Package evaluation to test Decapodes on Julia 1.14.0-DEV.2637 (b1f508acef*) started at 2026-07-20T03:50:54.368 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.4s ################################################################################ # Installation # Installing Decapodes... Resolving package versions... ┌ Warning: Downloaded package content does not match expected hash (git-tree-sha1); skipping this source │ package = "ACSets" │ url = "https://api.github.com/repos/AlgebraicJulia/ACSets.jl/tarball/068cdacaaf8f252596322521cc4808ab1f94ff8f" │ expected = SHA1("068cdacaaf8f252596322521cc4808ab1f94ff8f") │ computed = 20-element Vector{UInt8}: … └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1247 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.29 Updating `~/.julia/environments/v1.14/Project.toml` [679ab3ea] + Decapodes v0.6.9 Updating `~/.julia/environments/v1.14/Manifest.toml` [227ef7b5] + ACSets v0.2.29 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.27.0 [4c555306] 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To see why use `status --outdated -m` Installation completed after 7.26s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 40.6 s ✓ ACSets 8.5 s ✓ SciMLBase → SciMLBaseDistributionsExt 10.4 s ✓ DocumenterCitations 31.2 s ✓ DiffEqBase → DiffEqBaseCUDAExt 210.5 s ✓ Catlab WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import. NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Decapode end`. Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import. NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`. Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import. NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Term end`. Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import. NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Equation end`. Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import. NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Term end`. Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. 69.0 s ✓ DiagrammaticEquations 63.0 s ✓ CombinatorialSpaces 42.3 s ✓ CombinatorialSpaces → CombinatorialSpacesCUDAExt 54.1 s ✓ Decapodes 52.8 s ✓ Decapodes → DecapodesCUDAExt 10 dependencies successfully precompiled in 590 seconds. 394 already precompiled. 1 dependency had output during precompilation: ┌ DiagrammaticEquations │ WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Decapode end`. │ Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. │ WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`. │ Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. │ WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. │ WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Equation end`. │ Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. │ WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. └ Precompilation completed after 615.76s ################################################################################ # Testing # Testing Decapodes Status `/tmp/jl_UaCMQC/Project.toml` [227ef7b5] ACSets v0.2.29 [4c88cf16] Aqua v0.8.16 [052768ef] CUDA v6.2.1 [134e5e36] Catlab v0.17.6 [b1c52339] CombinatorialSpaces v0.10.1 [b0b7db55] ComponentArrays v0.15.42 [679ab3ea] Decapodes v0.6.9 [6f00c28b] DiagrammaticEquations v0.2.7 [31c24e10] Distributions v0.25.129 [daee34ce] DocumenterCitations v1.4.1 [f6369f11] ForwardDiff v1.4.1 [5c1252a2] GeometryBasics v0.5.11 ⌅ [682c06a0] JSON v0.21.4 [ba0b0d4f] Krylov v0.10.8 [d8e11817] MLStyle v0.4.17 [77ba4419] NaNMath v1.1.4 ⌅ [5b33eab2] OrdinaryDiffEqPRK v1.10.0 ⌅ [2d112036] OrdinaryDiffEqSDIRK v1.14.0 ⌅ [b1df2697] OrdinaryDiffEqTsit5 v1.12.0 [d236fae5] PreallocationTools v1.3.0 ⌅ [0bca4576] SciMLBase v2.155.1 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.14.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UaCMQC/Manifest.toml` [227ef7b5] ACSets v0.2.29 [47edcb42] ADTypes v1.22.2 [14f7f29c] AMD v0.5.3 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [4fba245c] ArrayInterface v7.27.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.3 [ab4f0b2a] BFloat16s v0.6.1 [2027ae74] BibInternal v0.3.8 [13533e5b] BibParser v0.2.4 [f1be7e48] Bibliography v0.3.1 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [70df07ce] BracketingNonlinearSolve v1.12.1 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [052768ef] CUDA v6.2.1 [bd0ed864] CUDACore v6.2.1 [9ec180c6] CUDATools v6.2.1 [1af6417a] CUDA_Runtime_Discovery v2.1.0 [9e67e8f6] CUPTI v6.2.1 [134e5e36] Catlab v0.17.6 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [b1c52339] CombinatorialSpaces v0.10.1 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.11 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.1.1 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.42 [a81c6b42] Compose v0.9.7 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.6 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Executing tests with 1 threads. Test Summary: | Pass Total Time ComponentArrays.jl Integration | 2 2 3m58.3s ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1061 └ @ DiagrammaticEquations ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1061 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1067 └ @ DiagrammaticEquations ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1067 ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1075 └ @ DiagrammaticEquations ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1075 Test Summary: | Pass Total Time Simulation Core | 330 330 57.9s Test Summary: | Pass Total Time Open Operators | 18 18 15.1s Test Summary: | Pass Total Time Simulation | 79 79 10m44.2s ┌ Info: CUDA tests were not run, since CUDA.functional() is false. └ reason = "unknown reason" Test Summary: | Pass Total Time Code Quality (Aqua.jl) | 11 11 3m42.4s Testing Decapodes tests passed Testing completed after 1230.37s PkgEval succeeded after 1922.41s