Package evaluation to test BigRiverEssence on Julia 1.14.0-DEV.3055 (7e75a8061a*) started at 2026-08-27T12:37:04.255 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 11.8s ################################################################################ # Installation # Installing BigRiverEssence... Resolving package versions... Installed Statistics ────── v1.11.1 Installed BigRiverEssence ─ v0.1.0 Updating `~/.julia/environments/v1.14/Project.toml` [2768b56d] + BigRiverEssence v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [2768b56d] + BigRiverEssence v0.1.0 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.45s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3.6 s ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 2.7 s ✓ MacroTools 0.4 s ✓ Reexport 0.7 s ✓ Statistics 0.5 s ✓ DataAPI 0.6 s ✓ ConstructionBase 1.7 s ✓ IrrationalConstants 0.5 s ✓ StatsAPI 0.8 s ✓ OrderedCollections 0.5 s ✓ InverseFunctions 0.7 s ✓ CompositionsBase 0.8 s ✓ DocStringExtensions 1.6 s ✓ FillArrays 0.5 s ✓ PtrArrays 1.6 s ✓ PDMats 0.6 s ✓ DelimitedFiles 0.7 s ✓ Compat 1.2 s ✓ Preferences 0.9 s ✓ BigRiverEssence 1.2 s ✓ Statistics → SparseArraysExt 0.5 s ✓ Missings 0.4 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 2.6 s ✓ DataStructures 1.5 s ✓ InverseFunctions → InverseFunctionsTestExt 0.9 s ✓ InverseFunctions → InverseFunctionsDatesExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 0.8 s ✓ LogExpFunctions 1.4 s ✓ FillArrays → FillArraysSparseArraysExt 0.7 s ✓ FillArrays → FillArraysStatisticsExt 0.7 s ✓ AliasTables 1.5 s ✓ FillArrays → FillArraysPDMatsExt 0.4 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ JLLWrappers 0.9 s ✓ PrecompileTools 0.6 s ✓ SortingAlgorithms 1.4 s ✓ QuadGK 3.4 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.2 s ✓ Gamma 5.0 s ✓ Aqua 1.6 s ✓ Rmath_jll 1.1 s ✓ OpenSpecFun_jll 1.0 s ✓ Arpack_jll 1.3 s ✓ CommonSolve 3.7 s ✓ StatsBase 1.9 s ✓ Accessors → LinearAlgebraExt 1.4 s ✓ Accessors → TestExt 1.5 s ✓ HypergeometricFunctions 1.2 s ✓ Rmath 4.6 s ✓ SpecialFunctions 1.2 s ✓ Arpack 1.4 s ✓ PDMats → StatsBaseExt 4.1 s ✓ Roots 2.2 s ✓ StatsFuns 0.8 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 7.9 s ✓ Distributions 3.3 s ✓ Distributions → DistributionsTestExt 3.2 s ✓ MultivariateStats 57 dependencies successfully precompiled in 88 seconds. 35 already precompiled. Precompilation completed after 109.35s ################################################################################ # Testing # Testing BigRiverEssence Status `/tmp/jl_1pUt8F/Project.toml` [4c88cf16] Aqua v0.8.16 [2768b56d] BigRiverEssence v0.1.0 [8bb1440f] DelimitedFiles v1.9.1 [6f286f6a] MultivariateStats v0.10.5 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1pUt8F/Manifest.toml` [7d9f7c33] Accessors v0.1.45 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [7d9fca2a] Arpack v0.5.4 [2768b56d] BigRiverEssence v0.1.0 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.17.0 [a0844989] Gamma v1.2.0 [34004b35] HypergeometricFunctions v0.3.30 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.5 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.41 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.7 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... pca :svd wide-data branch with standardize: Error During Test at /home/pkgeval/.julia/packages/BigRiverEssence/bYof8/test/pca_test.jl:161 Got exception outside of a @test MethodError: no method matching reducedim1(::Matrix{Float64}, ::Matrix{Float64}) The function `reducedim1` exists, but no method is defined for this combination of argument types. Closest candidates are: reducedim1(::Any) @ Base reducedim.jl:1229 Stacktrace: [1] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:282 [2] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [3] _varm(A::Matrix{Float64}, m::Matrix{Float64}, corrected::Bool, region::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [4] varm(A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [5] _var(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [6] var(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [7] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [8] std(A::Matrix{Float64}; corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [9] pca(X::Matrix{Float64}; k::Int64, standardize::Bool, method::Symbol) @ BigRiverEssence ~/.julia/packages/BigRiverEssence/bYof8/src/pca.jl:96 [10] top-level scope @ ~/.julia/packages/BigRiverEssence/bYof8/test/pca_test.jl:162 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [12] macro expansion @ ~/.julia/packages/BigRiverEssence/bYof8/test/pca_test.jl:168 [inlined] [ Info: PMD fixtures generated against PMA 1.2.4 [ Info: SPC fixtures generated against PMA 1.2.4 Estimating ranks via permutation test... Estimated joint rank: 2, individual ranks: [3, 3] [ Info: JIVE fixtures generated against r.jive 2.4 Estimating ranks via permutation test... Estimated joint rank: 2, individual ranks: [3, 3] Julia : joint=2 indiv=[3, 3] r.jive: joint=2 indiv=[3, 3] match : true [ Info: PLS-DA fixtures generated against mixOmics 6.36.0 [ Info: sPLS-DA fixtures generated against mixOmics 6.36.0 [ Info: sCCA fixtures generated against PMA 1.2.4 Test Summary: | Pass Error Total Time BigRiverEssence.jl | 722 1 723 2m55.4s Aqua | 11 11 42.4s Utility | 23 23 20.8s Principal Component Analysis (pca) | 55 1 56 21.7s output structure & invariants | 17 17 5.4s loadings are orthonormal | 2 2 1.1s ground-truth: recovers a planted direction | 4 4 1.5s ground-truth: variances equal the data spectrum | 2 2 0.8s :svd and :cov agree | 3 3 0.3s proportions sum correctly | 1 1 0.0s sign consistency | 8 8 0.0s pca :svd wide-data branch (p > n) | 9 9 1.3s pca :svd wide-data branch with standardize | 1 1 7.7s transform / inverse round-trip | 3 3 0.8s standardize round-trip | 1 1 0.4s determinism | 2 2 0.0s argument validation | 3 3 0.6s Penalized Matrix Decomposition (pmd) | 118 118 11.5s Sparse Principal Component Analysis (spc) | 190 190 14.7s Kernel Partial Least Squares (plskern) | 56 56 8.9s Joint and Individual Variation Explained (jive) | 47 47 25.2s Partial Least Squares Discriminant Analysis (plsda) | 32 32 3.7s Sparse Partial Least Squares Discriminant Analysis (splsda) | 61 61 4.5s Canonical Correlation Analysis (cca) | 53 53 11.4s Sparse Canonical Correlation Analysis (scca) | 76 76 10.5s RNG of the outermost testset: Xoshiro(0x8e82c313e8b6934c, 0x610dfbd5c1580df8, 0x89b0d46d9b02743f, 0x57a74d014332a58a, 0xc7b3f7c20a2d8935) ERROR: LoadError: Some tests did not pass: 722 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BigRiverEssence/bYof8/test/runtests.jl:24 Testing failed after 191.59s ERROR: LoadError: Package BigRiverEssence errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 349.14s: package tests unexpectedly errored