Adjoint{Float64, Matrix{Float64}}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Adjoint{Float64, Matrix{Float64}}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Adjoint{Float64, Matrix{Float64}}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] top-level scope @ ~/.julia/packages/EmissionModels/IuoIy/test/multivariate/test_t.jl:242 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [9] macro expansion @ ~/.julia/packages/EmissionModels/IuoIy/test/multivariate/test_t.jl:299 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [11] macro expansion @ ~/.julia/packages/EmissionModels/IuoIy/test/multivariate/test_t.jl:317 [inlined] ┌ Warning: Too few samples (3) for k-NN KL estimation (k=5) └ @ EmissionModels ~/.julia/packages/EmissionModels/IuoIy/src/acdc/interface.jl:288 Unbound type parameters detected: [1] rand_calcium(rng::AbstractRNG, init::AbstractVector, trans::AbstractMatrix, dists::AbstractVector{<:CalciumEmission{T}}, n_t::Integer) where T<:Real @ EmissionModels ~/.julia/packages/EmissionModels/IuoIy/src/calcium/calcium.jl:953 [2] var"#init_calcium#64"(α, c, R::Integer, tied::Bool, fit_c::Bool, fit_b::Bool, gaussian::Bool, rng::AbstractRNG, spread::Real, seq_ends, ::typeof(init_calcium), obs_seq::AbstractVector{<:AbstractVector{S}}, nstates::Integer, order::Integer) where S<:Real @ EmissionModels ~/.julia/packages/EmissionModels/IuoIy/src/calcium/calcium.jl:781 Unbound type parameters: Test Failed at /home/pkgeval/.julia/packages/Aqua/h1qD0/src/unbound_args.jl:38 Expression: isempty(unbounds) Evaluated: isempty(Method[rand_calcium(rng::AbstractRNG, init::AbstractVector, trans::AbstractMatrix, dists::AbstractVector{<:CalciumEmission{T}}, n_t::Integer) where T<:Real @ EmissionModels ~/.julia/packages/EmissionModels/IuoIy/src/calcium/calcium.jl:953, var"#init_calcium#64"(α, c, R::Integer, tied::Bool, fit_c::Bool, fit_b::Bool, gaussian::Bool, rng::AbstractRNG, spread::Real, seq_ends, ::typeof(init_calcium), obs_seq::AbstractVector{<:AbstractVector{S}}, nstates::Integer, order::Integer) where S<:Real @ EmissionModels ~/.julia/packages/EmissionModels/IuoIy/src/calcium/calcium.jl:781]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [2] test_unbound_args(m::Module; broken::Bool) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/unbound_args.jl:38 [3] test_unbound_args(m::Module) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/unbound_args.jl:14 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:78 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [6] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:78 Test Summary: | Pass Fail Error Total Time EmissionModels.jl | 1129 1 1 1131 10m46.2s Code Formatting | 1 1 54.5s Code linting | 0 0.0s GLM Models | 463 463 2m15.4s Zero-inflated models | 68 68 32.0s Multivariate models | 152 1 153 51.9s MvT | 64 64 18.2s MvTDiag | 63 1 64 23.5s Constructor | 12 12 0.1s DensityInterface | 9 9 0.1s Random sampling | 2 1 3 12.0s fit! with uniform weights | 3 3 1.0s fit! with weighted observations | 3 3 0.2s fit! with fix_nu option | 2 2 0.1s fit! edge cases | 8 8 0.0s Integration test | 5 5 0.4s HMM Integration | 19 19 9.6s Constructor does not alias caller arrays | 5 5 0.0s Array sampling API | 5 5 0.2s Float32 type stability | 2 2 0.8s ν M-step stays finite on near-Gaussian data | 4 4 0.1s rand! in-place sampling | 6 6 3.0s fit! works for non-BLAS eltypes (BigFloat) | 3 3 5.1s DDM emissions (SequentialSamplingModels extension) | 118 118 56.1s Calcium imaging emissions | 113 113 42.6s ACDC model selection | 128 128 1m15.0s Examples | 35 35 33.2s Allocations | 41 41 20.1s Code quality (Aqua.jl) | 10 1 11 2m25.4s Method ambiguity | 1 1 12.1s Unbound type parameters | 1 1 17.9s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.5s Stale dependencies | 1 1 9.3s Compat bounds | 4 4 0.8s Piracy | 1 1 0.6s Persistent tasks | 1 1 1m25.8s RNG of the outermost testset: Xoshiro(0xb968386456a73379, 0x833beddfcd773b82, 0x2906a034af0f3d23, 0x211882208284831c, 0xf7e8b1eebbf8ad72) ERROR: LoadError: Some tests did not pass: 1129 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EmissionModels/IuoIy/test/runtests.jl:13 Testing failed after 694.62s ERROR: LoadError: Package EmissionModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1267.36s: package fails to precompile