Package evaluation to test VCFTools on Julia 1.14.0-DEV.2468 (92be8bc088*) started at 2026-07-02T20:13:38.859 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.6s ################################################################################ # Installation # Installing VCFTools... Resolving package versions... Installed CommonSolve ───────────── v0.2.9 Installed DataStructures ────────── v0.19.5 Installed Rmath_jll ─────────────── v0.5.1+0 Installed FillArrays ────────────── v1.16.0 Installed CompositionsBase ──────── v0.1.2 Installed StatsBase ─────────────── v0.34.12 Installed HypergeometricFunctions ─ v0.3.28 Installed ConstructionBase ──────── v1.6.0 Installed CodecZlib ─────────────── v0.7.8 Installed OrderedCollections ────── v1.8.2 Installed AliasTables ───────────── v1.1.3 Installed TranscodingStreams ────── v0.11.3 Installed DataAPI ───────────────── v1.16.0 Installed HypothesisTests ───────── v0.11.8 Installed Combinatorics ─────────── v1.1.0 Installed Statistics ────────────── v1.11.1 Installed ProgressMeter ─────────── v1.11.0 Installed IrrationalConstants ───── v0.2.6 Installed QuadGK ────────────────── v2.11.3 Installed LogExpFunctions ───────── v1.0.1 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed Distributions ─────────── v0.25.129 Installed Roots ─────────────────── v3.0.0 Installed Rmath ─────────────────── v0.9.0 Installed BioGenerics ───────────── v0.1.5 Installed StatsFuns ─────────────── v2.2.0 Installed BufferedStreams ───────── v1.2.2 Installed SpecialFunctions ──────── v2.8.0 Installed Reexport ──────────────── v1.2.2 Installed InverseFunctions ──────── v0.1.17 Installed Preferences ───────────── v1.5.2 Installed Missings ──────────────── v1.2.0 Installed SortingAlgorithms ─────── v1.2.3 Installed JLLWrappers ───────────── v1.8.0 Installed PDMats ────────────────── v0.11.40 Installed Automa ────────────────── v1.2.0 Installed PrecompileTools ───────── v1.3.4 Installed BGZFStreams ───────────── v0.3.2 Installed Accessors ─────────────── v0.1.45 Installed PtrArrays ─────────────── v1.4.0 Installed VariantCallFormat ─────── v0.5.9 Installed DocStringExtensions ───── v0.9.5 Installed DelimitedFiles ────────── v1.9.1 Installed VCFTools ──────────────── v0.2.10 Installed StatsAPI ──────────────── v1.8.0 Installed MacroTools ────────────── v0.5.16 Installing 2 artifacts Installed artifact OpenSpecFun 105.4 KiB Installed artifact Rmath 111.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [a620830f] + VCFTools v0.2.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.9 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.129 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.8 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.40 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3bb67fe8] + TranscodingStreams v0.11.3 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 14.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.6 s ✓ MacroTools 1.6 s ✓ InlineStrings 0.6 s ✓ Reexport 0.9 s ✓ Statistics 0.6 s ✓ DataAPI 0.9 s ✓ ConstructionBase 1.9 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 1.2 s ✓ OrderedCollections 0.6 s ✓ InvertedIndices 0.7 s ✓ InverseFunctions 0.6 s ✓ CompositionsBase 0.9 s ✓ DocStringExtensions 1.7 s ✓ Combinatorics 0.8 s ✓ WorkerUtilities 2.3 s ✓ FillArrays 0.8 s ✓ BufferedStreams 0.5 s ✓ PtrArrays 0.5 s ✓ CommonSolve 1.1 s ✓ TranscodingStreams 0.5 s ✓ IteratorInterfaceExtensions 0.6 s ✓ LaTeXStrings 1.7 s ✓ Crayons 0.7 s ✓ DelimitedFiles 2.6 s ✓ PDMats 2.5 s ✓ ProgressMeter 1.8 s ✓ SentinelArrays 0.9 s ✓ Compat 1.3 s ✓ Preferences 1.9 s ✓ Statistics → SparseArraysExt 0.7 s ✓ Missings 0.8 s ✓ PooledArrays 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3.8 s ✓ DataStructures 1.7 s ✓ InverseFunctions → InverseFunctionsTestExt 1.1 s ✓ InverseFunctions → InverseFunctionsDatesExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.1 s ✓ LogExpFunctions 2.4 s ✓ FillArrays → FillArraysSparseArraysExt 1.0 s ✓ FillArrays → FillArraysStatisticsExt 0.7 s ✓ AliasTables 0.7 s ✓ BioGenerics 0.7 s ✓ CodecZlib 0.5 s ✓ TableTraits 2.3 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 2.1 s ✓ JLLWrappers 1.6 s ✓ PrecompileTools 1.0 s ✓ SortingAlgorithms 2.0 s ✓ QuadGK 4.8 s ✓ Accessors 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 0.8 s ✓ BGZFStreams 1.8 s ✓ Tables 2.3 s ✓ FilePathsBase 2.0 s ✓ Rmath_jll 2.0 s ✓ OpenSpecFun_jll 18.5 s ✓ Automa 3.7 s ✓ StringManipulation 10.8 s ✓ Parsers 5.3 s ✓ StatsBase 2.3 s ✓ Accessors → LinearAlgebraExt 2.2 s ✓ Accessors → TestExt 3.6 s ✓ FilePathsBase → FilePathsBaseTestExt 1.1 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.8 s ✓ Rmath 5.4 s ✓ SpecialFunctions [ Info: Compiling VCF parser... 15.9 s ✓ VariantCallFormat 47.7 s ✓ PrettyTables 1.1 s ✓ InlineStrings → ParsersExt 2.2 s ✓ PDMats → StatsBaseExt 7.0 s ✓ Roots 2.8 s ✓ HypergeometricFunctions 95.3 s ✓ DataFrames 2.9 s ✓ WeakRefStrings 2.5 s ✓ StatsFuns 24.4 s ✓ CSV 1.2 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 11.8 s ✓ Distributions 5.5 s ✓ Distributions → DistributionsTestExt 5.6 s ✓ HypothesisTests 6.1 s ✓ VCFTools 83 dependencies successfully precompiled in 364 seconds. 32 already precompiled. 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 420.52s ################################################################################ # Testing # Testing VCFTools Status `/tmp/jl_ZDEFoj/Project.toml` [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.129 [09f84164] HypothesisTests v0.11.8 [92933f4c] ProgressMeter v1.11.0 [276daf66] SpecialFunctions v2.8.0 [2913bbd2] StatsBase v0.34.12 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ZDEFoj/Manifest.toml` [7d9f7c33] Accessors v0.1.45 [66dad0bd] AliasTables v1.1.3 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.9 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.129 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.8 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.40 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.0 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [3bb67fe8] TranscodingStreams v0.11.3 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] LibCURL_jll v8.20.0+1 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time H-W test | 1 1 2.2s Test Summary: | Pass Total Time openvcf | 4 4 2.8s Test Summary: | Pass Total Time nrecords(vcf) | 1 1 2.5s Test Summary: | Pass Total Time nsamples(vcf) | 1 1 0.1s Test Summary: | Pass Total Time gtstats(record) | 4 4 3.7s ┌ Warning: accessing `Type.name` is deprecated without replacement. If for detection, use `Base.isType(x)`. │ caller = ProgressMeter.Progress(n::Int64, dt::Int64, desc::String, barlen::Nothing, color::Symbol, output::Base.PipeEndpoint; offset::Int64) at deprecated.jl:1 └ @ ProgressMeter ~/.julia/packages/ProgressMeter/N660J/src/deprecated.jl:1 ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Progress: 0%| | ETA: 0:51:38 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 16.677050 seconds (7.04 M allocations: 444.071 MiB, 2.41% gc time, 93.61% compilation time: 6% of which was recompilation) 0.538562 seconds (2.37 M allocations: 141.300 MiB, 6.36% gc time, 11.74% compilation time: <1% of which was recompilation) Progress: 0%| | ETA: 0:48:06 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 4.888213 seconds (3.20 M allocations: 196.441 MiB, 1.46% gc time, 87.19% compilation time) 0.637113 seconds (2.37 M allocations: 141.431 MiB, 4.58% gc time) Test Summary: | Pass Total Time gtstats(vcf) | 12 12 26.6s Test Summary: | Pass Total Time get sampleID | 4 4 0.1s Test Summary: | Pass Total Time Fishers exact HWE test | 20 20 0.0s Test Summary: | Pass Total Time filter_genotype(record) | 9 9 2.0s Test Summary: | Pass Total Time filter_genotype(file) | 4068 4068 2.7s Test Summary: | Pass Total Time flip_gt_allele | 4 4 1.0s Test Summary: | Pass Total Time match_gt_allele | 4 4 0.1s Test Summary: | Pass Total Time binomial_proportion_test | 2 2 1.0s [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:26:58 Progress: 0%| | ETA: 0:27:58 Progress: 0%|▏ | ETA: 0:26:43 Progress: 0%|▏ | ETA: 0:25:53 Progress: 0%|▏ | ETA: 0:26:03 Progress: 0%|▏ | ETA: 0:25:42 Progress: 0%|▎ | ETA: 0:25:27 Progress: 1%|▎ | ETA: 0:25:08 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allocations: 106.066 GiB, 7.06% gc time, 0.45% compilation time: <1% of which was recompilation) [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:26:32 Progress: 0%| | ETA: 0:26:57 Progress: 0%|▏ | ETA: 0:27:17 Progress: 0%|▏ | ETA: 0:28:03 Progress: 0%|▏ | ETA: 0:27:43 Progress: 0%|▏ | ETA: 0:27:45 Progress: 0%|▏ | ETA: 0:27:43 Progress: 0%|▎ | ETA: 0:27:38 Progress: 1%|▎ | ETA: 0:27:40 Progress: 1%|▎ | ETA: 0:27:55 Progress: 1%|▎ | ETA: 0:27:45 Progress: 1%|▎ | ETA: 0:27:36 Progress: 1%|▍ | ETA: 0:27:36 Progress: 1%|▍ | ETA: 0:27:32 Progress: 1%|▍ | ETA: 0:27:26 Progress: 1%|▍ | ETA: 0:27:40 Progress: 1%|▍ | ETA: 0:27:34 Progress: 1%|▌ | ETA: 0:27:33 Progress: 1%|▌ | ETA: 0:27:33 Progress: 1%|▌ | ETA: 0:27:29 Progress: 1%|▌ | ETA: 0:27:26 Progress: 1%|▌ | ETA: 0:27:33 Progress: 1%|▋ | ETA: 0:27:29 Progress: 1%|▋ | ETA: 0:27:26 Progress: 2%|▋ | ETA: 0:27:23 Progress: 2%|▋ | ETA: 0:27:17 Progress: 2%|▊ | ETA: 0:27:15 Progress: 2%|▊ | ETA: 0:27:19 Progress: 2%|▊ | ETA: 0:27:16 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0:21:05 Progress: 8%|███▏ | ETA: 0:21:04 Progress: 8%|███▏ | ETA: 0:21:02 Progress: 8%|███▏ | ETA: 0:21:00 Progress: 8%|███▎ | ETA: 0:20:58 Progress: 8%|███▎ | ETA: 0:20:58 Progress: 8%|███▎ | ETA: 0:20:56 Progress: 8%|███▎ | ETA: 0:20:55 Progress: 8%|███▍ | ETA: 0:20:52 Progress: 8%|███▍ | ETA: 0:20:50 Progress: 8%|███▍ | ETA: 0:20:50 Progress: 8%|███▍ | ETA: 0:20:48 Progress: 8%|███▌ | ETA: 0:20:46 Progress: 9%|███▌ | ETA: 0:20:44 Progress: 9%|███▌ | ETA: 0:20:42 Progress: 9%|███▌ | ETA: 0:20:42 Progress: 9%|███▋ | ETA: 0:20:40 Progress: 9%|███▋ | ETA: 0:20:38 Progress: 9%|███▋ | ETA: 0:20:36 Progress: 9%|███▊ | ETA: 0:20:34 Progress: 9%|███▊ | ETA: 0:20:34 Progress: 9%|███▊ | ETA: 0:20:33 Progress: 9%|███▊ | ETA: 0:20:31 Progress: 9%|███▉ | ETA: 0:20:29 Progress: 9%|███▉ | ETA: 0:20:28 Progress: 9%|███▉ | ETA: 0:20:27 Progress: 10%|███▉ | ETA: 0:20:26 Progress: 10%|████ | ETA: 0:20:24 Progress: 10%|████ | ETA: 0:20:22 Progress: 10%|████ | ETA: 0:20:21 Progress: 10%|████ | ETA: 0:20:20 Progress: 10%|████▏ | ETA: 0:20:18 Progress: 10%|████▏ | ETA: 0:20:17 Progress: 10%|████▏ | ETA: 0:20:16 Progress: 10%|████▏ | ETA: 0:20:14 Progress: 10%|████▎ | ETA: 0:20:14 Progress: 100%|█████████████████████████████████████████| Time: 0:02:19 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 1 days, 0:38:05 Progress: 13%|█████▌ | ETA: 0:14:06 Progress: 32%|█████████████▎ | ETA: 0:04:40 Progress: 50%|████████████████████▌ | ETA: 0:02:14 Progress: 67%|███████████████████████████▎ | ETA: 0:01:08 Progress: 86%|███████████████████████████████████▍ | ETA: 0:00:22 Progress: 100%|█████████████████████████████████████████| Time: 0:02:17 [ Info: 0 records are matched 288.034274 seconds (2.01 G allocations: 106.049 GiB, 6.95% gc time, 0.35% compilation time) Test Summary: | Pass Total Time conformgt_by_id | 1649 1649 16m15.6s [ Info: Match target POS to reference POS Progress: 0%| | ETA: 1 days, 1:30:29 Progress: 15%|██████▍ | ETA: 0:12:30 Progress: 32%|█████████████▎ | ETA: 0:04:47 Progress: 49%|████████████████████▎ | ETA: 0:02:23 Progress: 67%|███████████████████████████▌ | ETA: 0:01:09 Progress: 85%|██████████████████████████████████▋ | ETA: 0:00:26 Progress: 100%|█████████████████████████████████████████| Time: 0:02:21 [ Info: 833 records are matched 152.829147 seconds (1.01 G allocations: 53.814 GiB, 6.11% gc time, 0.41% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 1 days, 1:03:20 Progress: 13%|█████▍ | ETA: 0:14:54 Progress: 31%|████████████▉ | ETA: 0:04:57 Progress: 49%|████████████████████▏ | ETA: 0:02:22 Progress: 68%|████████████████████████████ | ETA: 0:01:04 Progress: 87%|███████████████████████████████████▊ | ETA: 0:00:20 Progress: 100%|█████████████████████████████████████████| Time: 0:02:19 [ Info: 493 records are matched 150.140420 seconds (1.01 G allocations: 53.814 GiB, 6.19% gc time, 0.40% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 1 days, 0:57:19 Progress: 16%|██████▋ | ETA: 0:11:27 Progress: 34%|██████████████▏ | ETA: 0:04:17 Progress: 52%|█████████████████████▌ | ETA: 0:02:03 Progress: 71%|█████████████████████████████ | ETA: 0:00:57 Progress: 88%|████████████████████████████████████▏ | ETA: 0:00:19 Progress: 100%|█████████████████████████████████████████| Time: 0:02:18 [ Info: 0 records are matched 149.554615 seconds (1.01 G allocations: 53.813 GiB, 6.13% gc time, 0.41% compilation time) Test Summary: | Pass Total Time conformgt_by_pos | 2502 2502 7m35.3s 1.217898 seconds (1.10 M allocations: 65.781 MiB, 1.39% gc time, 74.61% compilation time) 1.078452 seconds (1.02 M allocations: 62.861 MiB, 1.55% gc time, 71.15% compilation time) 1.058877 seconds (1.02 M allocations: 61.919 MiB, 72.31% compilation time) 0.403520 seconds (163.61 k allocations: 10.200 MiB, 99.94% compilation time) 0.011061 seconds (5.42 k allocations: 364.711 KiB, 93.78% compilation time) 0.009161 seconds (2.60 k allocations: 164.852 KiB, 93.05% compilation time) Test Summary: | Pass Total Time convert_gt(vcfile) | 11 11 9.2s 1.069961 seconds (910.99 k allocations: 55.241 MiB, 2.39% gc time, 70.66% compilation time) 0.991493 seconds (779.25 k allocations: 49.395 MiB, 1.91% gc time, 69.02% compilation time) Test Summary: | Pass Total Time convert_ht(vcfile) | 6 6 6.3s Test Summary: | Pass Total Time convert_ds | 5 5 1.2s 0.206019 seconds (523.99 k allocations: 30.649 MiB, 7.98% gc time, 14.29% compilation time) 0.667460 seconds (616.67 k allocations: 37.107 MiB, 1.77% gc time, 73.96% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:72 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:176 0.174485 seconds (520.01 k allocations: 32.143 MiB, 11.03% gc time) 0.629648 seconds (575.18 k allocations: 35.896 MiB, 75.27% compilation time) ┌ Warning: Reached end of record! Columns 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:414 ┌ Warning: Reached end of record! Rows 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:501 0.245328 seconds (1.30 M allocations: 54.159 MiB, 3.42% compilation time) 0.800782 seconds (1.41 M allocations: 61.604 MiB, 3.71% gc time, 70.29% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:672 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:787 Test Summary: | Pass Total Time convert to transpose functions | 13 13 6.8s Test Summary: | Pass Total Time record info | 14 14 5.9s Test Summary: | Pass Total Time write VCF | 3 3 3.8s 2.679833 seconds (4.70 M allocations: 294.403 MiB, 7.42% gc time, 47.32% compilation time) 1.261490 seconds (2.38 M allocations: 142.486 MiB, 1.35% gc time, 19.25% compilation time) 1.124723 seconds (4.42 M allocations: 276.416 MiB, 4.24% gc time) Test Summary: | Pass Total Time filter by sample/record index | 9 9 8.4s 1.173691 seconds (583.54 k allocations: 33.095 MiB, 1.04% gc time, 39.30% compilation time) Test Summary: | Pass Total Time mask_gt | 5 5 4.0s Test Summary: | Pass Total Time filter_chr | 4 4 1.9s Progress: 0%|▏ | ETA: 0:23:55 Progress: 1%|▎ | ETA: 0:23:55 Progress: 1%|▍ | ETA: 0:23:56 Progress: 1%|▋ | ETA: 0:23:59 Progress: 2%|▊ | ETA: 0:23:52 Progress: 2%|▉ | ETA: 0:23:45 Progress: 2%|█ | ETA: 0:23:49 Progress: 3%|█▏ | ETA: 0:23:49 Progress: 3%|█▎ | ETA: 0:23:52 Progress: 3%|█▍ | ETA: 0:23:48 Progress: 4%|█▌ | ETA: 0:23:50 Progress: 4%|█▋ | ETA: 0:23:47 Progress: 4%|█▊ | ETA: 0:23:43 Progress: 5%|██ | ETA: 0:23:41 Progress: 5%|██▏ | ETA: 0:23:34 Progress: 5%|██▎ | ETA: 0:23:31 Progress: 6%|██▍ | ETA: 0:23:27 Progress: 6%|██▌ | ETA: 0:23:23 Progress: 6%|██▋ | ETA: 0:23:18 Progress: 7%|██▊ | ETA: 0:23:15 Progress: 7%|██▉ | ETA: 0:23:12 Progress: 7%|███ | ETA: 0:23:06 Progress: 8%|███▏ | ETA: 0:23:02 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| ETA: 0:13:15 Progress: 44%|██████████████████▏ | ETA: 0:13:10 Progress: 44%|██████████████████▎ | ETA: 0:13:04 Progress: 45%|██████████████████▍ | ETA: 0:12:59 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 474 running 1 of 1 signal (10): User defined signal 1 maybe_record_alloc_to_profile at /source/src/gc-alloc-profiler.h:42:8 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:814:5 jl_new_memoryref at /source/src/genericmemory.c:309:56 _deepcopy_memory_t at ./deepcopy.jl:122:0 (pc: 125) deepcopy_internal at ./deepcopy.jl:104:0 [inlined] deepcopy_internal at ./deepcopy.jl:142:0 (pc: 48) deepcopy_internal at ./deepcopy.jl:133:0 (pc: 65) deepcopy at ./deepcopy.jl:34:0 [inlined] copy at /home/pkgeval/.julia/packages/VariantCallFormat/tQ143/src/record.jl:309:0 (pc: 267) iterate at /home/pkgeval/.julia/packages/BioGenerics/53MtO/src/IO.jl:90:0 [inlined] iterate at ./iterators.jl:209:0 [inlined] aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:46:0 (pc: 350) aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:26:0 (pc: 1) unknown function (ip: 0x6ffc31998f36) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 macro expansion at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:19:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2246:0 [inlined] top-level scope at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:3:0 (pc: 359) jl_invoke_oneshot at /source/src/gf.c:4361:23 ijl_eval_thunk at /source/src/toplevel.c:756:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 426) _start at ./client.jl:596:0 (pc: 295) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] true_main at /source/src/jlapi.c:985:29 jl_repl_entrypoint at /source/src/jlapi.c:1152:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x6ffc59622249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Progress: 45%|██████████████████▌ | ETA: 0:12:53┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00006ffc3e7fc010 Total snapshots: 685. Utilization: 100% ╎685 @Base/client.jl:596 _start() ╎ 685 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 685 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ 685 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ 685 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _path::St… ╎ 685 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 685 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity), m… ╎ ╎ 685 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ 685 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ ╎ 685 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _pat… ╎ ╎ 685 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module… ╎ ╎ ╎ 685 @Base/loading.jl:3132 include_string(mapexpr::typeof(identit… ╎ ╎ ╎ 685 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ ╎ 685 @VCFTools/…_test.jl:3 top-level scope ╎ ╎ ╎ 685 @Test/src/Test.jl:2246 macro expansion ╎ ╎ ╎ 685 @VCFTools/…test.jl:19 macro expansion ╎ ╎ ╎ ╎ 685 @VCFTools/…lect.jl:26 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 103 @VCFTools/…ect.jl:44 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 13 @VCFTools/…ect.jl:65 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 13 @VCFTools/…ts.jl:122 gtstats(record::VariantCallForm… ╎ ╎ ╎ ╎ 1 @VCFTools/…ts.jl:125 gtstats(record::VariantCallFor… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1040 getindex(A::Vector{Vector{Uni… ╎ ╎ ╎ ╎ 7 @VCFTools/…ts.jl:127 gtstats(record::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 3 @VCFTools/…t.jl:225 geno_ismissing(record::Variant… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 getindex(A::Vector{UInt8}, i:… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 checkbounds(A::Vector{UInt8},… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex(A::Vector{UInt8}, i:… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:658 ==(x::UInt8, y::UInt8) 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1040 getindex(A::Vector{UnitRange{… ╎ ╎ ╎ ╎ ╎ 3 @Base/…ators.jl:425 >(x::Int64, y::Int64) 3╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:83 <(x::Int64, y::Int64) 2╎ ╎ ╎ ╎ 4 @VCFTools/…ts.jl:132 gtstats(record::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:3225 getindex(v::UnitRange{Int64}, … 1╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:959 _getindex(v::UnitRange{Int64},… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1040 getindex(A::Vector{UInt8}, i:… ╎ ╎ ╎ ╎ 1 @VCFTools/…ts.jl:133 gtstats(record::VariantCallFor… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:658 ==(x::UInt8, y::UInt8) ╎ ╎ ╎ ╎ 76 @VCFTools/…ect.jl:74 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 74 @Base/array.jl:2528 findfirst(testf::Base.Fix2{typeo… 1╎ ╎ ╎ ╎ 69 @Base/array.jl:2477 findnext(testf::Base.Fix2{typeo… 3╎ ╎ ╎ ╎ ╎ 3 @Base/…tials.jl:1040 getindex(A::Vector{String}, i… ╎ ╎ ╎ ╎ ╎ 65 @Base/…ators.jl:1206 (::Base.Fix2{typeof(isequal),… ╎ ╎ ╎ ╎ ╎ 65 @Base/…tors.jl:1206 (::Base.Fix2{typeof(isequal),… ╎ ╎ ╎ ╎ ╎ 65 @Base/…tors.jl:178 isequal(x::String, y::String) 65╎ ╎ ╎ ╎ ╎ 65 @Base/…ring.jl:238 ==(a::String, b::String) 1╎ ╎ ╎ ╎ 5 @Base/array.jl:2478 findnext(testf::Base.Fix2{typeo… 4╎ ╎ ╎ ╎ ╎ 4 @Base/…otion.jl:658 ==(x::Int64, y::Int64) ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1039 getindex(A::Vector{String}, i:… ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:391 checkbounds(A::Vector{String},… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:387 checkbounds(::Type{Bool}, A::V… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 getindex(A::Vector{String}, i:… ╎ ╎ ╎ ╎ 9 @VCFTools/…ect.jl:76 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 9 @VariantCallFormat/…:613 findgenokey(record::Variant… 1╎ ╎ ╎ ╎ 1 @Base/…piler.jl:58 getproperty(x::VariantCallFormat… ╎ ╎ ╎ ╎ 8 @Base/array.jl:2528 findfirst(testf::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 8 @Base/array.jl:2477 findnext(testf::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 7 @VariantCallFormat/…:613 (::VariantCallFormat.var… ╎ ╎ ╎ ╎ ╎ 7 @VariantCallFormat/…:673 isequaldata(str::String… 6╎ ╎ ╎ ╎ ╎ 6 @VariantCallFormat/…:677 memcmp(p1::Ptr{UInt8},… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1273 pointer(x::Vector{UInt8}, i… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1270 pointer(x::Vector{UInt8}) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nter.jl:63 cconvert(::Type{Ptr{UInt8}}… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex(A::Vector{UnitRange{… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:79 aim_select(record::VariantCallFo… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 getindex(A::Vector{UnitRange{I… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:82 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 1 @Base/array.jl:3225 getindex(v::UnitRange{Int64}, i:… ╎ ╎ ╎ ╎ 1 @Base/range.jl:959 _getindex(v::UnitRange{Int64}, i… ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:946 _in_unit_range(v::UnitRange{Int… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:560 <=(x::Int64, y::Int64) ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:83 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 1 @Base/array.jl:3225 getindex(v::UnitRange{Int64}, i:… ╎ ╎ ╎ ╎ 1 @Base/range.jl:959 _getindex(v::UnitRange{Int64}, i… 1╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:946 _in_unit_range(v::UnitRange{Int… 1╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:96 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:99 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 1 @Base/…al/log.jl:255 log(x::Float64) ╎ ╎ ╎ ╎ 1 @Base/…al/log.jl:284 _log(x::Float64, base::Val{:ℯ}… ╎ ╎ ╎ ╎ ╎ 1 @Base/…l/log.jl:157 log_proc1(y::Float64, mf::Floa… 1╎ ╎ ╎ ╎ ╎ 1 @Base/float.jl:483 +(x::Float64, y::Float64) ╎ ╎ ╎ ╎ 582 @VCFTools/…ect.jl:46 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 582 @Base/…rators.jl:209 iterate(e::Base.Iterators.Enumer… ╎ ╎ ╎ ╎ 133 @BioGenerics/…jl:87 iterate(reader::VariantCallForma… ╎ ╎ ╎ ╎ 133 @BioGenerics/…jl:76 tryread!(reader::VariantCallFor… 1╎ ╎ ╎ ╎ ╎ 133 @VariantCallFormat/…:142 read!(reader::VariantCall… ╎ ╎ ╎ ╎ ╎ 108 @VariantCallFormat/…:165 _read!(reader::VariantCa… ╎ ╎ ╎ ╎ ╎ 52 @Automa/…en.jl:449 macro expansion ╎ ╎ ╎ ╎ ╎ 20 @Base/array.jl:441 getindex(::Type{UnitRange{In… 20╎ ╎ ╎ ╎ ╎ 20 @Base/boot.jl:720 Vector{UnitRange{Int64}}(::U… ╎ ╎ ╎ ╎ ╎ 27 @Base/array.jl:1373 push!(a::Vector{Vector{Unit… ╎ ╎ ╎ ╎ ╎ 25 @Base/…ray.jl:1376 _push!(a::Vector{Vector{Uni… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:1232 _growend!(a::Vector{Vector… 3╎ ╎ ╎ ╎ ╎ ╎ 23 @Base/…ray.jl:1233 _growend!(a::Vector{UnitRa… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1186 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ay.jl:1187 _growend_internal!(a::Vect… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ler.jl:58 getproperty(x::Vector{Unit… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1193 _growend_internal!(a::Vect… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 -(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ay.jl:1208 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1124 overallocation(maxsize::I… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 -(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1125 overallocation(maxsize::I… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ay.jl:1209 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ay.jl:1129 array_new_memory(mem::Mem… 12╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ot.jl:659 Memory{UnitRange{Int64}}(… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ay.jl:1218 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:1377 _push!(a::Vector{UnitRange{… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:1072 __safe_setindex!(A::Vector… ╎ ╎ ╎ ╎ ╎ 3 @Base/…ials.jl:1039 getindex(A::Vector{Vector{U… ╎ ╎ ╎ ╎ ╎ 3 @Base/…ials.jl:391 checkbounds(A::Vector{Vecto… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…als.jl:387 checkbounds(::Type{Bool}, A… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:1040 getindex(A::Vector{Vector{U… ╎ ╎ ╎ ╎ ╎ 1 @Automa/…en.jl:502 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 1╎ ╎ ╎ ╎ ╎ 1 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… ╎ ╎ ╎ ╎ ╎ 1 @Automa/…en.jl:503 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:1468 in(x::UInt8, r::UnitRange{U… 1╎ ╎ ╎ ╎ ╎ 1 @Base/bool.jl:14 &(x::Bool, y::Bool) 1╎ ╎ ╎ ╎ ╎ 2 @Automa/…en.jl:574 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 <(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 18 @Automa/…en.jl:577 macro expansion ╎ ╎ ╎ ╎ ╎ 18 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 13╎ ╎ ╎ ╎ ╎ 18 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… 5╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/int.jl:560 <=(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 19 @Automa/…en.jl:578 macro expansion 16╎ ╎ ╎ ╎ ╎ 16 @Base/bool.jl:14 &(x::Bool, y::Bool) 3╎ ╎ ╎ ╎ ╎ 3 @Base/bool.jl:15 |(x::Bool, y::Bool) ╎ ╎ ╎ ╎ ╎ 8 @Automa/…en.jl:579 macro expansion 1╎ ╎ ╎ ╎ ╎ 8 @Base/range.jl:928 iterate(r::UnitRange{Int64},… 7╎ ╎ ╎ ╎ ╎ 7 @Base/…tion.jl:658 ==(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ 1 @Automa/…en.jl:580 macro expansion ╎ ╎ ╎ ╎ ╎ 6 @Automa/…en.jl:588 macro expansion ╎ ╎ ╎ ╎ ╎ 4 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 4╎ ╎ ╎ ╎ ╎ 4 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… ╎ ╎ ╎ ╎ ╎ 2 @Automa/…ry.jl:57 getindex(mem::Automa.SizedMem… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…nter.jl:151 unsafe_load(p::Ptr{UInt8}, … ╎ ╎ ╎ ╎ ╎ 24 @VariantCallFormat/…:181 _read!(reader::VariantCa… ╎ ╎ ╎ ╎ ╎ 24 @BufferedStreams/…:61 fillbuffer!(stream::Buffer… ╎ ╎ ╎ ╎ ╎ 24 @BufferedStreams/…:71 fillbuffer!(stream::Buffe… ╎ ╎ ╎ ╎ ╎ 24 @BufferedStreams/…:5 readbytes!(source::Transc… ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/io.jl:1185 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 1 @TranscodingStreams/…:208 eof(stream::Transc… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:58 getproperty(x::Transcoding… ╎ ╎ ╎ ╎ ╎ ╎ 4 @TranscodingStreams/…:213 eof(stream::Transc… ╎ ╎ ╎ ╎ ╎ ╎ 4 @TranscodingStreams/…:222 sloweof(stream::T… ╎ ╎ ╎ ╎ ╎ ╎ 4 @TranscodingStreams/…:610 fillbuffer(strea… ╎ ╎ ╎ ╎ ╎ ╎ 1 @TranscodingStreams/…:623 fillbuffer(stre… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @TranscodingStreams/…:746 readdata!(inpu… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/io.jl:924 unsafe_read(s::IOStream… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:42 unsafe_read(s::IOStrea… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:195 lock(rl::ReentrantLo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:171 trylock(rl::Reentra… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:176 _trylock(rl::Reent… ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:624 fillbuffer(stre… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:685 callprocess(st… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @CodecZlib/…:195 process(codec::GzipDec… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @CodecZlib/…:127 inflate!(zstream::Cod… ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/io.jl:1186 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 12 @TranscodingStreams/…:306 read(stream::Trans… ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/io.jl:377 peek(s::TranscodingStreams.… ╎ ╎ ╎ ╎ ╎ ╎ 4 @TranscodingStreams/…:298 peek(stream::Tra… 4╎ ╎ ╎ ╎ ╎ ╎ 4 @TranscodingStreams/…:209 eof(stream::Tra… ╎ ╎ ╎ ╎ ╎ ╎ 8 @TranscodingStreams/…:302 peek(stream::Tra… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::Transcodin… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ls.jl:1039 getindex(A::Vector{UInt… 4╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ls.jl:391 checkbounds(A::Vector{U… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ls.jl:1040 getindex(A::Vector{UInt… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/io.jl:1188 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ors.jl:425 >(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 <(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/io.jl:1192 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ray.jl:393 setindex!(V::SubArray{UInt… ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ay.jl:1048 setindex!(A::Vector{UInt8… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1052 _setindex!(A::Vector{UIn… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:391 checkbounds(A::Vector{UI… 4╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ay.jl:1053 _setindex!(A::Vector{UIn… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::Vector{UIn… ╎ ╎ ╎ ╎ 449 @BioGenerics/…jl:90 iterate(reader::VariantCallForma… ╎ ╎ ╎ ╎ 449 @VariantCallFormat/…:309 copy(record::VariantCallFo… ╎ ╎ ╎ ╎ ╎ 449 @Base/…epcopy.jl:34 deepcopy(x::Vector{Vector{Unit… ╎ ╎ ╎ ╎ ╎ 449 @Base/…pcopy.jl:133 deepcopy_internal(x::Vector{V… ╎ ╎ ╎ ╎ ╎ 449 @Base/…copy.jl:142 deepcopy_internal(x::MemoryRe… ╎ ╎ ╎ ╎ ╎ 449 @Base/…copy.jl:104 deepcopy_internal(x::Memory{… ╎ ╎ ╎ ╎ ╎ 1 @Base/…copy.jl:111 _deepcopy_memory_t(x::Memor… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:659 (::Type{Memory{T}} where T)… ╎ ╎ ╎ ╎ ╎ 1 @Base/…copy.jl:113 _deepcopy_memory_t(x::Memor… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:665 memoryref(mem::Memory) ╎ ╎ ╎ ╎ ╎ 1 @Base/…copy.jl:114 _deepcopy_memory_t(x::Memor… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:665 memoryref(mem::Memory) 58╎ ╎ ╎ ╎ ╎ 58 @Base/…copy.jl:116 _deepcopy_memory_t(x::Memor… 13╎ ╎ ╎ ╎ ╎ 13 @Base/…copy.jl:117 _deepcopy_memory_t(x::Memor… 12╎ ╎ ╎ ╎ ╎ 12 @Base/…copy.jl:118 _deepcopy_memory_t(x::Memor… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…copy.jl:119 _deepcopy_memory_t(x::Memor… 30╎ ╎ ╎ ╎ ╎ 297 @Base/…copy.jl:120 _deepcopy_memory_t(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 32 @Base/…opy.jl:129 deepcopy_internal(x::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 32 @Base/…ict.jl:19 haskey(d::IdDict{Any, Any},… ╎ ╎ ╎ ╎ ╎ ╎ 32 @Base/…ct.jl:185 in(k::Vector{UnitRange{Int… 32╎ ╎ ╎ ╎ ╎ ╎ 32 @Base/…ct.jl:95 get(d::IdDict{Any, Any}, k… ╎ ╎ ╎ ╎ ╎ ╎ 52 @Base/…opy.jl:132 deepcopy_internal(x::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 8 @Base/boot.jl:732 Vector{UnitRange{Int64}}(:… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:719 Vector{UnitRange{Int64}}(:… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:659 Memory{UnitRange{Int64}}(… 6╎ ╎ ╎ ╎ ╎ ╎ 7 @Base/…ot.jl:720 Vector{UnitRange{Int64}}(:… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:665 memoryref(mem::Memory{Uni… 1╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ict.jl:84 setindex!(d::IdDict{Any, An… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:58 getproperty(x::IdDict{Any,… 40╎ ╎ ╎ ╎ ╎ ╎ 42 @Base/…ict.jl:89 setindex!(d::IdDict{Any, An… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ler.jl:62 setproperty!(x::IdDict{Any… 4╎ ╎ ╎ ╎ ╎ ╎ 181 @Base/…opy.jl:133 deepcopy_internal(x::Vector… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:58 getproperty(x::Vector{UnitR… ╎ ╎ ╎ ╎ ╎ ╎ 62 @Base/…opy.jl:138 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 62 @Base/…ict.jl:19 haskey(d::IdDict{Any, Any}… ╎ ╎ ╎ ╎ ╎ ╎ 62 @Base/…ct.jl:185 in(k::MemoryRef{UnitRange… 61╎ ╎ ╎ ╎ ╎ ╎ 62 @Base/…ct.jl:95 get(d::IdDict{Any, Any}, … 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::IdDict{An… ╎ ╎ ╎ ╎ ╎ ╎ 111 @Base/…opy.jl:142 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 27 @Base/…py.jl:101 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 27 @Base/…ct.jl:19 haskey(d::IdDict{Any, Any}… 1╎ ╎ ╎ ╎ ╎ ╎ 27 @Base/…ct.jl:185 in(k::Memory{UnitRange{I… 25╎ ╎ ╎ ╎ ╎ ╎ ╎ 25 @Base/…ct.jl:95 get(d::IdDict{Any, Any},… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:96 get(d::IdDict{Any, Any},… 10╎ ╎ ╎ ╎ ╎ ╎ 84 @Base/…py.jl:104 deepcopy_internal(x::Memor… 4╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…py.jl:107 _deepcopy_memory_t(x::Mem… 11╎ ╎ ╎ ╎ ╎ ╎ 70 @Base/…py.jl:109 _deepcopy_memory_t(x::Mem… ╎ ╎ ╎ ╎ ╎ ╎ 15 @Base/…ry.jl:170 copy(a::Memory{UnitRange… 15╎ ╎ ╎ ╎ ╎ ╎ ╎ 15 @Base/…ot.jl:659 Memory{UnitRange{Int64}… 1╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ry.jl:171 copy(a::Memory{UnitRange… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ry.jl:134 unsafe_copyto!(dest::Me… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:666 memoryref(mem::Memory{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ry.jl:116 unsafe_copyto!(dest::M… 4╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…em.jl:28 memmove(dst::Ptr{Nothi… 35╎ ╎ ╎ ╎ ╎ ╎ 35 @Base/…ct.jl:89 setindex!(d::IdDict{Any, … ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ct.jl:90 setindex!(d::IdDict{Any, … 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…er.jl:62 setproperty!(x::IdDict{A… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ue.jl:59 getindex(b::Base.RefValu… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::Base.Ref… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…opy.jl:144 deepcopy_internal(x::Memor… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…opy.jl:134 deepcopy_internal(x::Vector… 53╎ ╎ ╎ ╎ ╎ 53 @Base/…copy.jl:122 _deepcopy_memory_t(x::Memor… 9╎ ╎ ╎ ╎ ╎ 9 @Base/…copy.jl:123 _deepcopy_memory_t(x::Memor… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…copy.jl:125 _deepcopy_memory_t(x::Memor… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d11c336efe0 Total snapshots: 404. Utilization: 0% ╎404 @Base/task.jl:1170 wait_forever() 403╎ 404 @Base/task.jl:1248 wait() Progress: 46%|██████████████████▊ | ETA: 0:12:51 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 19870581 (Pool: 19869798; Big: 783); GC: 21 [474] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:1 unknown function (ip: 0x6ffc5974d4e3) at /lib/x86_64-linux-gnu/libc.so.6 ijl_egal__bitstag at /source/src/builtins.c:311:25 [inlined] ijl_egal__bitstag at /source/src/builtins.c:247:18 == at ./strings/string.jl:238:0 [inlined] isequal at ./operators.jl:178:0 [inlined] #_#57 at ./operators.jl:1206:0 [inlined] Fix at ./operators.jl:1206:0 [inlined] findnext at ./array.jl:2477:0 [inlined] findfirst at ./array.jl:2528:0 [inlined] aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:74:0 (pc: 146) aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:44:0 (pc: 274) aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:26:0 (pc: 1) unknown function (ip: 0x6ffc31998f36) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 macro expansion at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:19:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2246:0 [inlined] top-level scope at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:3:0 (pc: 359) jl_invoke_oneshot at /source/src/gf.c:4361:23 ijl_eval_thunk at /source/src/toplevel.c:756:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 426) _start at ./client.jl:596:0 (pc: 295) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] true_main at /source/src/jlapi.c:985:29 jl_repl_entrypoint at /source/src/jlapi.c:1152:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x6ffc59622249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 13635653656 (Pool: 13635638219; Big: 15437); GC: 15529 PkgEval terminated after 2737.3s: test duration exceeded the time limit