Package evaluation to test ConstraintTrees on Julia 1.14.0-DEV.2705 (2f35a920f0*) started at 2026-07-19T12:40:04.539 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.79s ################################################################################ # Installation # Installing ConstraintTrees... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5515826b] + ConstraintTrees v1.11.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [5515826b] + ConstraintTrees v1.11.1 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.6 [ffbed154] + DocStringExtensions v0.9.5 [bac558e1] + OrderedCollections v2.0.1 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 4.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 2.2 s ✓ GenericLinearAlgebra 3.0 s ✓ ConstraintTrees 1.9 s ✓ SnoopPrecompile 2.4 s ✓ METIS_jll 1.2 s ✓ Ncurses_jll 1.1 s ✓ ASL_jll 1.2 s ✓ bliss_jll 1.8 s ✓ SBML_jll 141.9 s ✓ Clarabel 1.4 s ✓ MUMPS_seq_jll 1.2 s ✓ SPRAL_jll 1.0 s ✓ Readline_jll 15.6 s ✓ SBML 1.8 s ✓ Ipopt_jll 1.2 s ✓ SCIP_jll 5.0 s ✓ SCIP_PaPILO_jll 24.6 s ✓ SCIP 17 dependencies successfully precompiled in 209 seconds. 101 already precompiled. Precompilation completed after 239.81s ################################################################################ # Testing # Testing ConstraintTrees Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_Us5cpa/Project.toml` [7d9f7c33] + Accessors v0.1.45 [61c947e1] + Clarabel v0.11.1 [60bf3e95] + GLPK v1.2.1 [682c06a0] + JSON v1.6.1 [4076af6c] + JuMP v1.30.1 [e5567a89] + SBML v1.6.0 [82193955] + SCIP v0.12.8 [f43a241f] ~ Downloads ⇒ v1.7.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_Us5cpa/Manifest.toml` [14f7f29c] + AMD v0.5.3 [7d9f7c33] + Accessors v0.1.45 [61c947e1] + Clarabel v0.11.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [a33af91c] + CompositionsBase v0.1.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [e2ba6199] + ExprTools v0.1.10 [f6369f11] + ForwardDiff v1.4.1 [60bf3e95] + GLPK v1.2.1 ⌅ [14197337] + GenericLinearAlgebra v0.3.19 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [4076af6c] + JuMP v1.30.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.51.2 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] ↓ OrderedCollections v2.0.1 ⇒ v1.8.2 [69de0a69] + Parsers v2.8.6 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [bfc457fd] + QDLDL v0.4.1 [e5567a89] + SBML v1.6.0 [82193955] + SCIP v0.12.8 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [ec057cc2] + StructUtils v2.8.2 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [e8aa6df9] + GLPK_jll v5.0.1+1 [e33a78d0] + Hwloc_jll v2.14.0+0 ⌅ [9cc047cb] + Ipopt_jll v300.1400.1900+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [68e3532b] + Ncurses_jll v6.6.0+2 [656ef2d0] + OpenBLAS32_jll v0.3.33+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [05236dd9] + Readline_jll v8.3.3+0 [bb12108a] + SBML_jll v5.21.0+0 [fc9abe76] + SCIP_PaPILO_jll v1000.0.300+0 [e5ac4fe4] + SCIP_jll v1000.0.300+0 ⌅ [319450e9] + SPRAL_jll v2025.5.20+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [508c9074] + bliss_jll v0.77.0+1 [28df3c45] + boost_jll v1.87.0+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.2.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] ~ Downloads ⇒ v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.103+0 [3a97d323] + MPFR_jll v4.2.2+0 [14a3606d] + MozillaCACerts_jll v2026.7.16 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Us5cpa/Project.toml` [7d9f7c33] Accessors v0.1.45 [61c947e1] Clarabel v0.11.1 [5515826b] ConstraintTrees v1.11.1 [60bf3e95] GLPK v1.2.1 [682c06a0] JSON v1.6.1 [4076af6c] JuMP v1.30.1 [e5567a89] SBML v1.6.0 [82193955] SCIP v0.12.8 [f43a241f] Downloads v1.7.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Us5cpa/Manifest.toml` [14f7f29c] AMD v0.5.3 [7d9f7c33] Accessors v0.1.45 [61c947e1] Clarabel v0.11.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [a33af91c] CompositionsBase v0.1.2 [5515826b] ConstraintTrees v1.11.1 [187b0558] ConstructionBase v1.6.0 [864edb3b] DataStructures v0.19.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.4.1 [60bf3e95] GLPK v1.2.1 ⌅ [14197337] GenericLinearAlgebra v0.3.19 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [4076af6c] JuMP v1.30.1 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.51.2 [d8a4904e] MutableArithmetics v1.8.0 [77ba4419] NaNMath v1.1.4 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [bfc457fd] QDLDL v0.4.1 [e5567a89] SBML v1.6.0 [82193955] SCIP v0.12.8 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [ec057cc2] StructUtils v2.8.2 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [e8aa6df9] GLPK_jll v5.0.1+1 [e33a78d0] Hwloc_jll v2.14.0+0 ⌅ [9cc047cb] Ipopt_jll v300.1400.1900+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [68e3532b] Ncurses_jll v6.6.0+2 [656ef2d0] OpenBLAS32_jll v0.3.33+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [05236dd9] Readline_jll v8.3.3+0 [bb12108a] SBML_jll v5.21.0+0 [fc9abe76] SCIP_PaPILO_jll v1000.0.300+0 [e5ac4fe4] SCIP_jll v1000.0.300+0 ⌅ [319450e9] SPRAL_jll v2025.5.20+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [508c9074] bliss_jll v0.77.0+1 [28df3c45] boost_jll v1.87.0+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.103+0 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2026.7.16 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition default_pretty_output_io() in module ConstraintTrees at /home/pkgeval/.julia/packages/ConstraintTrees/WXXYD/src/pretty.jl:65 overwritten in module Main at /home/pkgeval/.julia/packages/ConstraintTrees/WXXYD/test/runtests.jl:23. Metabolic modeling: Test Failed at /home/pkgeval/.julia/packages/ConstraintTrees/WXXYD/docs/src/1-metabolic-modeling.jl:482 Expression: c.community.species1.handicap.value.idxs == [49] Evaluated: [70] == [49] Stacktrace: [1] top-level scope @ ~/.julia/packages/ConstraintTrees/WXXYD/docs/src/1-metabolic-modeling.jl:560 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [4] top-level scope @ ~/.julia/packages/ConstraintTrees/WXXYD/test/runtests.jl:22 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/ConstraintTrees/WXXYD/test/runtests.jl:26 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [8] macro expansion @ ~/.julia/packages/ConstraintTrees/WXXYD/test/runtests.jl:26 [inlined] Test Summary: | Pass Fail Total Time ConstraintTrees tests | 141 1 142 7m53.1s Metabolic modeling | 17 1 18 2m39.8s Quadratic optimization | 7 7 3m24.7s Mixed-integer optimization | 5 5 32.3s Functional tree processing | 31 31 35.7s JuMP integration improvements | 5 5 0.7s Serialization | 1 1 28.3s Miscellaneous methods | 74 74 11.6s RNG of the outermost testset: Random.Xoshiro(0xbded8401a5d63705, 0x875e9542ea396541, 0x76139a7d25e9c04d, 0xa4dba4e51b277f8c, 0x246cca7fe027a51d) ERROR: LoadError: Some tests did not pass: 141 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ConstraintTrees/WXXYD/test/runtests.jl:19 Testing failed after 488.74s ERROR: LoadError: Package ConstraintTrees errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 790.55s: package has test failures