Package evaluation to test PhyloClustering on Julia 1.14.0-DEV.2802 (918269a29b*) started at 2026-07-29T18:53:46.933 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.09s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed libaom_jll ────────────────── v3.13.3+0 Installed Libuuid_jll ───────────────── v2.42.0+0 Installed Formatting ────────────────── v0.4.3 Installed MosaicViews ───────────────── v0.3.4 Installed libass_jll ────────────────── v0.17.4+0 Installed ImageIO ───────────────────── v0.6.9 Installed MultivariateStats ─────────── v0.10.4 Installed PolygonOps ────────────────── v0.1.2 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Extents ───────────────────── v0.1.6 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed InlineStrings ─────────────── v1.4.5 Installed Libtiff_jll ───────────────── v4.7.3+0 Installed Graphite2_jll ─────────────── v1.3.16+0 Installed OrderedCollections ────────── v1.8.2 Installed NearestNeighbors ──────────── v0.4.29 Installed Cairo_jll ─────────────────── v1.18.7+0 Installed Optim ─────────────────────── v2.2.1 Installed Functors ──────────────────── v0.4.12 Installed UnsafeArrays ──────────────── v1.0.9 Installed SentinelArrays ────────────── v1.4.10 Installed FileIO ────────────────────── v1.20.0 Installed NaNMath ───────────────────── v1.1.4 Installed Xorg_libpciaccess_jll ─────── v0.19.0+0 Installed AbstractLattices ──────────── v0.3.1 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed QuadGK ────────────────────── v2.11.3 Installed Graphics ──────────────────── v1.1.3 Installed CoreMath_jll ──────────────── v0.1.0+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed libva_jll ─────────────────── v2.23.0+0 Installed Opus_jll ──────────────────── v1.6.1+0 Installed SimplePolynomials ─────────── v0.2.18 Installed Tables ────────────────────── v1.13.0 Installed WoodburyMatrices ──────────── v1.1.0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed EnumX ─────────────────────── v1.0.7 Installed NLSolversBase ─────────────── v8.0.0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Arpack ────────────────────── v0.5.4 Installed InverseFunctions ──────────── v0.1.17 Installed Reexport ──────────────────── v1.2.2 Installed LLVMOpenMP_jll ────────────── v22.1.7+0 Installed SortingAlgorithms ─────────── v1.2.3 Installed Preferences ───────────────── v1.5.2 Installed Crayons ───────────────────── v4.2.0 Installed LERC_jll ──────────────────── v4.1.0+0 Installed TableTraits ───────────────── v1.0.1 Installed Imath_jll ─────────────────── v3.2.2+0 Installed Missings ──────────────────── v1.2.0 Installed Polynomials ───────────────── v4.0.21 Installed LaTeXStrings ──────────────── v1.4.0 Installed libdrm_jll ────────────────── v2.4.134+0 Installed MappedArrays ──────────────── v0.4.3 Installed ADTypes ───────────────────── v1.22.3 Installed RangeArrays ───────────────── v0.3.2 Installed Grisu ─────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed ParallelKMeans ────────────── v1.1.0 Installed FillArrays ────────────────── v1.17.0 Installed MathTeXEngine ─────────────── v0.5.7 Installed OpenEXR_jll ───────────────── v3.4.13+0 Installed MakieCore ─────────────────── v0.7.3 Installed MacroTools ────────────────── v0.5.16 Installed AbstractTrees ─────────────── v0.4.5 Installed ColorBrewer ───────────────── v0.4.2 Installed CodecZstd ─────────────────── v0.8.7 Installed Packing ───────────────────── v0.5.1 Installed DataStructures ────────────── v0.18.22 Installed LazyModules ───────────────── v0.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed Cairo ─────────────────────── v1.1.1 Installed oneTBB_jll ────────────────── v2022.3.0+0 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed Observables ───────────────── v0.5.5 Installed CodecZlib ─────────────────── v0.7.8 Installed ArrayInterface ────────────── v7.28.1 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed CairoMakie ────────────────── v0.11.9 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed CEnum ─────────────────────── v0.5.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Pixman_jll ────────────────── v0.46.4+0 Installed Expat_jll ─────────────────── v2.8.2+0 Installed StructUtils ───────────────── v2.8.2 Installed Clustering ────────────────── v0.15.8 Installed IntegerMathUtils ──────────── v0.1.4 Installed IrrationalConstants ───────── v0.2.6 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.6 Installed Interpolations ────────────── v0.16.3 Installed libpng_jll ────────────────── v1.6.58+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed RoundingEmulator ──────────── v0.2.1 Installed ColorVectorSpace ──────────── v0.10.0 Installed Roots ─────────────────────── v3.0.6 Installed ImageMetadata ─────────────── v0.9.10 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed StableRNGs ────────────────── v1.0.4 Installed FFMPEG_jll ────────────────── v8.1.2+0 Installed PikaParser ────────────────── v0.6.1 Installed Scratch ───────────────────── v1.3.0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FASTX ─────────────────────── v2.1.7 Installed Setfield ──────────────────── v1.1.2 Installed ShaderAbstractions ────────── v0.4.1 Installed PooledArrays ──────────────── v1.4.3 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed ColorSchemes ──────────────── v3.31.0 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed PDMats ────────────────────── v0.11.35 Installed ImageCore ─────────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed WorkerUtilities ───────────── v1.6.1 Installed BioSequences ──────────────── v3.5.1 Installed PNGFiles ──────────────────── v0.4.5 Installed DocStringExtensions ───────── v0.9.5 Installed JpegTurbo ─────────────────── v0.1.6 Installed CommonSolve ───────────────── v0.2.12 Installed CompositionsBase ──────────── v0.1.2 Installed StableHashTraits ──────────── v1.3.4 Installed DifferentiationInterface ──── v0.7.20 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.34+0 Installed Multisets ─────────────────── v0.4.6 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed PkgVersion ────────────────── v0.3.3 Installed LightXML ──────────────────── v0.9.3 Installed RelocatableFolders ────────── v1.0.1 Installed FreeType ──────────────────── v4.1.1 Installed StackViews ────────────────── v0.1.2 Installed KernelDensity ─────────────── v0.6.12 Installed StatsModels ───────────────── v0.7.10 Installed StringViews ───────────────── v1.3.7 Installed Combinatorics ─────────────── v1.1.0 Installed AliasTables ───────────────── v1.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed CSV ───────────────────────── v0.10.16 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Netpbm ────────────────────── v1.1.1 Installed GaussianMixtures ──────────── v0.3.14 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.12.11 Installed StaticArrays ──────────────── v1.9.18 Installed Makie ─────────────────────── v0.20.8 Installed ImageAxes ─────────────────── v0.6.12 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed StaticArraysCore ──────────── v1.4.4 Installed AbstractFFTs ──────────────── v1.5.0 Installed QOI ───────────────────────── v1.0.2 Installed Mods ──────────────────────── v2.2.6 Installed AxisAlgorithms ────────────── v1.1.0 Installed ColorTypes ────────────────── v0.11.5 Installed StringManipulation ────────── v0.4.6 Installed BaseDirs ──────────────────── v1.4.0 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.3+0 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v1.6.1 Installed SimplePartitions ──────────── v0.3.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed Gamma ─────────────────────── v1.1.0 Installed Parsers ───────────────────── v2.8.6 Installed FiniteDiff ────────────────── v2.32.0 Installed Distributions ─────────────── v0.25.130 Installed PrettyTables ──────────────── v3.4.2 Installed FilePaths ─────────────────── v0.8.3 Installed Arpack_jll ────────────────── v3.5.2+0 Installed PhyloNetworks ─────────────── v0.16.4 Installed GridLayoutBase ────────────── v0.10.2 Installed GeoFormatTypes ────────────── v0.4.5 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed PhyloClustering ───────────── v0.2.0 Installed StatsFuns ─────────────────── v1.5.2 Installed OpenEXR ───────────────────── v0.3.3 Installed WeakRefStrings ────────────── v1.4.3 Installed DataFrames ────────────────── v1.8.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed SignedDistanceFields ──────── v0.4.1 Installed XZ_jll ────────────────────── v5.8.3+0 Installed JLLWrappers ───────────────── v1.8.0 Installed Primes ────────────────────── v0.5.7 Installed x265_jll ──────────────────── v4.1.0+0 Installed Pango_jll ─────────────────── v1.57.1+0 Installed GeometryBasics ────────────── v0.4.11 Installed ExactPredicates ───────────── v2.2.9 Installed StructTypes ───────────────── v1.11.0 Installed NLopt ─────────────────────── v1.2.1 Installed IterTools ─────────────────── v1.10.0 Installed Accessors ─────────────────── v0.1.45 Installed DelaunayTriangulation ─────── v0.8.12 Installed JpegTurbo_jll ─────────────── v3.2.0+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed StatisticalTraits ─────────── v3.5.0 Installed FilePathsBase ─────────────── v0.9.24 Installed TiffImages ────────────────── v0.11.9 Installed FFTA ──────────────────────── v0.3.1 Installed GLM ───────────────────────── v1.9.5 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.7.0 Installed HypergeometricFunctions ───── v0.3.29 Installed ConstructionBase ──────────── v1.6.0 Installed Libmount_jll ──────────────── v2.42.0+0 Installed TriplotBase ───────────────── v0.1.0 Installed Compat ────────────────────── v4.18.1 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed LinearAlgebraX ────────────── v0.2.11 Installed Xorg_libX11_jll ───────────── v1.8.13+0 Installed PlotUtils ─────────────────── v1.4.4 Installed TensorCore ────────────────── v0.1.1 Installed RingLists ─────────────────── v0.2.9 Installed PositiveFactorizations ────── v0.2.4 Installed EarCut_jll ────────────────── v2.2.4+0 Installed CoreMath ──────────────────── v0.1.0 Installed PrecompileTools ───────────── v1.3.4 Installed ImageBase ─────────────────── v0.1.7 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.8.0 Installed StructArrays ──────────────── v0.6.21 Installed ProgressMeter ─────────────── v1.11.0 Installed OffsetArrays ──────────────── v1.17.0 Installed TupleTools ────────────────── v1.6.0 Installed WebP ──────────────────────── v0.1.3 Installed Ratios ────────────────────── v0.4.5 Installed ChainRulesCore ────────────── v1.26.1 Installed Animations ────────────────── v0.4.2 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed BioSymbols ────────────────── v5.2.0 Installed LAME_jll ──────────────────── v3.100.3+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed MuladdMacro ───────────────── v0.2.6 Installed Isoband ───────────────────── v0.1.1 Installed IntervalArithmetic ────────── v1.0.10 Installed XML2_jll ──────────────────── v2.15.3+0 Installed FixedPointNumbers ─────────── v0.8.6 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed ScikitLearnBase ───────────── v0.5.0 Installed SpecialFunctions ──────────── v2.8.0 Installed PtrArrays ─────────────────── v1.4.0 Installed IntervalSets ──────────────── v0.7.14 Installed ScientificTypesBase ───────── v3.1.0 Installed LineSearches ──────────────── v7.7.1 Installed Automa ────────────────────── v1.2.0 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.14.3+1 Installed FFTW_jll ──────────────────── v3.3.12+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FFTW ──────────────────────── v1.10.0 Installed Permutations ──────────────── v0.4.23 Installed NLopt_jll ─────────────────── v2.11.0+0 Installed GeoInterface ──────────────── v1.4.1 Installed Xorg_libXext_jll ──────────── v1.3.8+0 Installed IndirectArrays ────────────── v1.0.0 Installed MLJModelInterface ─────────── v1.12.1 Installed SimpleGraphs ──────────────── v0.8.10 Installed SimpleRandom ──────────────── v0.3.2 Installing 61 artifacts Installed artifact LLVMOpenMP 573.2 KiB Installed artifact libass 361.1 KiB Installed artifact Xorg_libXext 187.3 KiB Installed artifact libva 187.1 KiB Installed artifact Arpack 110.5 KiB Installed artifact Libiconv 1022.9 KiB Installed artifact GettextRuntime 345.6 KiB Installed artifact Pango 1.3 MiB Installed artifact Pixman 343.0 KiB Installed artifact Xorg_libXfixes 41.4 KiB Installed artifact Rmath 111.5 KiB Installed artifact Expat 255.2 KiB Installed artifact Bzip2 152.8 KiB Installed artifact Opus 792.2 KiB Installed artifact libdrm 304.7 KiB Installed artifact XML2 1.8 MiB Installed artifact Xorg_libXrender 174.0 KiB Installed artifact LERC 220.3 KiB Installed artifact Fontconfig 443.8 KiB Installed artifact LAME 243.9 KiB Installed artifact EarCut 60.5 KiB Installed artifact libpng 234.7 KiB Installed artifact Libuuid 1.9 MiB Installed artifact FFMPEG 10.2 MiB Installed artifact FFTW 1.8 MiB Installed artifact x264 908.7 KiB Installed artifact libvorbis 226.3 KiB Installed artifact Xorg_libX11 2.3 MiB Installed artifact HarfBuzz 1.2 MiB Installed artifact Graphite2 109.8 KiB Installed artifact libfdk_aac 2.4 MiB Installed artifact Imath 146.9 KiB Installed artifact Giflib 67.6 KiB Installed artifact FriBidi 67.6 KiB Installed artifact x265 1.1 MiB Installed artifact Libmount 3.4 MiB Installed artifact Libglvnd 482.2 KiB Installed artifact Xorg_libXau 25.8 KiB Installed artifact CoreMath 451.0 KiB Installed artifact isoband 23.2 KiB Installed artifact CRlibm 150.8 KiB Installed artifact Libtiff 1.7 MiB Installed artifact Libffi 39.2 KiB Installed artifact Xorg_libpciaccess 23.4 KiB Installed artifact Ogg 213.4 KiB Installed artifact libwebp 1.7 MiB Installed artifact testfiles 4.4 MiB Installed artifact OpenSpecFun 105.4 KiB Installed artifact FreeType2 1.2 MiB Installed artifact OpenEXR 1.0 MiB Installed artifact NLopt 284.1 KiB Installed artifact libsixel 149.0 KiB Installed artifact Xorg_libXdmcp 49.9 KiB Installed artifact Xorg_libxcb 1.3 MiB Installed artifact Xorg_xtrans 39.5 KiB Installed artifact JpegTurbo 705.6 KiB Installed artifact OpenBLASConsistentFPCSR 4.9 MiB Installed artifact Cairo 1.5 MiB Installed artifact XZ 1018.2 KiB Installed artifact libaom 3.9 MiB Installed artifact Glib 4.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.3 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.28.1 [67c07d97] + Automa v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.4.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.16 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.26.1 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.12 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [b7a15901] + CoreMath v0.1.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.20 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.130 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [b86e33f2] + FFTA v0.3.1 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.20.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.32.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.5 [a0844989] + Gamma v1.1.0 [cc18c42c] + GaussianMixtures v0.3.14 [68eda718] + GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.29 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.4 [a98d9a8b] + Interpolations v0.16.3 [d1acc4aa] + IntervalArithmetic v1.0.10 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.12 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [d3d80556] + LineSearches v7.7.1 [9b3f67b0] + LinearAlgebraX v0.2.11 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.3 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.6 [3b2b4ff1] + Multisets v0.4.6 [6f286f6a] + MultivariateStats v0.10.4 [d41bc354] + NLSolversBase v8.0.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.29 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v2.2.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌃ [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.5 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [69de0a69] + Parsers v2.8.6 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + 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[4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.6+0 [29816b5a] + LibSSH2_jll v1.11.103+0 [14a3606d] + MozillaCACerts_jll v2026.7.16 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 32.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.7 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.1 s ✓ MacroTools 1.8 s ✓ InlineStrings 0.5 s ✓ Reexport 0.7 s ✓ MappedArrays 0.7 s ✓ TensorCore 0.8 s ✓ ConstructionBase 0.9 s ✓ Mods 2.2 s ✓ IrrationalConstants 1.2 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 2.3 s ✓ Format 0.9 s ✓ Observables 0.9 s ✓ Twiddle 0.8 s ✓ RoundingEmulator 1.3 s ✓ PolygonOps 0.9 s ✓ IterTools 1.1 s ✓ IntervalSets 0.8 s ✓ CEnum 1.5 s ✓ Functors 1.7 s ✓ Combinatorics 0.8 s ✓ StringViews 0.7 s ✓ RingLists 0.8 s ✓ Inflate 0.6 s ✓ Contour 1.0 s ✓ TupleTools 0.5 s ✓ CommonSolve 0.9 s ✓ TranscodingStreams 0.5 s ✓ LaTeXStrings 0.9 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.6 s ✓ WeakKeyIdDicts 0.6 s ✓ StableRNGs 0.5 s ✓ AbstractLattices 0.7 s ✓ GeoFormatTypes 0.5 s ✓ PtrArrays 0.9 s ✓ Grisu 0.6 s ✓ Adapt 0.6 s ✓ PositiveFactorizations 0.6 s ✓ DataAPI 0.6 s ✓ InvertedIndices 1.0 s ✓ Multisets 0.6 s ✓ LazyModules 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.6 s ✓ ShiftedArrays 0.9 s ✓ AbstractTrees 0.8 s ✓ AbstractFFTs 0.6 s ✓ EnumX 0.7 s ✓ WorkerUtilities 2.3 s ✓ FillArrays 0.6 s ✓ IntegerMathUtils 0.7 s ✓ TriplotBase 0.5 s ✓ IndirectArrays 0.7 s ✓ Extents 0.5 s ✓ RangeArrays 1.0 s ✓ OrderedCollections 1.1 s ✓ ADTypes 0.8 s ✓ DocStringExtensions 0.6 s ✓ UnsafeArrays 4.9 s ✓ BaseDirs 1.0 s ✓ Gamma 1.1 s ✓ OffsetArrays 1.3 s ✓ Compiler 0.5 s ✓ IteratorInterfaceExtensions 2.0 s ✓ Crayons 0.5 s ✓ Suppressor ┌ Warning: DEPRECATION NOTICE │ │ Formatting.jl has been unmaintained for a while, with some serious │ correctness bugs compromising the original purpose of the package. As a result, │ it has been deprecated - consider using an alternative, such as │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ If you are not using Formatting.jl as a direct dependency, please consider │ opening an issue on any packages you are using that do use it as a dependency. │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ package originally brings it in as a dependency. └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 0.8 s ✓ Formatting 0.7 s ✓ NaNMath 0.8 s ✓ Requires 2.3 s ✓ ProgressMeter 0.6 s ✓ DelimitedFiles 1.6 s ✓ WoodburyMatrices 1.0 s ✓ Scratch 1.8 s ✓ SentinelArrays 2.5 s ✓ StructTypes 1.7 s ✓ StructUtils 2.0 s ✓ PDMats 0.8 s ✓ Compat 1.4 s ✓ Preferences 1.1 s ✓ ScientificTypesBase 3.3 s ✓ UnicodeFun 2.8 s ✓ CodeTracking 3.6 s ✓ PkgVersion 2.2 s ✓ SimpleTraits 0.6 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3.1 s ✓ MakieCore 0.5 s ✓ IntervalSets → IntervalSetsRandomExt 0.5 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 0.7 s ✓ Permutations 0.7 s ✓ BioGenerics 1.3 s ✓ CodecZstd 0.8 s ✓ CodecZlib 0.6 s ✓ SignedDistanceFields 1.4 s ✓ Statistics → SparseArraysExt 2.5 s ✓ FixedPointNumbers 0.7 s ✓ ScikitLearnBase 1.0 s ✓ Distances 0.5 s ✓ IntervalSets → IntervalSetsStatisticsExt 0.7 s ✓ AliasTables 0.8 s ✓ Showoff 0.8 s ✓ ArrayInterface 1.4 s ✓ Adapt → AdaptSparseArraysExt 0.7 s ✓ Missings 0.8 s ✓ PooledArrays 1.6 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.8 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.5 s ✓ AbstractFFTs → AbstractFFTsTestExt 2.0 s ✓ FillArrays → FillArraysSparseArraysExt 1.0 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Primes 1.8 s ✓ GeoInterface 0.5 s ✓ ADTypes → ADTypesConstructionBaseExt 1.6 s ✓ DifferentiationInterface 1.1 s ✓ LogExpFunctions 1.1 s ✓ PikaParser 1.6 s ✓ HypergeometricFunctions 0.6 s ✓ PaddedViews 0.5 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.6 s ✓ StackViews 0.5 s ✓ TableTraits 0.5 s ✓ Ratios 7.4 s ✓ FileIO 1.5 s ✓ AxisAlgorithms 0.8 s ✓ RelocatableFolders 0.8 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.9 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 1.7 s ✓ PrecompileTools 1.2 s ✓ JLLWrappers 1.0 s ✓ StatisticalTraits 13.5 s ✓ JuliaInterpreter 1.9 s ✓ Setfield 1.5 s ✓ AxisArrays 5.0 s ✓ ColorTypes 1.4 s ✓ Distances → DistancesSparseArraysExt 0.9 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.4 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 4.4 s ✓ Accessors 1.5 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 0.6 s ✓ MosaicViews 1.4 s ✓ Tables 0.6 s ✓ Ratios → RatiosFixedPointNumbersExt 2.1 s ✓ ChainRulesCore 1.5 s ✓ FilePathsBase 3.6 s ✓ DataStructures 2.8 s ✓ BioSymbols 6.6 s ✓ StringManipulation 14.0 s ✓ SIMD 13.6 s ✓ StaticArrays 2.1 s ✓ MuladdMacro 19.8 s ✓ Automa 3.1 s ✓ RecipesBase 9.8 s ✓ Parsers 1.9 s ✓ Libffi_jll 1.1 s ✓ EarCut_jll 1.1 s ✓ Bzip2_jll 1.1 s ✓ isoband_jll 1.2 s ✓ OpenBLASConsistentFPCSR_jll 1.2 s ✓ XZ_jll 1.1 s ✓ NLopt_jll 1.3 s ✓ Rmath_jll 1.2 s ✓ OpenSpecFun_jll 0.9 s ✓ Xorg_xtrans_jll 1.2 s ✓ Opus_jll 4.5 s ✓ IntelOpenMP_jll 1.1 s ✓ x265_jll 1.3 s ✓ libpng_jll 1.2 s ✓ CRlibm_jll 4.6 s ✓ oneTBB_jll 1.1 s ✓ Imath_jll 1.2 s ✓ Arpack_jll 1.3 s ✓ Libmount_jll 1.1 s ✓ libfdk_aac_jll 1.3 s ✓ Libuuid_jll 1.2 s ✓ FriBidi_jll 1.3 s ✓ LERC_jll 1.1 s ✓ Xorg_libXau_jll 1.3 s ✓ Ogg_jll 1.1 s ✓ FFTW_jll 1.2 s ✓ LAME_jll 1.2 s ✓ CoreMath_jll 1.2 s ✓ Graphite2_jll 1.3 s ✓ x264_jll 1.0 s ✓ Xorg_libpciaccess_jll 1.0 s ✓ LLVMOpenMP_jll 1.1 s ✓ Libiconv_jll 1.3 s ✓ libaom_jll 1.3 s ✓ Xorg_libXdmcp_jll 1.3 s ✓ Giflib_jll 1.3 s ✓ Expat_jll 1.2 s ✓ JpegTurbo_jll 3.4 s ✓ MLJModelInterface 22.9 s ✓ LoweredCodeUtils 4.3 s ✓ Colors 1.2 s ✓ ColorVectorSpace 3.9 s ✓ QOI 1.2 s ✓ FiniteDiff 2.0 s ✓ Accessors → TestExt 2.0 s ✓ Accessors → IntervalSetsExt 1.2 s ✓ Accessors → LinearAlgebraExt 1.1 s ✓ StructArrays 1.0 s ✓ StructUtils → StructUtilsTablesExt 5.9 s ✓ StableHashTraits 1.4 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.5 s ✓ ADTypes → ADTypesChainRulesCoreExt 0.6 s ✓ Distances → DistancesChainRulesCoreExt 0.5 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 0.7 s ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2.8 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2.4 s ✓ FilePathsBase → FilePathsBaseTestExt 0.8 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.1 s ✓ FilePaths 1.2 s ✓ SortingAlgorithms 2.3 s ✓ QuadGK 1.8 s ✓ SimplePartitions 10.0 s ✓ BioSequences 41.8 s ✓ PrettyTables 49.2 s ✓ TiffImages 1.4 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.4 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.1 s ✓ Adapt → AdaptStaticArraysExt 2.1 s ✓ FillArrays → FillArraysStaticArraysExt 1.7 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.5 s ✓ Accessors → StaticArraysExt 2.4 s ✓ FFTA 17.4 s ✓ FASTX 2.0 s ✓ IntervalSets → IntervalSetsRecipesBaseExt 31.5 s ✓ Polynomials 5.4 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 1.2 s ✓ FreeType2_jll 0.8 s ✓ Isoband 1.6 s ✓ NLopt 1.6 s ✓ Rmath 5.3 s ✓ SpecialFunctions 1.0 s ✓ CRlibm Downloading artifact: IntelOpenMP Downloading artifact: oneTBB 9.2 s ✓ MKL_jll 1.3 s ✓ OpenEXR_jll 1.1 s ✓ Arpack 1.0 s ✓ libvorbis_jll 0.7 s ✓ CoreMath 1.0 s ✓ libdrm_jll 0.9 s ✓ Pixman_jll 1.0 s ✓ XML2_jll 1.0 s ✓ GettextRuntime_jll 1.2 s ✓ Xorg_libxcb_jll 1.1 s ✓ Libtiff_jll 1.0 s ✓ libsixel_jll 6.7 s ✓ Revise 0.9 s ✓ Animations 0.9 s ✓ Graphics 31.9 s ✓ ImageCore 9.0 s ✓ ColorSchemes 1.7 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 1.5 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 0.7 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5.6 s ✓ Roots 1.6 s ✓ StructArrays → StructArraysSparseArraysExt 0.7 s ✓ StructArrays → StructArraysLinearAlgebraExt 0.7 s ✓ StructArrays → StructArraysAdaptExt 1.6 s ✓ StructArrays → StructArraysStaticArraysExt 1.6 s ✓ Accessors → StructArraysExt 5.1 s ✓ StatsBase 84.0 s ✓ DataFrames 7.7 s ✓ NearestNeighbors 4.4 s ✓ Interpolations 1.2 s ✓ FASTX → BioSequencesExt 5.3 s ✓ Polynomials → PolynomialsMakieCoreExt 3.9 s ✓ Polynomials → PolynomialsChainRulesCoreExt 4.0 s ✓ SimplePolynomials 3.5 s ✓ ColorBrewer 2.0 s ✓ WeakRefStrings 1.3 s ✓ FreeType 1.5 s ✓ Fontconfig_jll 3.5 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1.5 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.5 s ✓ StatsFuns 2.9 s ✓ FFTW 4.6 s ✓ OpenEXR 4.4 s ✓ IntervalArithmetic 0.9 s ✓ LightXML 1.2 s ✓ Glib_jll 1.6 s ✓ Xorg_libX11_jll 4.4 s ✓ Revise → DistributedExt 2.6 s ✓ ImageBase 3.2 s ✓ PNGFiles 7.6 s ✓ Sixel 5.9 s ✓ JpegTurbo 19.1 s ✓ PlotUtils 1.0 s ✓ NLSolversBase 0.9 s ✓ Roots → RootsChainRulesCoreExt 5.3 s ✓ GeometryBasics 5.5 s ✓ ParallelKMeans 4.7 s ✓ Clustering 3.9 s ✓ LinearAlgebraX 23.2 s ✓ CSV 3.3 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 0.9 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 5.0 s ✓ StatsModels 3.4 s ✓ Polynomials → PolynomialsFFTWExt 1.7 s ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1.1 s ✓ IntervalArithmetic → IntervalArithmeticIrrationalConstantsExt 1.0 s ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1.2 s ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 0.9 s ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1.2 s ✓ Xorg_libXfixes_jll 1.5 s ✓ Xorg_libXrender_jll 1.2 s ✓ Xorg_libXext_jll 4.8 s ✓ ImageAxes 1.2 s ✓ LineSearches 2.6 s ✓ Packing 10.9 s ✓ GridLayoutBase 3.6 s ✓ ShaderAbstractions 4.3 s ✓ FreeTypeAbstraction 10.7 s ✓ Distributions 6.1 s ✓ ExactPredicates 1.1 s ✓ Cairo_jll 1.3 s ✓ libva_jll 1.1 s ✓ Libglvnd_jll 2.9 s ✓ ImageMetadata 5.5 s ✓ Optim 21.9 s ✓ MathTeXEngine 6.3 s ✓ GLM 4.9 s ✓ Distributions → DistributionsTestExt 3.8 s ✓ SimpleRandom 4.3 s ✓ Distributions → DistributionsChainRulesCoreExt 4.7 s ✓ MultivariateStats 7.1 s ✓ GaussianMixtures 1.3 s ✓ HarfBuzz_jll 1.7 s ✓ libwebp_jll 6.4 s ✓ Netpbm 21.9 s ✓ PhyloNetworks 8.4 s ✓ SimpleGraphs 5.1 s ✓ KernelDensity 1.5 s ✓ libass_jll 1.5 s ✓ Pango_jll 5.7 s ✓ WebP 12.2 s ✓ DelaunayTriangulation 1.7 s ✓ FFMPEG_jll 1.7 s ✓ Cairo 4.3 s ✓ ImageIO ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning. └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55 200.6 s ✓ Makie ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base Base_compiler.jl:58 [2] func2string(func::typeof(MakieCore.linesegments)) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9 [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21 [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22 [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255 [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252 [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6 [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129 [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] [14] top-level scope @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 [15] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [16] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 [17] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [18] macro expansion @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [20] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 [21] include(mod::Module, _path::String) @ Base Base.jl:329 [22] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [23] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 ✗ CairoMakie ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("13f3f980-e62b-5c42-98c6-ff1f3baf88f0"), "CairoMakie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [13] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5 [14] include(mod::Module, _path::String) @ Base Base.jl:329 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [16] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 ✗ PhyloClustering 347 dependencies successfully precompiled in 1398 seconds. 42 already precompiled. 5 dependencies had output during precompilation: ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ┌ CairoMakie │ ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` │ Stacktrace: │ [1] getproperty(x::Core.TypeName, f::Symbol) │ @ Base Base_compiler.jl:58 │ [2] func2string(func::typeof(MakieCore.linesegments)) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9 │ [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21 │ [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22 │ [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255 │ [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252 │ [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6 │ [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129 │ [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 │ [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 │ [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 │ [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 │ [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] │ [14] top-level scope │ @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 │ [15] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:330 │ [16] top-level scope │ @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 │ [17] macro expansion │ @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] │ [18] macro expansion │ @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] │ [19] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:330 │ [20] top-level scope │ @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 │ [21] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [22] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [23] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 │ in expression starting at stdin:5 └ ┌ Makie │ ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning. │ └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55 └ ┌ PhyloClustering │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("13f3f980-e62b-5c42-98c6-ff1f3baf88f0"), "CairoMakie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 │ [12] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:330 │ [13] top-level scope │ @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5 │ [14] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [16] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 │ in expression starting at stdin:5 └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ERROR: LoadError: The following 2 packages failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_2VVXTU" (ProcessExited(1)). PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.14/PhyloClustering/jl_mwjPfe" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1383.19s ################################################################################ # Testing # Testing PhyloClustering Status `/tmp/jl_Y8Xnq5/Project.toml` ⌅ [13f3f980] CairoMakie v0.11.9 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.1.0 [b4f34e82] Distances v0.10.12 [59287772] Formatting v0.4.3 [cc18c42c] GaussianMixtures v0.3.14 [6f286f6a] MultivariateStats v0.10.4 [42b8e9d4] ParallelKMeans v1.1.0 [2e4ec7c6] PhyloClustering v0.2.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [295af30f] Revise v3.16.2 [860ef19b] StableRNGs v1.0.4 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Y8Xnq5/Manifest.toml` [47edcb42] ADTypes v1.22.3 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.28.1 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.4.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.16 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.26.1 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v3.0.2 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.12 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [b7a15901] CoreMath v0.1.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.20 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.130 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [b86e33f2] FFTA v0.3.1 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.20.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [6a86dc24] FiniteDiff v2.32.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 [59287772] Formatting v0.4.3 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 ⌅ [d9f16b24] Functors v0.4.12 [38e38edf] GLM v1.9.5 [a0844989] Gamma v1.1.0 [cc18c42c] GaussianMixtures v0.3.14 [68eda718] GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.29 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.4 [a98d9a8b] Interpolations v0.16.3 [d1acc4aa] IntervalArithmetic v1.0.10 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b835a17e] 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OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: importing deprecated binding Makie.Combined into CairoMakie. , use Plot instead. WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. , use VertexGrid instead. WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. , use CellGrid instead. ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace: [1] getproperty(x::Core.TypeName, f::Symbol) @ Base Base_compiler.jl:58 [2] func2string(func::typeof(MakieCore.linesegments)) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9 [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21 [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22 [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255 [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252 [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6 [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129 [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] [14] top-level scope @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 [15] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [16] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 [17] macro expansion @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] [18] macro expansion @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [20] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 [21] include(mod::Module, _path::String) @ Base Base.jl:329 [22] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [23] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("13f3f980-e62b-5c42-98c6-ff1f3baf88f0"), "CairoMakie") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:330 [13] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:5 [14] include(mod::Module, _path::String) @ Base Base.jl:329 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [16] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ CairoMakie │ WARNING: importing deprecated binding Makie.Combined into CairoMakie. │ , use Plot instead. │ WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. │ , use VertexGrid instead. │ WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. │ , use CellGrid instead. │ ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` │ Stacktrace: │ [1] getproperty(x::Core.TypeName, f::Symbol) │ @ Base Base_compiler.jl:58 │ [2] func2string(func::typeof(MakieCore.linesegments)) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9 │ [3] plotkey(::Core.TypeEgal{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21 │ [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22 │ [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255 │ [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol) │ @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252 │ [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6 │ [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129 │ [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 │ [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) │ @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 │ [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 │ [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 │ [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat) │ @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] │ [14] top-level scope │ @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 │ [15] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:330 │ [16] top-level scope │ @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 │ [17] macro expansion │ @ ~/.julia/packages/PrecompileTools/QUxvR/src/workloads.jl:70 [inlined] │ [18] macro expansion │ @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] │ [19] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:330 │ [20] top-level scope │ @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 │ [21] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [22] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [23] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 │ in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 │ in expression starting at stdin:5 └ ┌ PhyloClustering │ [Output was shown above] └ ERROR: LoadError: The following 2 packages failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_yjcwBC" (ProcessExited(1)). PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.14/PhyloClustering/jl_Tp8Enu" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 Testing failed after 93.93s ERROR: LoadError: Package PhyloClustering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1628.71s: package fails to precompile