Package evaluation to test PlantSimEngine on Julia 1.14.0-DEV.2462 (fcc4213c48*) started at 2026-06-30T23:47:07.306 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 13.75s ################################################################################ # Installation # Installing PlantSimEngine... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [9a576370] + PlantSimEngine v0.14.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.10 [336ed68f] + CSV v0.10.16 [da1fd8a2] + CodeTracking v3.0.2 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [48062228] + FilePathsBase v0.9.24 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [86223c79] + Graphs v1.14.0 ⌅ [cd3eb016] + HTTP v1.11.0 ⌅ [eafb193a] + Highlights v0.5.3 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [0c81fc1b] + InputBuffers v1.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [fa8bd995] + MetaGraphsNext v0.8.0 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.15.4 [af6c499f] + MutableNamedTuples v0.1.3 [1c23619d] + MyterialColors v0.3.0 [71a1bf82] + NameResolution v0.1.5 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌅ [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.6 [4630fe09] + PlantMeteo v0.8.4 [9a576370] + PlantSimEngine v0.14.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [22787eb5] + Term v2.0.8 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [fdbf4ff8] + XLSX v0.11.11 [72c71f33] + XML v0.3.9 [ddb6d928] + YAML v0.4.16 [49080126] + ZipArchives v2.6.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 11.9 s ✓ MultiScaleTreeGraph 11.8 s ✓ PlantMeteo 49.3 s ✓ PlantSimEngine 22.2 s ✓ PlantSimEngine → PlantSimEngineGraphEditorExt 4 dependencies successfully precompiled in 98 seconds. 168 already precompiled. Precompilation completed after 124.28s ################################################################################ # Testing # Testing PlantSimEngine Status `/tmp/jl_6HJNEm/Project.toml` [4c88cf16] Aqua v0.8.16 [6e4b80f9] BenchmarkTools v1.8.0 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [e30172f5] Documenter v1.17.0 ⌅ [cd3eb016] HTTP v1.11.0 [dd4a991b] MultiScaleTreeGraph v0.15.4 [4630fe09] PlantMeteo v0.8.4 [9a576370] PlantSimEngine v0.14.1 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.13.0 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_6HJNEm/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [198e06fe] BangBang v0.4.9 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.8.0 [d1d4a3ce] BitFlags v0.1.10 [336ed68f] CSV v0.10.16 [da1fd8a2] CodeTracking v3.0.2 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [48062228] FilePathsBase v0.9.24 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.14.0 ⌅ [cd3eb016] HTTP v1.11.0 ⌅ [eafb193a] Highlights v0.5.3 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [0c81fc1b] InputBuffers v1.1.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [739be429] MbedTLS v1.1.10 [fa8bd995] MetaGraphsNext v0.8.0 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [dd4a991b] MultiScaleTreeGraph v0.15.4 [af6c499f] MutableNamedTuples v0.1.3 [1c23619d] MyterialColors v0.3.0 [71a1bf82] NameResolution v0.1.5 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [4630fe09] PlantMeteo v0.8.4 [9a576370] PlantSimEngine v0.14.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.3.2 [33c8b6b6] ProgressLogging v0.1.6 [189a3867] 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[e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7.0"` in "/home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/Project.toml". │ SHA is a non-upgradable standard library with version 1.13.0 in the current Julia version. │ Fix by setting compat to "0.7.0, 1" to mark support of the current version 1.13.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:520 [ Info: Some variables must be initialized before simulation: (process1 = (:var1, :var2), process2 = (:var1,)) (see `to_initialize()`) [ Info: Some variables must be initialized before simulation: (process1 = (:var1, :var2), process2 = (:var1,)) (see `to_initialize()`) [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{Symbol, Tuple}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::ModelMapping{PlantSimEngine.MultiScale, Dict{Symbol, Tuple}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: No model runs at the meteo base timestep (3600.0 s). Resolved model timesteps: Leaf/mrmeteodailyconsumer=7200.0s (ModelSpec). └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/time/runtime/clocks.jl:387 ┌ Warning: `run!(mtg, mapping::AbstractDict, ...)` is deprecated. Use `run!(mtg, ModelMapping(mapping), ...)` or construct `ModelMapping(...)` directly. │ caller = kwcall(::@NamedTuple{executor::SequentialEx{@NamedTuple{}}, tracked_outputs::Vector{OutputRequest{Nothing, HoldLast, Nothing}}, return_requested_outputs::Bool}, ::typeof(run!), object::Node{NodeMTG, MultiScaleTreeGraph.ColumnarAttrs}, mapping::Dict{Symbol, Tuple{ModelSpec{MRExportSourceModel, Nothing, Float64, @NamedTuple{}, @NamedTuple{}, Nothing, @NamedTuple{}, Symbol}}}, meteo::TimeStepTable{Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}}) at run.jl:608 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:608 [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: String scale names are deprecated and will be removed in a future release. Use Symbol scales, e.g. `:Leaf` instead of `"Leaf"`. │ caller = top-level scope at test-simulation.jl:27 └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-simulation.jl:27 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = run!(object::Vector{ModelMapping{PlantSimEngine.SingleScale, ModelList{@NamedTuple{process1::Process1Model, process2::Process2Model, process3::Process3Model}, Status{(:var5, :var4, :var6, :var1, :var3, :var2), NTuple{6, Base.RefValue{Float64}}}}}}, meteo::Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}, constants::Constants{Float64}, extra::Nothing; tracked_outputs::Nothing, check::Bool, executor::ThreadedEx{@NamedTuple{}}, return_requested_outputs::Bool, requested_outputs_sink::Type{DataFrame}) at run.jl:193 [inlined] └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:461 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = run!(object::Dict{String, ModelMapping{PlantSimEngine.SingleScale, ModelList{@NamedTuple{process1::Process1Model, process2::Process2Model, process3::Process3Model}, Status{(:var5, :var4, :var6, :var1, :var3, :var2), NTuple{6, Base.RefValue{Float64}}}}}}, meteo::Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}, constants::Constants{Float64}, extra::Nothing; tracked_outputs::Nothing, check::Bool, executor::ThreadedEx{@NamedTuple{}}, return_requested_outputs::Bool, requested_outputs_sink::Type{DataFrame}) at run.jl:193 [inlined] └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = run!(object::Vector{ModelMapping{PlantSimEngine.SingleScale, ModelList{@NamedTuple{process1::Process1Model, process2::Process2Model, process3::Process3Model}, Status{(:var5, :var4, :var6, :var1, :var3, :var2), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Vector{Float64}}, Base.RefValue{Float64}, Base.RefValue{Float64}}}}}}, meteo::TimeStepTable{Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}}, constants::Constants{Float64}, extra::Nothing; tracked_outputs::Nothing, check::Bool, executor::ThreadedEx{@NamedTuple{}}, return_requested_outputs::Bool, requested_outputs_sink::Type{DataFrame}) at run.jl:193 [inlined] └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:262 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = run!(object::Dict{String, ModelMapping{PlantSimEngine.SingleScale, ModelList{@NamedTuple{process1::Process1Model, process2::Process2Model, process3::Process3Model}, Status{(:var5, :var4, :var6, :var1, :var3, :var2), Tuple{Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Float64}, Base.RefValue{Vector{Float64}}, Base.RefValue{Float64}, Base.RefValue{Float64}}}}}}, meteo::TimeStepTable{Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}}, constants::Constants{Float64}, extra::Nothing; tracked_outputs::Nothing, check::Bool, executor::ThreadedEx{@NamedTuple{}}, return_requested_outputs::Bool, requested_outputs_sink::Type{DataFrame}) at run.jl:193 [inlined] └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 Issue in function #233 for node #3. ┌ Warning: A parallel executor was provided (`executor=ThreadedEx()`) but some models cannot be run in parallel: ToyRUEGrowthModel{Float64}(0.3). The simulation will be run sequentially. Use `executor=SequentialEx()` to remove this warning. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:376 Dependency graph view: Error During Test at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-dependency-graph-view.jl:80 Got exception outside of a @test Scale `Plant` defines duplicate process(es): graph_view_plant_age. Keep only one model per process at a given scale (or use hard dependencies). Stacktrace: [1] error(::String, ::String) @ Base error.jl:56 [2] _check_scale_process_uniqueness!(mapping::Dict{Symbol, Tuple}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:561 [3] _check_multiscale_mapping!(mapping::Dict{Symbol, Tuple}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:538 [inlined] [4] (ModelMapping{PlantSimEngine.MultiScale})(mapping::Dict{Symbol, Any}; check::Bool, type_promotion::Nothing) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:334 [inlined] [5] ModelMapping(::Pair{Symbol, Tuple{GraphViewPlantAgeModel, GraphViewPhytomerEmissionModel, Status{(:day,), Tuple{Base.RefValue{Float64}}}}}, ::Vararg{Any}; scale::Symbol, status::Nothing, type_promotion::Nothing, check::Bool, processes::@Kwargs{}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:400 [6] ModelMapping(::Pair{Symbol, Tuple{GraphViewPlantAgeModel, GraphViewPhytomerEmissionModel, Status{(:day,), Tuple{Base.RefValue{Float64}}}}}, ::Pair{Symbol, MultiScaleModel{GraphViewInitiationAgeModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{Symbol, Symbol}, Vector{Pair{Symbol, Symbol}}}}}}}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:369 [7] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-dependency-graph-view.jl:81 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [9] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-dependency-graph-view.jl:158 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [11] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:18 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [13] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:74 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [15] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:74 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core boot.jl:522 [19] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [20] _start() @ Base client.jl:596 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{Symbol, Tuple}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, DataType}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 [ Info: Listening on: 127.0.0.1:45909, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:45909 closing [ Info: Listening on: 127.0.0.1:44657, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:44657 closing [ Info: Listening on: 127.0.0.1:38463, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:38463 closing Issue in function #233 for node #4. ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 4 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 5 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 6 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 7 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 4 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 Issue in function #233 for node #3. Issue in function #233 for node #5. Cyclic dependency -> error: Test Failed at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:59 Expression: cycle_vec == [ToyPlantRmModel() => :Plant, ToyMaintenanceRespirationModel{Float64}(2.1, 0.06, 25.0, 1.0, 0.025) => :Leaf, ToyCBiomassModel{Float64}(1.2) => :Leaf, ToyCAllocationModel() => :Plant, ToyPlantRmModel() => :Plant] Evaluated: Pair{AbstractModel, Symbol}[ToyCAllocationModel() => :Plant, ToyPlantRmModel() => :Plant, ToyMaintenanceRespirationModel{Float64}(2.1, 0.06, 25.0, 1.0, 0.025) => :Leaf, ToyCBiomassModel{Float64}(1.2) => :Leaf, ToyCAllocationModel() => :Plant] == Pair{AbstractModel, Symbol}[ToyPlantRmModel() => :Plant, ToyMaintenanceRespirationModel{Float64}(2.1, 0.06, 25.0, 1.0, 0.025) => :Leaf, ToyCBiomassModel{Float64}(1.2) => :Leaf, ToyCAllocationModel() => :Plant, ToyPlantRmModel() => :Plant] Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:18 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:59 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Soft dependency whose parent is a hard dependency of a parent at a different scale: Error During Test at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-corner-cases.jl:336 Got exception outside of a @test Scale `E3` defines duplicate process(es): hard_dep_same_scale_echelle3. Keep only one model per process at a given scale (or use hard dependencies). Stacktrace: [1] error(::String, ::String) @ Base error.jl:56 [2] _check_scale_process_uniqueness!(mapping::Dict{Symbol, Tuple}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:561 [3] _check_multiscale_mapping!(mapping::Dict{Symbol, Tuple}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:538 [inlined] [4] (ModelMapping{PlantSimEngine.MultiScale})(mapping::Dict{Symbol, Any}; check::Bool, type_promotion::Nothing) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:334 [inlined] [5] ModelMapping(::Pair{Symbol, Tuple{HardDepSameScaleEchelle1Model, MultiScaleModel{HardDepSameScaleEchelle1bisModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{Symbol, Symbol}, Vector{Pair{Symbol, Symbol}}}}}}, Status{(:a,), Tuple{Base.RefValue{Float64}}}}}, ::Vararg{Any}; scale::Symbol, status::Nothing, type_promotion::Nothing, check::Bool, processes::@Kwargs{}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:400 [6] ModelMapping(::Pair{Symbol, Tuple{HardDepSameScaleEchelle1Model, MultiScaleModel{HardDepSameScaleEchelle1bisModel, Vector{Pair{Union{Symbol, PreviousTimeStep}, Union{Pair{Symbol, Symbol}, Vector{Pair{Symbol, Symbol}}}}}}, Status{(:a,), Tuple{Base.RefValue{Float64}}}}}, ::Pair{Symbol, Tuple{HardDepSameScaleEchelle3Model, HardDepSameScaleAvalModel, Status{(:d,), Tuple{Base.RefValue{Float64}}}}}) @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:369 [7] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-corner-cases.jl:337 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [9] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-corner-cases.jl:337 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [11] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:18 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [13] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:88 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [15] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/runtests.jl:88 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core boot.jl:522 [19] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [20] _start() @ Base client.jl:596 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 25 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm12hash_combineIJjPNS_5ValueElEEENS_9hash_codeEDpRKT_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12DenseMapInfoIN12_GLOBAL__N_18GEPValueEvE12getHashValueERKS2_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN12_GLOBAL__N_18EarlyCSE11processNodeEPN4llvm15DomTreeNodeBaseINS1_10BasicBlockEEE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN12_GLOBAL__N_18EarlyCSE3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12EarlyCSEPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/src/pipeline.cpp:989:12 operator() at /source/src/jitlayers.cpp:1271:17 operator() at /source/src/jitlayers.cpp:1409:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2360:18 materialize at /source/src/jitlayers.cpp:876:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:361:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2059:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:511:39 jl_compile_method_very_internal at /source/src/gf.c:3908:27 _jl_invoke at /source/src/gf.c:4318:16 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 collect at ./array.jl:843:0 (pc: 68) _totuple at ./tuple.jl:488:0 [inlined] Tuple at ./tuple.jl:452:0 (pc: 1) unknown function (ip: 0x7f6a6c685e7b) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 iterate at /home/pkgeval/.julia/packages/Tables/oWklV/src/namedtuples.jl:76:0 (pc: 23) iterate at ./generator.jl:45:0 [inlined] collect at ./array.jl:833:0 (pc: 12) TimeStepTable at /home/pkgeval/.julia/packages/PlantMeteo/VeZHk/src/structs/TimeStepTable.jl:56:0 (pc: 4) TimeStepTable at /home/pkgeval/.julia/packages/PlantMeteo/VeZHk/src/structs/TimeStepTable.jl:56:0 [inlined] adjust_weather_timesteps_to_given_length at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:98:0 (pc: 2) #_run_modellist_singleton#324 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:353:0 (pc: 18) _run_modellist_singleton at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:338:0 [inlined] #run!#317 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:152:0 [inlined] run! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:139:0 [inlined] run! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:139:0 (pc: 3) unknown function (ip: 0x7f6a6c681b42) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 ##core#151 at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:647:0 (pc: 3) ##sample#152 at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:659:0 (pc: 4) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 #_lineartrial#40 at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:222:0 (pc: 80) _lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:216:0 (pc: 1) jfptr__lineartrial_0 at /home/pkgeval/.julia/compiled/v1.14/BenchmarkTools/ZXPQo_Vkgek.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] jl_f_invokelatest at /source/src/builtins.c:933:23 #lineartrial#32 at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:53:0 [inlined] lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:52:0 [inlined] #tune!#46 at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:341:0 (pc: 5) tune! at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:330:0 [inlined] tune! at /home/pkgeval/.julia/packages/BenchmarkTools/ZtsPk/src/execution.jl:330:0 (pc: 2) unknown function (ip: 0x7f6a6c6808d2) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 eval_body at /source/src/interpreter.c:614:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) unknown function (ip: 0x7f6aa0708532) at (unknown file) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 eval_body at /source/src/interpreter.c:614:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:614:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 eval_body at /source/src/interpreter.c:622:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 426) _start at ./client.jl:596:0 (pc: 295) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] true_main at /source/src/jlapi.c:985:29 jl_repl_entrypoint at /source/src/jlapi.c:1152:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7f6abee42249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007f6aa41fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:596 _start() ╎ 1 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ 1 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ 1 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _path::Strin… ╎ 1 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _path:… ╎ ╎ 1 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity), mod:… ╎ ╎ 1 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ 1 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ ╎ 1 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _path::… ╎ ╎ 1 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _… ╎ ╎ ╎ 1 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity),… ╎ ╎ ╎ 1 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ ╎ 1 @BenchmarkTools/….jl:330 tune!(b::BenchmarkTools.Benchmark) ╎ ╎ ╎ 1 @BenchmarkTools/…jl:330 tune!(b::BenchmarkTools.Benchmark, p… ╎ ╎ ╎ 1 @BenchmarkTools/…jl:341 tune!(b::BenchmarkTools.Benchmark, … ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…jl:52 lineartrial(b::BenchmarkTools.Bench… ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…l:53 lineartrial(b::BenchmarkTools.Bench… ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…l:216 _lineartrial(b::BenchmarkTools.Be… ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…:222 _lineartrial(b::BenchmarkTools.Be… ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…:659 var"##sample#152"(::Tuple{}, __p… ╎ ╎ ╎ ╎ ╎ 1 @BenchmarkTools/…:647 var"##core#151"() ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:139 kwcall(::@NamedTuple{executor:… ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:139 kwcall(::@NamedTuple{executor… ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:152 run!(mapping::ModelMapping{P… ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:338 kwcall(::@NamedTuple{tracke… ╎ ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:353 _run_modellist_singleton(o… ╎ ╎ ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…:98 adjust_weather_timesteps_t… ╎ ╎ ╎ ╎ ╎ ╎ 1 @PlantMeteo/…l:56 TimeStepTable{Atmosphere}(ts… ╎ ╎ ╎ ╎ ╎ ╎ 1 @PlantMeteo/…l:56 TimeStepTable{Atmosphere}(t… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:833 collect(itr::Base.Generato… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…tor.jl:45 iterate(::Base.Generator{T… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Tables/….jl:76 iterate(rows::Tables.Named… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…le.jl:452 Tuple(itr::Base.Generato… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…le.jl:488 _totuple(::Type{Tuple},… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:843 collect(itr::Base.Gene… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000752ad55731c0 Total snapshots: 415. Utilization: 0% ╎415 @Base/task.jl:1170 wait_forever() 414╎ 415 @Base/task.jl:1248 wait() [25] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-performance.jl:28 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4326:23 [inlined] ijl_apply_generic at /source/src/gf.c:4564:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 1086265045 (Pool: 1086234512; Big: 30533); GC: 212 PkgEval terminated after 2724.96s: test duration exceeded the time limit