Package evaluation to test SparseKmeansFeatureRanking on Julia 1.14.0-DEV.2802 (918269a29b*) started at 2026-07-29T12:25:16.512 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.08s ################################################################################ # Installation # Installing SparseKmeansFeatureRanking... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.1.1 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Glob ───────────────────────────── v1.5.0 Installed ManualMemory ───────────────────── v0.1.8 Installed CodecZstd ──────────────────────── v0.8.7 Installed FilePathsBase ──────────────────── v0.9.24 Installed SparseKmeansFeatureRanking ─────── v0.1.2 Installed DataStructures ─────────────────── v0.19.6 Installed Adapt ──────────────────────────── v4.7.0 Installed SLEEFPirates ───────────────────── v0.6.46 Installed VectorizationBase ──────────────── v0.21.74 Installed InlineStrings ──────────────────── v1.4.5 Installed StatsBase ──────────────────────── v0.34.12 Installed DelimitedFiles ─────────────────── v1.9.1 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed ArrayInterface ─────────────────── v7.28.1 Installed OrderedCollections ─────────────── v2.0.1 Installed LoopVectorization ──────────────── v0.12.174 Installed SIMDTypes ──────────────────────── v0.1.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed CSV ────────────────────────────── v0.10.16 Installed TranscodingStreams ─────────────── v0.9.13 Installed HostCPUFeatures ────────────────── v0.1.18 Installed DataAPI ────────────────────────── v1.16.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Compat ─────────────────────────── v4.18.1 Installed Statistics ─────────────────────── v1.11.1 Installed InvertedIndices ────────────────── v1.3.1 Installed DataValueInterfaces ────────────── v1.0.0 Installed CpuId ──────────────────────────── v0.3.1 Installed StatsAPI ───────────────────────── v1.8.0 Installed SentinelArrays ─────────────────── v1.4.10 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.4 Installed StringManipulation ─────────────── v0.4.6 Installed NaNMath ────────────────────────── v1.1.4 Installed SciMLPublic ────────────────────── v1.2.4 Installed IrrationalConstants ────────────── v0.2.6 Installed LayoutPointers ─────────────────── v0.1.17 Installed Distances ──────────────────────── v0.10.12 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed StaticArrayInterface ───────────── v1.10.0 Installed CPUSummary ─────────────────────── v0.2.7 Installed Tullio ─────────────────────────── v0.3.9 Installed DiffRules ──────────────────────── v1.16.0 Installed LogExpFunctions ────────────────── v1.0.1 Installed Parsers ────────────────────────── v2.8.6 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed BioGenerics ────────────────────── v0.1.5 Installed BufferedStreams ────────────────── v1.2.2 Installed Requires ───────────────────────── v1.3.1 Installed IfElse ─────────────────────────── v0.1.1 Installed Tables ─────────────────────────── v1.13.0 Installed PrettyTables ───────────────────── v3.4.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed SpecialFunctions ───────────────── v2.8.0 Installed Static ─────────────────────────── v1.4.4 Installed PtrArrays ──────────────────────── v1.4.0 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.5.2 Installed WeakRefStrings ─────────────────── v1.4.3 Installed PooledArrays ───────────────────── v1.4.3 Installed DataFrames ─────────────────────── v1.8.2 Installed SnpArrays ──────────────────────── v0.3.23 Installed JLLWrappers ────────────────────── v1.8.0 Installed TableTraits ────────────────────── v1.0.1 Installed SortingAlgorithms ──────────────── v1.2.3 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.2.0 Installed XZ_jll ─────────────────────────── v5.8.3+0 Installed Automa ─────────────────────────── v1.2.0 Installed VariantCallFormat ──────────────── v0.5.9 Installed ThreadingUtilities ─────────────── v0.5.6 Installed BGZFStreams ────────────────────── v0.3.2 Installed CodecXz ────────────────────────── v0.7.4 Installed UnPack ─────────────────────────── v1.0.2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed WorkerUtilities ────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.5 Installing 4 artifacts Installed artifact OpenSpecFun 105.4 KiB Installed artifact Bzip2 152.8 KiB Installed artifact XZ 1018.2 KiB Installed artifact testfiles 4.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a6138be3] + SparseKmeansFeatureRanking v0.1.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.28.1 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [f70d9fcc] + CommonWorldInvalidations v1.1.1 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b552c78f] + DiffRules v1.16.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [48062228] + FilePathsBase v0.9.24 [c27321d9] + Glob v1.5.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v2.0.1 [69de0a69] + Parsers v2.8.6 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.2 [43287f4e] + PtrArrays v1.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.2.4 [91c51154] + SentinelArrays v1.4.10 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.3 [a6138be3] + SparseKmeansFeatureRanking v0.1.2 [276daf66] + SpecialFunctions v2.8.0 [aedffcd0] + Static v1.4.4 [0d7ed370] + StaticArrayInterface v1.10.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [892a3eda] + StringManipulation v0.4.6 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [8290d209] + ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [bc48ee85] + Tullio v0.3.9 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.8.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 0.8 s ✓ Glob 2.0 s ✓ Crayons 1.6 s ✓ InlineStrings 0.6 s ✓ ManualMemory 0.5 s ✓ Reexport 0.6 s ✓ Adapt 0.8 s ✓ Statistics 0.6 s ✓ DataAPI 0.5 s ✓ SciMLPublic 2.0 s ✓ IrrationalConstants 0.5 s ✓ UnPack 0.6 s ✓ CommonWorldInvalidations 0.5 s ✓ DataValueInterfaces 0.5 s ✓ StatsAPI 0.9 s ✓ OrderedCollections 0.5 s ✓ InvertedIndices 0.8 s ✓ DocStringExtensions 0.7 s ✓ WorkerUtilities 1.2 s ✓ OffsetArrays 0.7 s ✓ BufferedStreams 0.5 s ✓ IfElse 0.5 s ✓ PtrArrays 0.5 s ✓ SIMDTypes 0.4 s ✓ IteratorInterfaceExtensions 0.6 s ✓ LaTeXStrings 0.8 s ✓ Requires 0.7 s ✓ NaNMath 0.7 s ✓ DelimitedFiles 1.5 s ✓ CpuId 1.7 s ✓ SentinelArrays 1.7 s ✓ StructUtils 0.8 s ✓ Compat 1.4 s ✓ Preferences 1.9 s ✓ TranscodingStreams 1.2 s ✓ ThreadingUtilities 0.7 s ✓ ArrayInterface 1.5 s ✓ Adapt → AdaptSparseArraysExt 1.3 s ✓ Statistics → SparseArraysExt 0.6 s ✓ Missings 0.7 s ✓ PooledArrays 1.0 s ✓ Distances 3.2 s ✓ DataStructures 1.1 s ✓ LogExpFunctions 0.5 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.6 s ✓ AliasTables 0.4 s ✓ TableTraits 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.8 s ✓ JLLWrappers 1.1 s ✓ PrecompileTools 1.4 s ✓ BioGenerics 2.0 s ✓ CodecZstd 1.4 s ✓ CodecZlib 1.5 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1.4 s ✓ Distances → DistancesSparseArraysExt 0.8 s ✓ SortingAlgorithms 1.5 s ✓ Tables 1.8 s ✓ FilePathsBase 1.6 s ✓ Bzip2_jll 1.1 s ✓ XZ_jll 1.0 s ✓ OpenSpecFun_jll 18.4 s ✓ Automa 6.4 s ✓ StringManipulation 9.8 s ✓ Parsers 1.9 s ✓ Static 1.4 s ✓ BGZFStreams 4.8 s ✓ StatsBase 1.1 s ✓ StructUtils → StructUtilsTablesExt 3.0 s ✓ FilePathsBase → FilePathsBaseTestExt 0.8 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.9 s ✓ CodecBzip2 1.7 s ✓ CodecXz 8.0 s ✓ SpecialFunctions 49.5 s ✓ PrettyTables 7.4 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 0.9 s ✓ BitTwiddlingConvenienceFunctions 2.9 s ✓ CPUSummary 3.1 s ✓ StaticArrayInterface [ Info: Compiling VCF parser... 17.5 s ✓ VariantCallFormat 1.1 s ✓ DiffRules 88.8 s ✓ DataFrames 10.7 s ✓ BenchmarkTools 2.2 s ✓ WeakRefStrings 2.4 s ✓ HostCPUFeatures 1.9 s ✓ PolyesterWeave 0.9 s ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 0.9 s ✓ CloseOpenIntervals 1.2 s ✓ LayoutPointers 5.0 s ✓ Tullio 25.1 s ✓ CSV 17.1 s ✓ VectorizationBase 3.1 s ✓ SLEEFPirates 40.8 s ✓ LoopVectorization 3.0 s ✓ LoopVectorization → SpecialFunctionsExt julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [664] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x7759364afebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x77593644b394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x77593644c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6211689 (Pool: 6211449; Big: 240); GC: 11 ✗ SnpArrays ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 in expression starting at stdin:5 ✗ SparseKmeansFeatureRanking 94 dependencies successfully precompiled in 441 seconds. 22 already precompiled. 3 dependencies had output during precompilation: ┌ SnpArrays │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [664] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x7759364afebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x77593644b394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x77593644c249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6211689 (Pool: 6211449; Big: 240); GC: 11 └ ┌ SparseKmeansFeatureRanking │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 │ in expression starting at stdin:5 └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ERROR: LoadError: The following 2 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_Zp2mJP" (ProcessSignaled(6)). SparseKmeansFeatureRanking Failed to precompile SparseKmeansFeatureRanking [a6138be3-5d3e-4f3e-9009-7e37efc59f36] to "/home/pkgeval/.julia/compiled/v1.14/SparseKmeansFeatureRanking/jl_PmLxtG" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 466.6s ################################################################################ # Testing # Testing SparseKmeansFeatureRanking Status `/tmp/jl_ZTrraw/Project.toml` [6e4b80f9] BenchmarkTools v1.8.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [e1d29d7a] Missings v1.2.0 [4e780e97] SnpArrays v0.3.23 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ZTrraw/Manifest.toml` [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.28.1 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [6e4b80f9] BenchmarkTools v1.8.0 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [f70d9fcc] CommonWorldInvalidations v1.1.1 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b552c78f] DiffRules v1.16.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [c27321d9] Glob v1.5.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v2.0.1 [69de0a69] Parsers v2.8.6 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.2 [43287f4e] PtrArrays v1.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [431bcebd] SciMLPublic v1.2.4 [91c51154] SentinelArrays v1.4.10 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.3 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.4 [0d7ed370] StaticArrayInterface v1.10.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [892a3eda] StringManipulation v0.4.6 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [8290d209] ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [bc48ee85] Tullio v0.3.9 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.8.3+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [678] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x7c3eb1c8eebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7c3eb1c2a394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x7c3eb1c2b249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6211380 (Pool: 6211140; Big: 240); GC: 11 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ SnpArrays │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [678] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x7c3eb1c8eebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x7c3eb1c2a394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x7c3eb1c2b249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6211380 (Pool: 6211140; Big: 240); GC: 11 └ ┌ SparseKmeansFeatureRanking │ [Output was shown above] └ ERROR: LoadError: The following 2 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_n8Nwbg" (ProcessSignaled(6)). SparseKmeansFeatureRanking Failed to precompile SparseKmeansFeatureRanking [a6138be3-5d3e-4f3e-9009-7e37efc59f36] to "/home/pkgeval/.julia/compiled/v1.14/SparseKmeansFeatureRanking/jl_NaGxAp" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/test/runtests.jl:1 Testing failed after 46.45s ERROR: LoadError: Package SparseKmeansFeatureRanking errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 593.93s: package fails to precompile