Package evaluation to test OrdinalGWAS on Julia 1.14.0-DEV.2802 (918269a29b*) started at 2026-07-29T16:13:18.400 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.61s ################################################################################ # Installation # Installing OrdinalGWAS... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.1.1 Installed OrderedCollections ─────────────── v1.8.2 Installed MUMPS_seq_jll ──────────────────── v500.900.0+0 Installed HypothesisTests ────────────────── v0.11.8 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed Glob ───────────────────────────── v1.5.0 Installed SentinelArrays ─────────────────── v1.4.10 Installed InlineStrings ──────────────────── v1.4.5 Installed Xorg_libpciaccess_jll ──────────── v0.19.0+0 Installed FileIO ─────────────────────────── v1.20.0 Installed CpuId ──────────────────────────── v0.3.1 Installed Ipopt_jll ──────────────────────── v300.1400.1902+0 Installed NaNMath ────────────────────────── v1.1.4 Installed Tables ─────────────────────────── v1.13.0 Installed StaticArrayInterface ───────────── v1.10.0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed QuadGK ─────────────────────────── v2.11.3 Installed Reexport ───────────────────────── v1.2.2 Installed InverseFunctions ───────────────── v0.1.17 Installed DBInterface ────────────────────── v2.6.1 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.5.2 Installed Static ─────────────────────────── v1.4.4 Installed Crayons ────────────────────────── v4.2.0 Installed SortingAlgorithms ──────────────── v1.2.3 Installed DataStructures ─────────────────── v0.19.6 Installed LaTeXStrings ───────────────────── v1.4.0 Installed TableTraits ────────────────────── v1.0.1 Installed TZJData ────────────────────────── v1.5.0+2025b Installed UnPack ─────────────────────────── v1.0.2 Installed FillArrays ─────────────────────── v1.17.0 Installed VCFTools ───────────────────────── v0.2.10 Installed DiffResults ────────────────────── v1.1.0 Installed MacroTools ─────────────────────── v0.5.16 Installed CodecZstd ──────────────────────── v0.8.7 Installed ManualMemory ───────────────────── v0.1.8 Installed DelimitedFiles ─────────────────── v1.9.1 Installed VectorizationBase ──────────────── v0.21.74 Installed ExprTools ──────────────────────── v0.1.11 Installed ArrayInterface ─────────────────── v7.28.1 Installed StatsBase ──────────────────────── v0.34.12 Installed CodecZlib ──────────────────────── v0.7.8 Installed CommonSubexpressions ───────────── v0.3.1 Installed Roots ──────────────────────────── v3.0.6 Installed DataValueInterfaces ────────────── v1.0.0 Installed HostCPUFeatures ────────────────── v0.1.18 Installed IrrationalConstants ────────────── v0.2.6 Installed LayoutPointers ─────────────────── v0.1.17 Installed TimeZones ──────────────────────── v1.22.2 Installed Hwloc_jll ──────────────────────── v2.14.0+0 Installed PDMats ─────────────────────────── v0.11.40 Installed SPRAL_jll ──────────────────────── v2025.9.18+0 Installed PooledArrays ───────────────────── v1.4.3 Installed BufferedStreams ────────────────── v1.2.2 Installed Scratch ────────────────────────── v1.3.0 Installed CodecXz ────────────────────────── v0.7.4 Installed SQLite ─────────────────────────── v1.8.1 Installed MathOptInterface ───────────────── v1.51.2 Installed WorkerUtilities ────────────────── v1.6.1 Installed CommonSolve ────────────────────── v0.2.12 Installed ForwardDiff ────────────────────── v1.4.3 Installed StatsModels ────────────────────── v0.7.10 Installed SLEEFPirates ───────────────────── v0.6.46 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed OrdinalGWAS ────────────────────── v0.7.2 Installed CompositionsBase ───────────────── v0.1.2 Installed DocStringExtensions ────────────── v0.9.5 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed ShiftedArrays ──────────────────── v2.0.0 Installed SIMD ───────────────────────────── v3.7.2 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Combinatorics ──────────────────── v1.1.0 Installed DataAPI ────────────────────────── v1.16.0 Installed CSV ────────────────────────────── v0.10.16 Installed SciMLPublic ────────────────────── v1.2.4 Installed StringManipulation ─────────────── v0.4.6 Installed LogExpFunctions ────────────────── v1.0.1 Installed StaticArraysCore ───────────────── v1.4.4 Installed Requires ───────────────────────── v1.3.1 Installed InvertedIndices ────────────────── v1.3.1 Installed PrettyTables ───────────────────── v3.4.2 Installed DiffRules ──────────────────────── v1.16.0 Installed OpenBLAS32_jll ─────────────────── v0.3.34+0 Installed Parsers ────────────────────────── v2.8.6 Installed Gamma ──────────────────────────── v1.1.0 Installed Distributions ──────────────────── v0.25.130 Installed JSON ───────────────────────────── v0.21.4 Installed Rmath ──────────────────────────── v0.9.0 Installed BioGenerics ────────────────────── v0.1.5 Installed StatsFuns ──────────────────────── v2.2.0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed MutableArithmetics ─────────────── v1.8.0 Installed RData ──────────────────────────── v0.8.3 Installed WeakRefStrings ─────────────────── v1.4.3 Installed JLLWrappers ────────────────────── v1.8.0 Installed NLopt ──────────────────────────── v0.6.5 Installed XZ_jll ─────────────────────────── v5.8.3+0 Installed BGZFStreams ────────────────────── v0.3.2 Installed DataFrames ─────────────────────── v1.8.2 Installed VariantCallFormat ──────────────── v0.5.9 Installed ThreadingUtilities ─────────────── v0.5.6 Installed Accessors ──────────────────────── v0.1.45 Installed OrdinalMultinomialModels ───────── v0.4.5 Installed GLM ────────────────────────────── v1.9.5 Installed Adapt ──────────────────────────── v4.7.0 Installed HypergeometricFunctions ────────── v0.3.29 Installed CategoricalArrays ──────────────── v0.10.9 Installed FilePathsBase ──────────────────── v0.9.24 Installed RDatasets ──────────────────────── v0.7.7 Installed ConstructionBase ───────────────── v1.6.0 Installed LoopVectorization ──────────────── v0.12.174 Installed TranscodingStreams ─────────────── v0.9.13 Installed Compat ─────────────────────────── v4.18.1 Installed dlfcn_win32_jll ────────────────── v1.4.2+0 (no artifacts on this platform) Installed StatsAPI ───────────────────────── v1.8.0 Installed Statistics ─────────────────────── v1.11.1 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed ProgressMeter ──────────────────── v1.11.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.4 Installed SpecialFunctions ───────────────── v2.8.0 Installed Ipopt ──────────────────────────── v1.15.0 Installed Automa ─────────────────────────── v1.2.0 Installed CPUSummary ─────────────────────── v0.2.7 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.4.0 Installed SnpArrays ──────────────────────── v0.3.23 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed SQLite_jll ─────────────────────── v3.53.2+0 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed NLopt_jll ──────────────────────── v2.11.0+0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed MathProgBase ───────────────────── v0.7.8 Installed Mocking ────────────────────────── v0.8.1 Installed BGEN ───────────────────────────── v0.1.17 Installing 18 artifacts Installed artifact Xorg_libpciaccess 23.4 KiB Installed artifact OpenSpecFun 105.4 KiB Installed artifact SPRAL 631.5 KiB Installed artifact ASL 227.7 KiB Installed artifact MUMPS_seq 4.4 MiB Installed artifact XML2 2.0 MiB Installed artifact NLopt 284.1 KiB Installed artifact Ipopt 1010.1 KiB Installed artifact tzjdata 49.6 KiB Installed artifact testfiles 4.4 MiB Installed artifact Hwloc 3.0 MiB Installed artifact METIS 393.1 KiB Installed artifact Libiconv 1022.9 KiB Installed artifact XZ 1018.2 KiB Installed artifact SQLite 1.2 MiB Installed artifact Rmath 111.5 KiB Installed artifact Bzip2 152.8 KiB Installed artifact OpenBLAS32 5.0 MiB Updating `~/.julia/environments/v1.14/Project.toml` [00428148] + OrdinalGWAS v0.7.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.28.1 [67c07d97] + Automa v1.2.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 ⌅ [324d7699] + CategoricalArrays v0.10.9 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.12 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.1.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.2.0 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [31c24e10] + Distributions v0.25.130 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.11 [5789e2e9] + FileIO v1.20.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [f6369f11] + ForwardDiff v1.4.3 [38e38edf] + GLM v1.9.5 [a0844989] + Gamma v1.1.0 [c27321d9] + Glob v1.5.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.29 [09f84164] + HypothesisTests v0.11.8 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.15.0 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌃ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.51.2 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.8.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [00428148] + OrdinalGWAS v0.7.2 [b51826c6] + OrdinalMultinomialModels v0.4.5 [90014a1f] + PDMats v0.11.40 [69de0a69] + Parsers v2.8.6 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 ⌅ [df47a6cb] + RData v0.8.3 ⌅ [ce6b1742] + RDatasets v0.7.7 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.6 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [0aa819cd] + SQLite v1.8.1 [431bcebd] + SciMLPublic v1.2.4 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [aedffcd0] + Static v1.4.4 [0d7ed370] + StaticArrayInterface v1.10.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.4.6 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [8290d209] + ThreadingUtilities v0.5.6 [f269a46b] + TimeZones v1.22.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [9cc047cb] + Ipopt_jll v300.1400.1902+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.900.0+0 [079eb43e] + NLopt_jll v2.11.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.34+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [319450e9] + SPRAL_jll v2025.9.18+0 [76ed43ae] + SQLite_jll v3.53.2+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.6+0 [29816b5a] + LibSSH2_jll v1.11.103+0 [14a3606d] + MozillaCACerts_jll v2026.7.16 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 16.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.5 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.5 s ✓ MacroTools 1.4 s ✓ InlineStrings 0.5 s ✓ Reexport 0.7 s ✓ ConstructionBase 1.8 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.5 s ✓ StatsAPI 1.7 s ✓ Combinatorics 0.4 s ✓ CommonSolve 0.5 s ✓ LaTeXStrings 0.6 s ✓ Glob 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.6 s ✓ IfElse 0.5 s ✓ PtrArrays 0.5 s ✓ ManualMemory 0.6 s ✓ Adapt 0.6 s ✓ DataAPI 0.5 s ✓ SciMLPublic 0.6 s ✓ CommonWorldInvalidations 0.6 s ✓ InvertedIndices 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.5 s ✓ ShiftedArrays 0.7 s ✓ WorkerUtilities 0.6 s ✓ TZJData 2.3 s ✓ FillArrays 0.6 s ✓ ExprTools 0.5 s ✓ UnPack 0.5 s ✓ DBInterface 1.1 s ✓ OrderedCollections 0.8 s ✓ DocStringExtensions 0.9 s ✓ Gamma 1.2 s ✓ OffsetArrays 0.7 s ✓ BufferedStreams 0.5 s ✓ SIMDTypes 0.5 s ✓ IteratorInterfaceExtensions 1.9 s ✓ Crayons 0.7 s ✓ NaNMath 0.8 s ✓ Requires 2.1 s ✓ ProgressMeter 0.6 s ✓ DelimitedFiles 2.7 s ✓ MathProgBase 1.0 s ✓ Scratch 1.8 s ✓ SentinelArrays 1.4 s ✓ CpuId 1.8 s ✓ PDMats 0.7 s ✓ Compat 1.3 s ✓ Preferences 1.7 s ✓ TranscodingStreams 11.8 s ✓ MutableArithmetics 0.9 s ✓ CommonSubexpressions 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.5 s ✓ Statistics → SparseArraysExt 0.5 s ✓ DiffResults 0.8 s ✓ AliasTables 1.3 s ✓ ThreadingUtilities 0.7 s ✓ ArrayInterface 1.3 s ✓ Adapt → AdaptSparseArraysExt 0.7 s ✓ Missings 0.7 s ✓ PooledArrays 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.2 s ✓ InverseFunctions → InverseFunctionsTestExt 0.6 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.8 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 3.2 s ✓ DataStructures 1.0 s ✓ LogExpFunctions 1.5 s ✓ HypergeometricFunctions 0.5 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.4 s ✓ TableTraits 7.4 s ✓ FileIO 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.5 s ✓ PrecompileTools 1.2 s ✓ JLLWrappers 1.4 s ✓ BioGenerics 1.8 s ✓ CodecZstd 1.3 s ✓ CodecZlib 0.8 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.4 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.2 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2.7 s ✓ CategoricalArrays 4.4 s ✓ Accessors 0.8 s ✓ SortingAlgorithms 1.9 s ✓ QuadGK 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.4 s ✓ Tables 1.8 s ✓ FilePathsBase 0.5 s ✓ Mocking 6.0 s ✓ StringManipulation 12.4 s ✓ SIMD 19.5 s ✓ Automa 9.5 s ✓ Parsers 1.7 s ✓ Static 1.3 s ✓ OpenBLAS32_jll 0.8 s ✓ Bzip2_jll 1.0 s ✓ XZ_jll 1.1 s ✓ NLopt_jll 0.8 s ✓ Rmath_jll 0.8 s ✓ OpenSpecFun_jll 0.8 s ✓ ASL_jll 0.8 s ✓ dlfcn_win32_jll 0.8 s ✓ METIS_jll 0.9 s ✓ Xorg_libpciaccess_jll 0.9 s ✓ Libiconv_jll 1.2 s ✓ BGZFStreams 0.8 s ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1.3 s ✓ Accessors → TestExt 2.4 s ✓ Accessors → LinearAlgebraExt 4.4 s ✓ StatsBase 2.6 s ✓ FilePathsBase → FilePathsBaseTestExt 0.8 s ✓ FilePathsBase → FilePathsBaseMmapExt 5.8 s ✓ TimeZones 45.6 s ✓ PrettyTables 2.8 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 0.8 s ✓ BitTwiddlingConvenienceFunctions 2.7 s ✓ CPUSummary 2.7 s ✓ StaticArrayInterface 1.5 s ✓ CodecBzip2 1.5 s ✓ CodecXz 1.5 s ✓ Rmath 5.3 s ✓ SpecialFunctions 1.2 s ✓ SQLite_jll 1.3 s ✓ MUMPS_seq_jll 1.2 s ✓ XML2_jll [ Info: Compiling VCF parser... 16.5 s ✓ VariantCallFormat 5.3 s ✓ Roots 1.7 s ✓ PDMats → StatsBaseExt 88.9 s ✓ DataFrames 1.0 s ✓ CategoricalArrays → CategoricalArraysJSONExt 2.2 s ✓ WeakRefStrings 2.4 s ✓ HostCPUFeatures 1.9 s ✓ PolyesterWeave 1.0 s ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 0.9 s ✓ CloseOpenIntervals 1.1 s ✓ LayoutPointers 1.0 s ✓ DiffRules 2.1 s ✓ StatsFuns 1.8 s ✓ Hwloc_jll 20.5 s ✓ RData 25.1 s ✓ CSV 4.7 s ✓ SQLite 16.6 s ✓ VectorizationBase 7.0 s ✓ ForwardDiff 1.2 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 5.4 s ✓ StatsModels 1.1 s ✓ SPRAL_jll 16.2 s ✓ RDatasets 3.4 s ✓ BGEN 2.7 s ✓ SLEEFPirates 98.0 s ✓ MathOptInterface 1.3 s ✓ Roots → RootsForwardDiffExt 10.0 s ✓ Distributions 1.3 s ✓ Ipopt_jll 42.8 s ✓ LoopVectorization 8.6 s ✓ NLopt 6.0 s ✓ GLM 4.5 s ✓ Distributions → DistributionsTestExt 4.6 s ✓ HypothesisTests 1.0 s ✓ Ipopt 2.8 s ✓ LoopVectorization → SpecialFunctionsExt 5.6 s ✓ VCFTools 56.3 s ✓ Ipopt → IpoptMathOptInterfaceExt julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [1151] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x7366be1f8ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7366be194394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x7366be195249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6276355 (Pool: 6276115; Big: 240); GC: 11 ✗ SnpArrays 12.7 s ✓ OrdinalMultinomialModels ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 in expression starting at stdin:5 ✗ OrdinalGWAS 166 dependencies successfully precompiled in 791 seconds. 39 already precompiled. 3 dependencies had output during precompilation: ┌ SnpArrays │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [1151] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x7366be1f8ebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x7366be194394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x7366be195249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6276355 (Pool: 6276115; Big: 240); GC: 11 └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ┌ OrdinalGWAS │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 2 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_uEdCmn" (ProcessSignaled(6)). OrdinalGWAS Failed to precompile OrdinalGWAS [00428148-03d9-50ae-bfb7-4a690d5612f1] to "/home/pkgeval/.julia/compiled/v1.14/OrdinalGWAS/jl_5gNNCY" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 809.03s ################################################################################ # Testing # Testing OrdinalGWAS Status `/tmp/jl_Idq6Gb/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [31c24e10] Distributions v0.25.130 [b8f27783] MathOptInterface v1.51.2 [00428148] OrdinalGWAS v0.7.2 [b51826c6] OrdinalMultinomialModels v0.4.5 [189a3867] Reexport v1.2.2 [4e780e97] SnpArrays v0.3.23 [3eaba693] StatsModels v0.7.10 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [37e2e46d] LinearAlgebra v1.14.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Idq6Gb/Manifest.toml` [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.28.1 [67c07d97] Automa v1.2.0 ⌅ [6db4b851] BGEN v0.1.17 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 ⌅ [324d7699] CategoricalArrays v0.10.9 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.12 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.1.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [31c24e10] Distributions v0.25.130 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.11 [5789e2e9] FileIO v1.20.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [f6369f11] ForwardDiff v1.4.3 [38e38edf] GLM v1.9.5 [a0844989] Gamma v1.1.0 [c27321d9] Glob v1.5.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [34004b35] HypergeometricFunctions v0.3.29 [09f84164] HypothesisTests v0.11.8 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [b6b21f68] Ipopt v1.15.0 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 ⌃ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.51.2 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.8.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [00428148] OrdinalGWAS v0.7.2 [b51826c6] OrdinalMultinomialModels v0.4.5 [90014a1f] PDMats v0.11.40 [69de0a69] Parsers v2.8.6 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 ⌅ [df47a6cb] RData v0.8.3 ⌅ [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.6 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [0aa819cd] SQLite v1.8.1 [431bcebd] SciMLPublic v1.2.4 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.4 [0d7ed370] StaticArrayInterface v1.10.0 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.6 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [8290d209] ThreadingUtilities v0.5.6 [f269a46b] TimeZones v1.22.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.14.0+0 [9cc047cb] Ipopt_jll v300.1400.1902+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [d7ed1dd3] MUMPS_seq_jll v500.900.0+0 [079eb43e] NLopt_jll v2.11.0+0 [656ef2d0] OpenBLAS32_jll v0.3.34+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [319450e9] SPRAL_jll v2025.9.18+0 [76ed43ae] SQLite_jll v3.53.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.6+0 [29816b5a] LibSSH2_jll v1.11.103+0 [14a3606d] MozillaCACerts_jll v2026.7.16 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [1169] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x73464ddf2ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x73464dd8e394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x73464dd8f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6276052 (Pool: 6275812; Big: 240); GC: 11 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ SnpArrays │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [1169] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x73464ddf2ebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x73464dd8e394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:867:17 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x73464dd8f249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6276052 (Pool: 6275812; Big: 240); GC: 11 └ ┌ OrdinalGWAS │ [Output was shown above] └ ERROR: LoadError: The following 2 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_v59RYa" (ProcessSignaled(6)). OrdinalGWAS Failed to precompile OrdinalGWAS [00428148-03d9-50ae-bfb7-4a690d5612f1] to "/home/pkgeval/.julia/compiled/v1.14/OrdinalGWAS/jl_W0zylb" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/test/runtests.jl:1 Testing failed after 56.37s ERROR: LoadError: Package OrdinalGWAS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 950.88s: package fails to precompile