Package evaluation to test OpenADMIXTURE on Julia 1.14.0-DEV.2802 (918269a29b*) started at 2026-07-29T12:55:52.877 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.54s ################################################################################ # Installation # Installing OpenADMIXTURE... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.1.1 Installed SparseKmeansFeatureRanking ─────── v0.1.2 Installed DataStructures ─────────────────── v0.19.6 Installed Formatting ─────────────────────── v0.4.3 Installed FilePathsBase ──────────────────── v0.9.24 Installed Glob ───────────────────────────── v1.5.0 Installed CodecZstd ──────────────────────── v0.8.7 Installed ManualMemory ───────────────────── v0.1.8 Installed VectorizationBase ──────────────── v0.21.74 Installed SLEEFPirates ───────────────────── v0.6.46 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed InlineStrings ──────────────────── v1.4.5 Installed StatsBase ──────────────────────── v0.34.12 Installed Adapt ──────────────────────────── v3.7.2 Installed DelimitedFiles ─────────────────── v1.9.1 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed OrderedCollections ─────────────── v2.0.1 Installed CodecZlib ──────────────────────── v0.7.8 Installed SIMDTypes ──────────────────────── v0.1.0 Installed LoopVectorization ──────────────── v0.12.174 Installed CSV ────────────────────────────── v0.10.16 Installed TranscodingStreams ─────────────── v0.9.13 Installed Compat ─────────────────────────── v4.18.1 Installed ArrayInterface ─────────────────── v7.7.1 Installed StrideArraysCore ───────────────── v0.5.9 Installed Suppressor ─────────────────────── v0.2.8 Installed HostCPUFeatures ────────────────── v0.1.18 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DataAPI ────────────────────────── v1.16.0 Installed InvertedIndices ────────────────── v1.3.1 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.8.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed PrecompileTools ────────────────── v1.3.4 Installed SentinelArrays ─────────────────── v1.4.10 Installed CpuId ──────────────────────────── v0.3.1 Installed ProgressMeter ──────────────────── v1.11.0 Installed IrrationalConstants ────────────── v0.2.6 Installed OffsetArrays ───────────────────── v1.17.0 Installed StaticArrayInterface ───────────── v1.10.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed Distances ──────────────────────── v0.10.12 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed StringManipulation ─────────────── v0.4.6 Installed NaNMath ────────────────────────── v1.1.4 Installed SciMLPublic ────────────────────── v1.2.4 Installed DiffRules ──────────────────────── v1.16.0 Installed LogExpFunctions ────────────────── v1.0.1 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed CPUSummary ─────────────────────── v0.2.7 Installed Requires ───────────────────────── v1.3.1 Installed BufferedStreams ────────────────── v1.2.2 Installed Tullio ─────────────────────────── v0.3.9 Installed PrettyTables ───────────────────── v3.4.2 Installed Parsers ────────────────────────── v2.8.6 Installed BioGenerics ────────────────────── v0.1.5 Installed Tables ─────────────────────────── v1.13.0 Installed IfElse ─────────────────────────── v0.1.1 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Polyester ──────────────────────── v0.7.19 Installed PtrArrays ──────────────────────── v1.4.0 Installed OpenADMIXTURE ──────────────────── v0.1.0 Installed DataFrames ─────────────────────── v1.8.2 Installed SpecialFunctions ───────────────── v2.8.0 Installed Static ─────────────────────────── v1.4.4 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.5.2 Installed SortingAlgorithms ──────────────── v1.2.3 Installed SnpArrays ──────────────────────── v0.3.23 Installed WeakRefStrings ─────────────────── v1.4.3 Installed PooledArrays ───────────────────── v1.4.3 Installed JLLWrappers ────────────────────── v1.8.0 Installed TableTraits ────────────────────── v1.0.1 Installed Automa ─────────────────────────── v1.2.0 Installed Crayons ────────────────────────── v4.2.0 Installed ThreadingUtilities ─────────────── v0.5.6 Installed VariantCallFormat ──────────────── v0.5.9 Installed LaTeXStrings ───────────────────── v1.4.0 Installed XZ_jll ─────────────────────────── v5.8.3+0 Installed BGZFStreams ────────────────────── v0.3.2 Installed CodecXz ────────────────────────── v0.7.4 Installed DocStringExtensions ────────────── v0.9.5 Installed PolyesterWeave ─────────────────── v0.2.2 Installed UnPack ─────────────────────────── v1.0.2 Installed WorkerUtilities ────────────────── v1.6.1 Installing 4 artifacts Installed artifact OpenSpecFun 105.4 KiB Installed artifact Bzip2 152.8 KiB Installed artifact XZ 1018.2 KiB Installed artifact testfiles 4.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [425c031d] + OpenADMIXTURE v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [f70d9fcc] + CommonWorldInvalidations v1.1.1 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b552c78f] + DiffRules v1.16.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [48062228] + FilePathsBase v0.9.24 [59287772] + Formatting v0.4.3 [c27321d9] + Glob v1.5.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 [425c031d] + OpenADMIXTURE v0.1.0 [bac558e1] + OrderedCollections v2.0.1 [69de0a69] + Parsers v2.8.6 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.2.4 [91c51154] + SentinelArrays v1.4.10 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.3 [a6138be3] + SparseKmeansFeatureRanking v0.1.2 [276daf66] + SpecialFunctions v2.8.0 [aedffcd0] + Static v1.4.4 [0d7ed370] + StaticArrayInterface v1.10.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [7792a7ef] + StrideArraysCore v0.5.9 [892a3eda] + StringManipulation v0.4.6 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [8290d209] + ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [bc48ee85] + Tullio v0.3.9 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.8.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.2 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 0.8 s ✓ Glob 1.9 s ✓ Crayons 1.3 s ✓ InlineStrings 0.6 s ✓ ManualMemory 0.5 s ✓ Reexport 0.8 s ✓ Statistics 0.6 s ✓ DataAPI 0.5 s ✓ SciMLPublic 1.9 s ✓ IrrationalConstants 0.7 s ✓ UnPack 0.6 s ✓ CommonWorldInvalidations 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.0 s ✓ OrderedCollections 0.6 s ✓ InvertedIndices 0.8 s ✓ DocStringExtensions 0.7 s ✓ WorkerUtilities 1.3 s ✓ OffsetArrays 0.7 s ✓ BufferedStreams 0.4 s ✓ IfElse 0.5 s ✓ PtrArrays 0.5 s ✓ SIMDTypes 0.5 s ✓ IteratorInterfaceExtensions 0.8 s ✓ LaTeXStrings 0.8 s ✓ Requires 0.5 s ✓ Suppressor 0.9 s ✓ NaNMath 0.7 s ✓ DelimitedFiles 2.3 s ✓ ProgressMeter ┌ Warning: DEPRECATION NOTICE │ │ Formatting.jl has been unmaintained for a while, with some serious │ correctness bugs compromising the original purpose of the package. As a result, │ it has been deprecated - consider using an alternative, such as │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ If you are not using Formatting.jl as a direct dependency, please consider │ opening an issue on any packages you are using that do use it as a dependency. │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ package originally brings it in as a dependency. └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 1.2 s ✓ Formatting 1.5 s ✓ CpuId 2.0 s ✓ SentinelArrays 0.8 s ✓ Compat 1.5 s ✓ Preferences 1.9 s ✓ TranscodingStreams 1.4 s ✓ ThreadingUtilities 1.6 s ✓ Statistics → SparseArraysExt 0.6 s ✓ Missings 0.8 s ✓ PooledArrays 1.1 s ✓ Distances 4.1 s ✓ DataStructures 1.1 s ✓ LogExpFunctions 0.6 s ✓ AliasTables 0.7 s ✓ TableTraits 0.6 s ✓ Adapt 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.6 s ✓ JLLWrappers 1.0 s ✓ PrecompileTools 1.4 s ✓ BioGenerics 1.8 s ✓ CodecZstd 1.3 s ✓ CodecZlib 1.5 s ✓ Distances → DistancesSparseArraysExt 0.8 s ✓ SortingAlgorithms 1.5 s ✓ Tables 1.6 s ✓ ArrayInterface 0.5 s ✓ OffsetArrays → OffsetArraysAdaptExt 1.8 s ✓ FilePathsBase 2.0 s ✓ Bzip2_jll 1.3 s ✓ XZ_jll 1.1 s ✓ OpenSpecFun_jll 19.9 s ✓ Automa 6.5 s ✓ StringManipulation 10.5 s ✓ Parsers 2.6 s ✓ Static 1.4 s ✓ BGZFStreams 4.8 s ✓ StatsBase 2.4 s ✓ FilePathsBase → FilePathsBaseTestExt 0.8 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.9 s ✓ CodecBzip2 1.6 s ✓ CodecXz 5.4 s ✓ SpecialFunctions 45.2 s ✓ PrettyTables 0.8 s ✓ InlineStrings → ParsersExt 1.4 s ✓ BitTwiddlingConvenienceFunctions 2.6 s ✓ CPUSummary 4.0 s ✓ StaticArrayInterface [ Info: Compiling VCF parser... 16.0 s ✓ VariantCallFormat 1.1 s ✓ DiffRules 86.3 s ✓ DataFrames 2.3 s ✓ WeakRefStrings 3.0 s ✓ HostCPUFeatures 2.2 s ✓ PolyesterWeave 1.8 s ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 2.0 s ✓ CloseOpenIntervals 2.0 s ✓ LayoutPointers 4.8 s ✓ Tullio 24.1 s ✓ CSV julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [641] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x7aef465f9ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7aef46595394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:935:13 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x7aef46596249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6421941 (Pool: 6418533; Big: 3408); GC: 59 ✗ VectorizationBase 3.3 s ✓ StrideArraysCore ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:9 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:1 in expression starting at stdin:5 ✗ SLEEFPirates 2.9 s ✓ Polyester ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:32 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:1 in expression starting at stdin:5 ✗ LoopVectorization ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base module.jl:101 [11] top-level scope @ ~/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:3 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:1 in expression starting at stdin:5 ✗ LoopVectorization → SpecialFunctionsExt ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:6 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:3 in expression starting at stdin:5 ✗ SnpArrays ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 in expression starting at stdin:5 ✗ SparseKmeansFeatureRanking ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:2 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:1 in expression starting at stdin:5 ✗ OpenADMIXTURE 89 dependencies successfully precompiled in 369 seconds. 23 already precompiled. 9 dependencies had output during precompilation: ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ┌ SnpArrays │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:6 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:3 │ in expression starting at stdin:5 └ ┌ SLEEFPirates │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:9 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:1 │ in expression starting at stdin:5 └ ┌ SparseKmeansFeatureRanking │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 │ in expression starting at stdin:5 └ ┌ LoopVectorization → SpecialFunctionsExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:3 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:1 │ in expression starting at stdin:5 └ ┌ VectorizationBase │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [641] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x7aef465f9ebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x7aef46595394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:935:13 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x7aef46596249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6421941 (Pool: 6418533; Big: 3408); GC: 59 └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ┌ OpenADMIXTURE │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:2 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:1 │ in expression starting at stdin:5 └ ┌ LoopVectorization │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:32 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 7 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_2kLfeC" (ProcessExited(1)). SLEEFPirates Failed to precompile SLEEFPirates [476501e8-09a2-5ece-8869-fb82de89a1fa] to "/home/pkgeval/.julia/compiled/v1.14/SLEEFPirates/jl_A1b0Kq" (ProcessExited(1)). SparseKmeansFeatureRanking Failed to precompile SparseKmeansFeatureRanking [a6138be3-5d3e-4f3e-9009-7e37efc59f36] to "/home/pkgeval/.julia/compiled/v1.14/SparseKmeansFeatureRanking/jl_KdfAaP" (ProcessExited(1)). LoopVectorization → SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [327bd049-17b7-5451-ab24-3bea3d25b678] to "/home/pkgeval/.julia/compiled/v1.14/SpecialFunctionsExt/jl_fTkE0y" (ProcessExited(1)). VectorizationBase Failed to precompile VectorizationBase [3d5dd08c-fd9d-11e8-17fa-ed2836048c2f] to "/home/pkgeval/.julia/compiled/v1.14/VectorizationBase/jl_zxpJsZ" (ProcessSignaled(6)). OpenADMIXTURE Failed to precompile OpenADMIXTURE [425c031d-9e5b-441b-a07e-4acde9a966a3] to "/home/pkgeval/.julia/compiled/v1.14/OpenADMIXTURE/jl_80Gagv" (ProcessExited(1)). LoopVectorization Failed to precompile LoopVectorization [bdcacae8-1622-11e9-2a5c-532679323890] to "/home/pkgeval/.julia/compiled/v1.14/LoopVectorization/jl_KXkBZG" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 391.52s ################################################################################ # Testing # Testing OpenADMIXTURE Status `/tmp/jl_NqRJ3o/Project.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [59287772] Formatting v0.4.3 [bdcacae8] LoopVectorization v0.12.174 [425c031d] OpenADMIXTURE v0.1.0 [f517fe37] Polyester v0.7.19 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [4e780e97] SnpArrays v0.3.23 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [fd094767] Suppressor v0.2.8 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NqRJ3o/Manifest.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 ⌃ [4fba245c] ArrayInterface v7.7.1 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [f70d9fcc] CommonWorldInvalidations v1.1.1 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b552c78f] DiffRules v1.16.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [59287772] Formatting v0.4.3 [c27321d9] Glob v1.5.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 [425c031d] OpenADMIXTURE v0.1.0 [bac558e1] OrderedCollections v2.0.1 [69de0a69] Parsers v2.8.6 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [431bcebd] SciMLPublic v1.2.4 [91c51154] SentinelArrays v1.4.10 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.3 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.4 [0d7ed370] StaticArrayInterface v1.10.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [7792a7ef] StrideArraysCore v0.5.9 [892a3eda] StringManipulation v0.4.6 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [8290d209] ThreadingUtilities v0.5.6 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [bc48ee85] Tullio v0.3.9 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.8.3+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. [683] signal 6 (-6): Aborted in expression starting at none:0 unknown function (ip: 0x7c1345b34ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7c1345ad0394) at /lib/x86_64-linux-gnu/libc.so.6 __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] jl_object_in_image at /source/src/staticdata.c:210:22 needs_uniquing at /source/src/staticdata.c:422:5 jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 jl_insert_into_serialization_queue at /source/src/staticdata.c:935:13 jl_serialize_reachable at /source/src/staticdata.c:1050:13 jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] ijl_create_system_image at /source/src/staticdata.c:3473:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:276:9 jl_repl_entrypoint at /source/src/jlapi.c:1157:9 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x7c1345ad1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 6422319 (Pool: 6418911; Big: 3408); GC: 60 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:9 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:32 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base module.jl:101 [11] top-level scope @ ~/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:3 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:6 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] __require_prelocked(pkg::Base.PkgId, env::String) @ Base loading.jl:2891 [3] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base loading.jl:2739 [4] macro expansion @ loading.jl:2653 [inlined] [5] macro expansion @ lock.jl:376 [inlined] [6] __require(into::Module, mod::Symbol) @ Base loading.jl:2617 [7] require(into::Module, mod::Symbol) @ Base loading.jl:2593 [inlined] [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [9] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [10] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [11] top-level scope @ ~/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:2 [12] include(mod::Module, _path::String) @ Base Base.jl:329 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base loading.jl:3359 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/src/OpenADMIXTURE.jl:1 in expression starting at stdin:5 7 dependencies had output during precompilation: ┌ SnpArrays │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:6 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SnpArrays/UNmxR/src/SnpArrays.jl:3 │ in expression starting at stdin:5 └ ┌ SLEEFPirates │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:9 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SLEEFPirates/OTXBS/src/SLEEFPirates.jl:1 │ in expression starting at stdin:5 └ ┌ SparseKmeansFeatureRanking │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("4e780e97-f5bf-4111-9dc4-b70aaf691b06"), "SnpArrays") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1 │ in expression starting at stdin:5 └ ┌ LoopVectorization → SpecialFunctionsExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bdcacae8-1622-11e9-2a5c-532679323890"), "LoopVectorization") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:3 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/ext/SpecialFunctionsExt.jl:1 │ in expression starting at stdin:5 └ ┌ VectorizationBase │ julia: /source/src/staticdata.c:216: jl_object_in_image: Assertion `eyt_tree_is_in_range(&image_tree, (uintptr_t)obj) == in_image' failed. │ │ [683] signal 6 (-6): Aborted │ in expression starting at none:0 │ unknown function (ip: 0x7c1345b34ebc) at /lib/x86_64-linux-gnu/libc.so.6 │ gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x7c1345ad0394) at /lib/x86_64-linux-gnu/libc.so.6 │ __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ jl_object_in_image at /source/src/staticdata.c:216:5 [inlined] │ jl_object_in_image at /source/src/staticdata.c:210:22 │ needs_uniquing at /source/src/staticdata.c:422:5 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:606:45 │ jl_insert_into_serialization_queue at /source/src/staticdata.c:935:13 │ jl_serialize_reachable at /source/src/staticdata.c:1050:13 │ jl_save_system_image_to_stream at /source/src/staticdata.c:3098:9 [inlined] │ ijl_create_system_image at /source/src/staticdata.c:3473:5 │ ijl_write_compiler_output at /source/src/precompile.c:140:5 │ ijl_atexit_hook at /source/src/init.c:276:9 │ jl_repl_entrypoint at /source/src/jlapi.c:1157:9 │ main at /source/cli/loader_exe.c:117:15 │ unknown function (ip: 0x7c1345ad1249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ Allocations: 6422319 (Pool: 6418911; Big: 3408); GC: 60 └ ┌ OpenADMIXTURE │ [Output was shown above] └ ┌ LoopVectorization │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"), "VectorizationBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2891 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2739 │ [4] macro expansion │ @ loading.jl:2653 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2617 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2593 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:32 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:329 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3359 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/src/LoopVectorization.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 7 packages failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_0kA05h" (ProcessExited(1)). SLEEFPirates Failed to precompile SLEEFPirates [476501e8-09a2-5ece-8869-fb82de89a1fa] to "/home/pkgeval/.julia/compiled/v1.14/SLEEFPirates/jl_nQE1s2" (ProcessExited(1)). SparseKmeansFeatureRanking Failed to precompile SparseKmeansFeatureRanking [a6138be3-5d3e-4f3e-9009-7e37efc59f36] to "/home/pkgeval/.julia/compiled/v1.14/SparseKmeansFeatureRanking/jl_Q3RFUg" (ProcessExited(1)). LoopVectorization → SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [327bd049-17b7-5451-ab24-3bea3d25b678] to "/home/pkgeval/.julia/compiled/v1.14/SpecialFunctionsExt/jl_ye34cN" (ProcessExited(1)). VectorizationBase Failed to precompile VectorizationBase [3d5dd08c-fd9d-11e8-17fa-ed2836048c2f] to "/home/pkgeval/.julia/compiled/v1.14/VectorizationBase/jl_mUcb6r" (ProcessSignaled(6)). OpenADMIXTURE Failed to precompile OpenADMIXTURE [425c031d-9e5b-441b-a07e-4acde9a966a3] to "/home/pkgeval/.julia/compiled/v1.14/OpenADMIXTURE/jl_l3n5VY" (ProcessExited(1)). LoopVectorization Failed to precompile LoopVectorization [bdcacae8-1622-11e9-2a5c-532679323890] to "/home/pkgeval/.julia/compiled/v1.14/LoopVectorization/jl_3q7xvZ" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:1 Testing failed after 59.28s ERROR: LoadError: Package OpenADMIXTURE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 528.05s: package fails to precompile