Package evaluation to test DelayEmbeddings on Julia 1.14.0-DEV.2637 (b1f508acef*) started at 2026-07-12T19:35:26.518 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.47s ################################################################################ # Installation # Installing DelayEmbeddings... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5732040d] + DelayEmbeddings v2.9.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 [38540f10] + CommonSolve v0.2.11 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [5732040d] + DelayEmbeddings v2.9.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.129 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [a0844989] + Gamma v1.1.0 [34004b35] + HypergeometricFunctions v0.3.29 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.28 [645ca80c] + Neighborhood v0.2.5 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.40 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.4 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [40b095a5] + StateSpaceSets v2.5.5 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.7 s ✓ Neighborhood 1.5 s ✓ StochasticDiffEqLevyArea 7.7 s ✓ DiffEqNoiseProcess 8.3 s ✓ JumpProcesses 3.2 s ✓ StateSpaceSets 7.2 s ✓ JumpProcesses → JumpProcessesOrdinaryDiffEqCoreExt 7.0 s ✓ DelayEmbeddings 10.0 s ✓ StochasticDiffEqCore 9.9 s ✓ StochasticDiffEqHighOrder WARNING: Imported binding SciMLBase.recursivecopy was undeclared at import time during import to DynamicalSystemsBase. 11.4 s ✓ DynamicalSystemsBase 10 dependencies successfully precompiled in 73 seconds. 186 already precompiled. 1 dependency had output during precompilation: ┌ DynamicalSystemsBase │ WARNING: Imported binding SciMLBase.recursivecopy was undeclared at import time during import to DynamicalSystemsBase. └ Precompilation completed after 94.18s ################################################################################ # Testing # Testing DelayEmbeddings Status `/tmp/jl_bkAJst/Project.toml` [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [6e36e845] DynamicalSystemsBase v3.19.1 [f43a241f] Downloads v1.7.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bkAJst/Manifest.toml` [47edcb42] ADTypes v1.22.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.27.0 [b2a6c25c] BinaryHeaps v1.0.3 [70df07ce] BracketingNonlinearSolve v1.12.2 [38540f10] CommonSolve v0.2.11 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.6 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v7.6.1 [459566f4] DiffEqCallbacks v4.18.3 [77a26b50] DiffEqNoiseProcess v5.33.2 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.20 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.129 [ffbed154] DocStringExtensions v0.9.5 [6e36e845] DynamicalSystemsBase v3.19.1 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.21 [e2ba6199] ExprTools v0.1.10 [7034ab61] FastBroadcast v1.3.4 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.3.4 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v3.0.3 [6a86dc24] FiniteDiff v2.32.0 [f6369f11] ForwardDiff v1.4.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.10.1 [46192b85] GPUArraysCore v0.2.0 [a0844989] Gamma v1.1.0 [86223c79] Graphs v1.14.0 [34004b35] HypergeometricFunctions v0.3.29 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [ccbc3e58] JumpProcesses v9.29.1 [87fe0de2] LineSearch v0.1.12 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [bb5d69b7] MaybeInplace v0.1.6 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.6 [77ba4419] NaNMath v1.1.4 [b8a86587] NearestNeighbors v0.4.28 [645ca80c] Neighborhood v0.2.5 [be0214bd] NonlinearSolveBase v2.33.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [bbf590c4] OrdinaryDiffEqCore v4.6.0 [b1df2697] OrdinaryDiffEqTsit5 v2.0.2 [90014a1f] PDMats v0.11.40 [e409e4f3] PoissonRandom v0.4.12 [d236fae5] PreallocationTools v1.3.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v4.3.3 [189a3867] Reexport v1.2.2 [ae5879a3] ResettableStacks v1.2.3 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.4 [7e49a35a] RuntimeGeneratedFunctions v0.5.22 [0bca4576] SciMLBase v3.35.1 [19f34311] SciMLJacobianOperators v0.1.14 [a6db7da4] SciMLLogging v2.0.3 [c0aeaf25] SciMLOperators v1.24.0 [431bcebd] SciMLPublic v1.2.2 [53ae85a6] SciMLStructures v1.10.2 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.12.1 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [40b095a5] StateSpaceSets v2.5.5 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [19c5a474] StochasticDiffEqCore v2.0.2 [0520c28c] StochasticDiffEqHighOrder v2.1.1 [90dbc90e] StochasticDiffEqLevyArea v2.0.1 [2efcf032] SymbolicIndexingInterface v0.3.51 [a759f4b9] TimerOutputs v0.5.29 [781d530d] TruncatedStacktraces v1.4.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] LibCURL_jll v8.21.0+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... running test file embedding_tests.jl running test file separated/delaytime_test.jl Estimate Delay: Error During Test at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:9 Got exception outside of a @test UndefVarError: `recursivecopy` not defined in `DynamicalSystemsBase` Suggestion: this global was defined as `SciMLBase.recursivecopy` but not assigned a value. Hint: a global variable of this name also exists in RecursiveArrayTools. Stacktrace: [1] DeterministicIteratedMap(f::var"#henon_rule#henon_rule##0", u0::Vector{Float64}, p::Vector{Float64}; t0::Int64) @ DynamicalSystemsBase ~/.julia/packages/DynamicalSystemsBase/Z7oCo/src/core_systems/discrete_time_map.jl:48 [2] DeterministicIteratedMap(f::Function, u0::Vector{Float64}, p::Vector{Float64}) @ DynamicalSystemsBase ~/.julia/packages/DynamicalSystemsBase/Z7oCo/src/core_systems/discrete_time_map.jl:41 [3] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:11 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/separated/delaytime_test.jl:17 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [7] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [9] testfile(file::String, testname::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:6 [10] testfile(file::String) @ Main ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:5 [11] top-level scope @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:28 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [13] macro expansion @ ~/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:29 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core boot.jl:545 [17] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [18] _start() @ Base client.jl:596 running test file separated/embedding_dimension_test.jl Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Stochastic signal, valid embedding NOT achieved ⨉. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to increasing FNNs. Double-check the FNN-statistic. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to increasing FNNs. Double-check the FNN-statistic. running test file unified/test_pecora.jl running test file unified/uzal_cost_test.jl Testing uzal_cost.jl... running test file unified/test_pecuzal_embedding.jl Testing pecuzal_method.jl... Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 29.925810 seconds (41.45 M allocations: 3.512 GiB, 3.78% gc time, 71.98% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 14.620550 seconds (18.77 M allocations: 1.627 GiB, 3.56% gc time, 69.07% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 11.340342 seconds (48.98 M allocations: 4.339 GiB, 8.66% gc time, 0.35% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 37.490414 seconds (147.94 M allocations: 11.437 GiB, 6.07% gc time, 17.50% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 23.848206 seconds (74.35 M allocations: 5.784 GiB, 6.36% gc time, 29.23% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 25.816710 seconds (122.31 M allocations: 9.069 GiB, 6.59% gc time, 2.59% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Algorithm stopped due to increasing L-values in the first embedding cycle. Valid embedding NOT achieved ⨉. 4.762977 seconds (4.79 M allocations: 781.425 MiB, 6.10% gc time, 54.45% compilation time) running test file unified/test_garcia.jl Testing garcia_almeida.jl... Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. running test file unified/mdop_tests.jl Testing mdop_embedding.jl... Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Test Summary: | Pass Error Total Time DelayEmbeddings tests | 188 1 189 9m24.3s Embedding tests | 51 51 12.7s Delaytime test | 2 1 3 12.3s Estimate Delay | 2 1 3 8.0s Embedding dimension test | 12 12 1m48.4s Test pecora | 11 11 42.9s Uzal cost test | 21 21 21.8s Test pecuzal embedding | 45 45 2m33.8s Test garcia | 25 25 2m13.2s Mdop tests | 21 21 1m18.4s RNG of the outermost testset: Xoshiro(0x092482a935aa5036, 0x24381ec090229544, 0x988ef83989f1cb93, 0xd9fba40696c140d5, 0x66793438b713cfb4) ERROR: LoadError: Some tests did not pass: 188 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DelayEmbeddings/AV1Ee/test/runtests.jl:27 Testing failed after 588.06s ERROR: LoadError: Package DelayEmbeddings errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 747.88s: package tests unexpectedly errored