Package evaluation to test SBMLImporter on Julia 1.14.0-DEV.2705 (2f35a920f0*) started at 2026-07-20T03:22:20.896 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.96s ################################################################################ # Installation # Installing SBMLImporter... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [210efffb] + SBMLImporter v4.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.2 [14f7f29c] + AMD v0.5.3 [6e696c72] + AbstractPlutoDingetjes v1.4.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.27.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [e2ed5e7c] + Bijections v0.2.2 [b2a6c25c] + BinaryHeaps v1.0.3 [caf10ac8] + BipartiteGraphs v0.1.9 [8e7c35d0] + BlockArrays v1.9.5 [70df07ce] + BracketingNonlinearSolve v1.12.3 [479239e8] + Catalyst v16.2.2 [d360d2e6] + ChainRulesCore v1.26.1 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.11 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.1.1 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.42 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.6 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.6 [2b5f629d] + DiffEqBase v7.6.2 [459566f4] + DiffEqCallbacks v4.18.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.20 [8d63f2c5] + DispatchDoctor v0.4.28 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.8.1 [7c1d4256] + DynamicPolynomials v0.6.6 [06fc5a27] + DynamicQuantities v1.13.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.21 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.3.4 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.4 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v3.2.0 [6a86dc24] + FiniteDiff v2.32.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.4.1 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.10.1 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [615f187c] + IfElse v0.1.1 [3263718b] + ImplicitDiscreteSolve v2.1.3 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.29.2 [ba0b0d4f] + Krylov v0.10.8 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.11 [87fe0de2] + LineSearch v0.1.12 [7ed4a6bd] + LinearSolve v5.0.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [bb5d69b7] + MaybeInplace v0.1.6 [7771a370] + ModelingToolkitBase v1.54.1 [2e0e35c7] + Moshi v0.3.12 [46d2c3a1] + MuladdMacro v0.2.6 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.4 [be0214bd] + NonlinearSolveBase v2.35.0 [5959db7a] + NonlinearSolveFirstOrder v2.2.1 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [bbf590c4] + OrdinaryDiffEqCore v4.7.1 [d96e819e] + Parameters v0.13.1 [e409e4f3] + PoissonRandom v0.4.12 [d236fae5] + PreallocationTools v1.3.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [0c0d3e7f] + PureKLU v1.1.1 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.22 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v4.1.0 [9dfe8606] + SCCNonlinearSolve v1.13.3 [0bca4576] + SciMLBase v3.36.0 [19f34311] + SciMLJacobianOperators v0.1.16 [a6db7da4] + SciMLLogging v2.0.3 [c0aeaf25] + SciMLOperators v1.24.3 [431bcebd] + SciMLPublic v1.2.3 [53ae85a6] + SciMLStructures v1.10.3 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.13.0 [699a6c99] + SimpleTraits v0.9.6 [a57abbd0] + SparseColumnPivotedQR v2.1.4 [276daf66] + SpecialFunctions v2.8.0 [0c0c59c1] + StarAlgebras v0.3.0 [aedffcd0] + Static v1.4.4 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [2efcf032] + SymbolicIndexingInterface v0.3.51 [19f23fe9] + SymbolicLimits v1.1.4 [d1185830] + SymbolicUtils v4.40.2 [0c5d862f] + Symbolics v7.32.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [d30d5f5c] + WeakCacheSets v0.1.0 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [bb12108a] + SBML_jll v5.21.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.103+0 [14a3606d] + MozillaCACerts_jll v2026.7.16 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 5.5 s ✓ DiffEqCallbacks → DiffEqCallbacksFunctorsExt 126.6 s ✓ SBMLImporter 51.9 s ✓ SBMLImporter → SBMLImporterForwardDiffExt 3 dependencies successfully precompiled in 191 seconds. 351 already precompiled. Precompilation completed after 217.93s ################################################################################ # Testing # Testing SBMLImporter Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_DLIjWm/Project.toml` [4c88cf16] + Aqua v0.8.16 [336ed68f] + CSV v0.10.16 [a93c6f00] + DataFrames v1.8.2 [961ee093] + ModelingToolkit v11.34.1 [6ad6398a] + OrdinaryDiffEqBDF v2.3.1 [43230ef6] + OrdinaryDiffEqRosenbrock v2.4.1 [210efffb] + SBMLImporter v4.1.0 [1bc83da4] + SafeTestsets v0.1.0 Updating `/tmp/jl_DLIjWm/Manifest.toml` [4c88cf16] + Aqua v0.8.16 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [e2d170a0] + DataValueInterfaces v1.0.0 [48062228] + FilePathsBase v0.9.24 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 ⌅ [7ed4a6bd] ↓ LinearSolve v5.0.0 ⇒ v4.3.0 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v11.34.1 [6bb917b9] + ModelingToolkitTearing v1.19.3 [8913a72c] + NonlinearSolve v4.21.1 ⌃ [5959db7a] ↓ NonlinearSolveFirstOrder v2.2.1 ⇒ v2.2.0 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.14.0 [26075421] + NonlinearSolveSpectralMethods v1.7.3 [6ad6398a] + OrdinaryDiffEqBDF v2.3.1 [4302a76b] + OrdinaryDiffEqDifferentiation v3.3.1 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v2.3.0 [43230ef6] + OrdinaryDiffEqRosenbrock v2.4.1 [b4bd8bb3] + OrdinaryDiffEqRosenbrockTableaus v2.2.1 [2d112036] + OrdinaryDiffEqSDIRK v2.8.1 [69de0a69] + Parsers v2.8.6 [2dfb63ee] + PooledArrays v1.4.3 [08abe8d2] + PrettyTables v3.4.2 [210efffb] + SBMLImporter v4.1.0 [1bc83da4] + SafeTestsets v0.1.0 [91c51154] + SentinelArrays v1.4.10 [a2af1166] + SortingAlgorithms v1.2.3 [0a514795] + SparseMatrixColorings v0.4.27 [64909d44] + StateSelection v1.11.0 [892a3eda] + StringManipulation v0.4.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [a63ad114] + Mmap v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_DLIjWm/Project.toml` [4c88cf16] Aqua v0.8.16 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.2.2 [b0b7db55] ComponentArrays v0.15.42 [a93c6f00] DataFrames v1.8.2 [2b5f629d] DiffEqBase v7.6.2 [ccbc3e58] JumpProcesses v9.29.2 [961ee093] ModelingToolkit v11.34.1 [7771a370] ModelingToolkitBase v1.54.1 [6ad6398a] OrdinaryDiffEqBDF v2.3.1 [43230ef6] OrdinaryDiffEqRosenbrock v2.4.1 [aea7be01] PrecompileTools v1.3.4 [7e49a35a] RuntimeGeneratedFunctions v0.5.22 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v4.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v3.36.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.8.0 [0c5d862f] Symbolics v7.32.1 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DLIjWm/Manifest.toml` [47edcb42] ADTypes v1.22.2 [14f7f29c] AMD v0.5.3 [6e696c72] AbstractPlutoDingetjes v1.4.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [4c88cf16] Aqua v0.8.16 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.27.0 [4c555306] ArrayLayouts v1.12.2 [aae01518] BandedMatrices v1.11.0 [e2ed5e7c] Bijections v0.2.2 [b2a6c25c] BinaryHeaps v1.0.3 [caf10ac8] BipartiteGraphs v0.1.9 [8e7c35d0] BlockArrays v1.9.5 [70df07ce] BracketingNonlinearSolve v1.12.3 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.2.2 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.11 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.1.1 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.42 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.6 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v7.6.2 [459566f4] DiffEqCallbacks v4.18.3 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.20 [8d63f2c5] DispatchDoctor v0.4.28 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.8.1 [7c1d4256] DynamicPolynomials v0.6.6 [06fc5a27] DynamicQuantities v1.13.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.21 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v1.3.4 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.3.4 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v3.2.0 [6a86dc24] FiniteDiff v2.32.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.4.1 [a85aefff] FunctionMaps v0.1.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.10.1 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.14.0 [615f187c] IfElse v0.1.1 [3263718b] ImplicitDiscreteSolve v2.1.3 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.29.2 [ba0b0d4f] Krylov v0.10.8 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.11 [87fe0de2] LineSearch v0.1.12 ⌅ [7ed4a6bd] LinearSolve v4.3.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [bb5d69b7] MaybeInplace v0.1.6 [e1d29d7a] Missings v1.2.0 [961ee093] ModelingToolkit v11.34.1 [7771a370] ModelingToolkitBase v1.54.1 [6bb917b9] ModelingToolkitTearing v1.19.3 [2e0e35c7] Moshi v0.3.12 [46d2c3a1] MuladdMacro v0.2.6 [102ac46a] MultivariatePolynomials v0.5.19 [d8a4904e] MutableArithmetics v1.8.0 [77ba4419] NaNMath v1.1.4 [8913a72c] NonlinearSolve v4.21.1 [be0214bd] NonlinearSolveBase v2.35.0 ⌃ [5959db7a] NonlinearSolveFirstOrder v2.2.0 ⌃ [9a2c21bd] NonlinearSolveQuasiNewton v1.14.0 [26075421] NonlinearSolveSpectralMethods v1.7.3 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [6ad6398a] OrdinaryDiffEqBDF v2.3.1 [bbf590c4] OrdinaryDiffEqCore v4.7.1 [4302a76b] OrdinaryDiffEqDifferentiation v3.3.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v2.3.0 [43230ef6] OrdinaryDiffEqRosenbrock v2.4.1 [b4bd8bb3] OrdinaryDiffEqRosenbrockTableaus v2.2.1 [2d112036] OrdinaryDiffEqSDIRK v2.8.1 [d96e819e] Parameters v0.13.1 [69de0a69] Parsers v2.8.6 [e409e4f3] PoissonRandom v0.4.12 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v1.3.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.2 [27ebfcd6] Primes v0.5.7 [0c0d3e7f] PureKLU v1.1.1 [988b38a3] ReadOnlyArrays v0.2.0 [795d4caa] ReadOnlyDicts v1.0.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v4.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.22 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v4.1.0 [9dfe8606] SCCNonlinearSolve v1.13.3 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v3.36.0 [19f34311] SciMLJacobianOperators v0.1.16 [a6db7da4] SciMLLogging v2.0.3 [c0aeaf25] SciMLOperators v1.24.3 [431bcebd] SciMLPublic v1.2.3 [53ae85a6] SciMLStructures v1.10.3 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.13.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.3 [a57abbd0] SparseColumnPivotedQR v2.1.4 [0a514795] SparseMatrixColorings v0.4.27 [276daf66] SpecialFunctions v2.8.0 [0c0c59c1] StarAlgebras v0.3.0 [64909d44] StateSelection v1.11.0 [aedffcd0] Static v1.4.4 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.5 [2efcf032] SymbolicIndexingInterface v0.3.51 [19f23fe9] SymbolicLimits v1.1.4 [d1185830] 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OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Aqua Quality Check | 10 10 9m42.1s Currated jump simulation test: Test Failed at /home/pkgeval/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:28 Expression: isequal((reactions(rn_sbml))[2], (reactions(rn_catalyst))[4]) Evaluated: isequal(C / (1//2), Y + 2*X --> 3*X, C, X --> ∅) Stacktrace: [1] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:560 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [4] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:10 [inlined] [7] eval(m::Module, e::Any) @ Core boot.jl:545 [8] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:28 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core boot.jl:545 [12] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [13] _start() @ Base client.jl:596 Currated jump simulation test: Test Failed at /home/pkgeval/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:38 Expression: jprob_sbml.massaction_jump.reactant_stoch == jprob_catalyst.massaction_jump.reactant_stoch[imap] Evaluated: [Pair{Int64, Int64}[], [1 => 1, 2 => 2], [2 => 1], [2 => 1]] == [Pair{Int64, Int64}[], [2 => 1], [1 => 1, 2 => 2], [2 => 1]] Stacktrace: [1] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:560 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [4] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:10 [inlined] [7] eval(m::Module, e::Any) @ Core boot.jl:545 [8] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:28 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core boot.jl:545 [12] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [13] _start() @ Base client.jl:596 Currated jump simulation test: Test Failed at /home/pkgeval/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:39 Expression: jprob_sbml.massaction_jump.net_stoch == jprob_catalyst.massaction_jump.net_stoch[imap] Evaluated: [[2 => 1], [1 => -1, 2 => 1], [2 => -1], [1 => 1, 2 => -1]] == [[2 => 1], [2 => -1], [1 => -1, 2 => 1], [1 => 1, 2 => -1]] Stacktrace: [1] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/curated_jump_test.jl:560 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [4] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:10 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:10 [inlined] [7] eval(m::Module, e::Any) @ Core boot.jl:545 [8] top-level scope @ ~/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:28 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core boot.jl:545 [12] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [13] _start() @ Base client.jl:596 Test Summary: | Pass Fail Total Time Currated jump simulation test | 6 3 9 8m55.1s RNG of the outermost testset: Random.Xoshiro(0x592aaeb7351e590e, 0x918bd92334d5417f, 0x0ba591cbd150884f, 0xc789fe1ec6598bb5, 0xbcd005f356a39909) ERROR: LoadError: Some tests did not pass: 6 passed, 3 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/6GSIW/test/runtests.jl:9 Testing failed after 1128.79s ERROR: LoadError: Package SBMLImporter errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1417.27s: package has test failures