Package evaluation to test Biofilm on Julia 1.14.0-DEV.2457 (6e8868916a*) started at 2026-06-29T04:42:37.762 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.02s ################################################################################ # Installation # Installing Biofilm... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed libaom_jll ────────────────────────── v3.13.3+0 Installed Bzip2_jll ─────────────────────────── v1.0.9+0 Installed libass_jll ────────────────────────── v0.17.4+0 Installed HarfBuzz_jll ──────────────────────── v8.5.1+0 Installed CommonWorldInvalidations ──────────── v1.1.0 Installed Libuuid_jll ───────────────────────── v2.42.0+0 Installed Qt6Base_jll ───────────────────────── v6.10.2+2 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed FastPower ─────────────────────────── v1.3.3 Installed Libtiff_jll ───────────────────────── v4.7.2+0 Installed Functors ──────────────────────────── v0.4.12 Installed Cairo_jll ─────────────────────────── v1.18.7+0 Installed PlotThemes ────────────────────────── v3.3.0 Installed OrderedCollections ────────────────── v1.8.2 Installed Sundials ──────────────────────────── v4.28.0 Installed OrdinaryDiffEqRosenbrock ──────────── v1.22.0 Installed libinput_jll ──────────────────────── v1.28.1+0 Installed Graphite2_jll ─────────────────────── v1.3.16+0 Installed PreallocationTools ────────────────── v1.2.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.12.0 Installed Xorg_libXinerama_jll ──────────────── v1.1.7+0 Installed CpuId ─────────────────────────────── v0.3.1 Installed OrdinaryDiffEqFIRK ────────────────── v1.20.0 Installed EnzymeCore ────────────────────────── v0.8.20 Installed Distances ─────────────────────────── v0.10.12 Installed Xorg_libpciaccess_jll ─────────────── v0.19.0+0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed DiffEqCallbacks ───────────────────── v2.37.0 Installed fzf_jll ───────────────────────────── v0.61.1+0 Installed Fontconfig_jll ────────────────────── v2.17.1+0 Installed NaNMath ───────────────────────────── v1.1.4 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed StaticArrayInterface ──────────────── v1.10.0 Installed Opus_jll ──────────────────────────── v1.6.1+0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed OrdinaryDiffEqQPRK ────────────────── v1.9.0 Installed Ogg_jll ───────────────────────────── v1.3.6+0 Installed libva_jll ─────────────────────────── v2.23.0+0 Installed NonlinearSolveBase ────────────────── v2.19.0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed LinearSolve ───────────────────────── v3.87.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.10.0 Installed Xorg_libxcb_jll ───────────────────── v1.17.1+0 Installed Unzip ─────────────────────────────── v0.2.0 Installed EnumX ─────────────────────────────── v1.0.7 Installed Reexport ──────────────────────────── v1.2.2 Installed InverseFunctions ──────────────────── v0.1.17 Installed Jieko ─────────────────────────────── v0.2.1 Installed Xorg_xcb_util_wm_jll ──────────────── v0.4.2+0 Installed BracketingNonlinearSolve ──────────── v1.12.1 Installed DiffEqBase ────────────────────────── v6.213.0 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.4.2 Installed FFMPEG ────────────────────────────── v0.4.5 Installed Preferences ───────────────────────── v1.5.2 Installed RegistryInstances ─────────────────── v0.1.0 Installed LERC_jll ──────────────────────────── v4.1.0+0 Installed MaybeInplace ──────────────────────── v0.1.5 Installed NonlinearSolve ────────────────────── v4.12.0 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.8.0 Installed SortingAlgorithms ─────────────────── v1.2.3 Installed eudev_jll ─────────────────────────── v3.2.14+0 Installed Grisu ─────────────────────────────── v1.0.2 Installed LLVMOpenMP_jll ────────────────────── v18.1.8+0 Installed Format ────────────────────────────── v1.3.7 Installed libdrm_jll ────────────────────────── v2.4.125+1 Installed EpollShim_jll ─────────────────────── v0.0.20230411+1 (no artifacts on this platform) Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.10.0 Installed Xorg_libICE_jll ───────────────────── v1.1.2+0 Installed RecursiveArrayTools ───────────────── v3.50.0 Installed UnPack ────────────────────────────── v1.0.2 Installed OrdinaryDiffEqLinear ──────────────── v1.11.0 Installed ADTypes ───────────────────────────── v1.22.1 Installed DiffResults ───────────────────────── v1.1.0 Installed URIs ──────────────────────────────── v1.6.1 Installed ManualMemory ──────────────────────── v0.1.8 Installed AbstractTrees ─────────────────────── v0.4.5 Installed MacroTools ────────────────────────── v0.5.16 Installed FillArrays ────────────────────────── v1.16.0 Installed GenericSchur ──────────────────────── v0.5.6 Installed OpenSSH_jll ───────────────────────── v10.3.1+0 Installed DataStructures ────────────────────── v0.18.22 Installed SparseMatrixColorings ─────────────── v0.4.27 Installed DelimitedFiles ────────────────────── v1.9.1 Installed Xorg_xcb_util_jll ─────────────────── v0.4.1+0 Installed UnicodeFun ────────────────────────── v0.4.1 Installed x264_jll ──────────────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed oneTBB_jll ────────────────────────── v2022.3.0+0 Installed StatsBase ─────────────────────────── v0.34.12 Installed Xorg_libXau_jll ───────────────────── v1.0.13+0 Installed SciMLJacobianOperators ────────────── v0.1.14 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed ArrayInterface ────────────────────── v7.27.0 Installed mtdev_jll ─────────────────────────── v1.1.7+0 Installed Xorg_libXfixes_jll ────────────────── v6.0.2+0 Installed Qt6ShaderTools_jll ────────────────── v6.10.2+1 Installed CEnum ─────────────────────────────── v0.5.0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed Expat_jll ─────────────────────────── v2.8.1+0 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.5 Installed StructUtils ───────────────────────── v2.8.2 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed Pixman_jll ────────────────────────── v0.46.4+0 Installed LoggingExtras ─────────────────────── v1.2.0 Installed Libffi_jll ────────────────────────── v3.4.7+0 Installed libdecor_jll ──────────────────────── v0.2.2+0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TerminalLoggers ───────────────────── v0.1.7 Installed IrrationalConstants ───────────────── v0.2.6 Installed Contour ───────────────────────────── v0.6.3 Installed ColorVectorSpace ──────────────────── v0.11.0 Installed Xorg_xcb_util_keysyms_jll ─────────── v0.4.1+0 Installed BitFlags ──────────────────────────── v0.1.10 Installed LeftChildRightSiblingTrees ────────── v0.2.1 Installed libfdk_aac_jll ────────────────────── v2.0.4+0 Installed libpng_jll ────────────────────────── v1.6.58+0 Installed Xorg_libXcursor_jll ───────────────── v1.2.4+0 Installed StableRNGs ────────────────────────── v1.0.4 Installed HTTP ──────────────────────────────── v1.11.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.11.0 Installed IOCapture ─────────────────────────── v1.0.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.10.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.13.0 Installed Scratch ───────────────────────────── v1.3.0 Installed FFMPEG_jll ────────────────────────── v8.1.2+0 Installed SimpleBufferStream ────────────────── v1.2.0 Installed SparseColumnPivotedQR ─────────────── v2.1.2 Installed Setfield ──────────────────────────── v1.1.2 Installed Qt6Svg_jll ────────────────────────── v6.10.2+0 Installed Qt6Declarative_jll ────────────────── v6.10.2+2 Installed NonlinearSolveQuasiNewton ─────────── v1.12.0 Installed OrdinaryDiffEqPRK ─────────────────── v1.9.0 Installed DocStringExtensions ───────────────── v0.9.5 Installed CompositionsBase ──────────────────── v0.1.2 Installed Moshi ─────────────────────────────── v0.3.8 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.10.0 Installed CommonSolve ───────────────────────── v0.2.9 Installed RelocatableFolders ────────────────── v1.0.1 Installed Plots ─────────────────────────────── v1.41.6 Installed Sundials_jll ──────────────────────── v5.2.3+0 Installed ForwardDiff ───────────────────────── v0.10.39 Installed Ghostscript_jll ───────────────────── v9.55.1+0 Installed DifferentiationInterface ──────────── v0.7.18 Installed AliasTables ───────────────────────── v1.1.3 Installed OrdinaryDiffEqStabilizedRK ────────── v1.9.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed JLFzf ─────────────────────────────── v0.1.11 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed ConcurrentUtilities ───────────────── v2.5.1 Installed LineSearch ────────────────────────── v0.1.10 Installed Biofilm ───────────────────────────── v1.2.2 Installed RecipesBase ───────────────────────── v1.3.4 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed SciMLOperators ────────────────────── v1.22.1 Installed OrdinaryDiffEq ────────────────────── v6.107.0 Installed DataAPI ───────────────────────────── v1.16.0 Installed Git_LFS_jll ───────────────────────── v3.7.1+0 Installed libevdev_jll ──────────────────────── v1.13.4+0 Installed OrdinaryDiffEqBDF ─────────────────── v1.14.0 Installed Xorg_libXi_jll ────────────────────── v1.8.3+0 Installed Krylov ────────────────────────────── v0.10.6 Installed OrdinaryDiffEqSymplecticRK ────────── v1.12.0 Installed Wayland_jll ───────────────────────── v1.24.0+0 Installed Colors ────────────────────────────── v0.13.1 Installed SciMLStructures ───────────────────── v1.10.1 Installed Measures ──────────────────────────── v0.3.3 Installed OrdinaryDiffEqLowStorageRK ────────── v1.11.0 Installed FastGaussQuadrature ───────────────── v1.3.0 Installed Xorg_libxkbfile_jll ───────────────── v1.2.0+0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed Latexify ──────────────────────────── v0.16.10 Installed StaticArrays ──────────────────────── v1.9.18 Installed SciMLPublic ───────────────────────── v1.2.1 Installed Libglvnd_jll ──────────────────────── v1.7.1+1 Installed Glib_jll ──────────────────────────── v2.86.3+0 Installed Xorg_xkbcomp_jll ──────────────────── v1.4.7+0 Installed OrdinaryDiffEqDifferentiation ─────── v1.22.0 Installed ColorTypes ────────────────────────── v0.12.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed Documenter ────────────────────────── v1.17.0 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.19.0 Installed Requires ──────────────────────────── v1.3.1 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.16.0 Installed Vulkan_Loader_jll ─────────────────── v1.3.243+0 Installed OrdinaryDiffEqCore ────────────────── v3.1.0 Installed Parsers ───────────────────────────── v2.8.6 Installed JSON ──────────────────────────────── v1.6.1 Installed Xorg_xcb_util_cursor_jll ──────────── v0.1.6+0 Installed Git_jll ───────────────────────────── v2.54.0+0 Installed NonlinearSolveFirstOrder ──────────── v1.11.1 Installed ColorSchemes ──────────────────────── v3.31.0 Installed FiniteDiff ────────────────────────── v2.31.1 Installed OrdinaryDiffEqExplicitRK ──────────── v1.10.0 Installed FastClosures ──────────────────────── v0.3.2 Installed SciMLBase ─────────────────────────── v2.153.1 Installed Xorg_xcb_util_renderutil_jll ──────── v0.3.10+0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed Polyester ─────────────────────────── v0.7.19 Installed Xorg_libXdmcp_jll ─────────────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─────────── v2.47.0+1 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.11.0 Installed Xorg_libSM_jll ────────────────────── v1.2.6+0 Installed OrdinaryDiffEqFeagin ──────────────── v1.9.0 Installed XZ_jll ────────────────────────────── v5.8.3+0 Installed JLLWrappers ───────────────────────── v1.8.0 Installed x265_jll ──────────────────────────── v4.1.0+0 Installed Pango_jll ─────────────────────────── v1.57.1+0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.10.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.12.0 Installed ThreadingUtilities ────────────────── v0.5.6 Installed RecipesPipeline ───────────────────── v0.6.12 Installed OrdinaryDiffEqSDIRK ───────────────── v1.11.0 Installed GR_jll ────────────────────────────── v0.73.26+0 Installed Accessors ─────────────────────────── v0.1.45 Installed Xorg_xtrans_jll ───────────────────── v1.6.0+0 Installed OrdinaryDiffEqDefault ─────────────── v1.14.0 Installed OrdinaryDiffEqVerner ──────────────── v1.11.0 Installed JpegTurbo_jll ─────────────────────── v3.1.5+0 Installed Dbus_jll ──────────────────────────── v1.16.2+0 Installed Adapt ─────────────────────────────── v4.7.0 Installed ExponentialUtilities ──────────────── v1.30.2 Installed RuntimeGeneratedFunctions ─────────── v0.5.21 Installed ConstructionBase ──────────────────── v1.6.0 Installed ExceptionUnwrapping ───────────────── v0.1.11 Installed ProgressLogging ───────────────────── v0.1.6 Installed TranscodingStreams ────────────────── v0.11.3 Installed SymbolicIndexingInterface ─────────── v0.3.49 Installed Libmount_jll ──────────────────────── v2.42.0+0 Installed Xorg_libX11_jll ───────────────────── v1.8.13+0 Installed Compat ────────────────────────────── v4.18.1 Installed StrideArraysCore ──────────────────── v0.5.9 Installed TensorCore ────────────────────────── v0.1.1 Installed Statistics ────────────────────────── v1.11.1 Installed ExproniconLite ────────────────────── v0.10.14 Installed PlotUtils ─────────────────────────── v1.4.4 Installed StatsAPI ──────────────────────────── v1.8.0 Installed TimerOutputs ──────────────────────── v0.5.29 Installed GR ────────────────────────────────── v0.73.26 Installed MbedTLS ───────────────────────────── v1.1.10 Installed PrecompileTools ───────────────────── v1.3.4 Installed Xorg_xcb_util_image_jll ───────────── v0.4.1+0 Installed OpenSSL ───────────────────────────── v1.6.1 Installed xkbcommon_jll ─────────────────────── v1.13.0+0 Installed ProgressMeter ─────────────────────── v1.11.0 Installed GettextRuntime_jll ────────────────── v0.22.4+0 Installed CPUSummary ────────────────────────── v0.2.7 Installed MarkdownAST ───────────────────────── v0.1.3 Installed NLsolve ───────────────────────────── v4.5.1 Installed FriBidi_jll ───────────────────────── v1.0.17+0 Installed GLFW_jll ──────────────────────────── v3.4.1+1 Installed LazilyInitializedFields ───────────── v1.3.0 Installed AMD ───────────────────────────────── v0.5.3 Installed LAME_jll ──────────────────────────── v3.100.3+0 Installed IfElse ────────────────────────────── v0.1.1 Installed libvorbis_jll ─────────────────────── v1.3.8+0 Installed Xorg_libXrender_jll ───────────────── v0.9.12+0 Installed Parameters ────────────────────────── v0.12.3 Installed MuladdMacro ───────────────────────── v0.2.6 Installed PtrArrays ─────────────────────────── v1.4.0 Installed SpecialFunctions ──────────────────── v2.8.0 Installed SciMLLogging ──────────────────────── v1.10.1 Installed Showoff ───────────────────────────── v1.0.3 Installed FixedPointNumbers ─────────────────── v0.8.6 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────────────── v2.28.1010+0 Installed LineSearches ──────────────────────── v7.5.1 Installed Git ───────────────────────────────── v1.5.0 Installed SimpleNonlinearSolve ──────────────── v2.11.0 Installed FreeType2_jll ─────────────────────── v2.14.3+1 Installed PureKLU ───────────────────────────── v1.0.2 Installed Xorg_libXext_jll ──────────────────── v1.3.8+0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.10.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed Xorg_libXrandr_jll ────────────────── v1.5.6+0 Installed Qt6Wayland_jll ────────────────────── v6.10.2+1 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installed OrdinaryDiffEqFunctionMap ─────────── v1.10.0 Installing 83 artifacts Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Xorg_libXinerama 25.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact libdrm 368.0 KiB Installed artifact libass 427.8 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact libva 235.7 KiB Installed artifact Graphite2 120.3 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_libXrandr 97.3 KiB Installed artifact libpng 329.4 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Sundials 2.1 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Pixman 390.8 KiB Installed artifact LAME 292.5 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Dbus 489.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact Ghostscript 31.4 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_libX11 4.8 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact XZ 1.6 MiB Installed artifact Git_LFS 9.7 MiB Installed artifact Pango 2.1 MiB Installed artifact GLFW 187.9 KiB Installed artifact Qt6Wayland 1.4 MiB Installed artifact OpenSSH 4.1 MiB Installed artifact libevdev 117.1 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact eudev 3.9 MiB Installed artifact Libiconv 1.9 MiB Installed artifact xkbcommon 298.7 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact libvorbis 271.0 KiB Installed artifact x265 1.4 MiB Installed artifact mtdev 79.6 KiB Installed artifact Opus 960.9 KiB Installed artifact Xorg_libxkbfile 91.1 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact libaom 6.4 MiB Installed artifact Glib 7.7 MiB Installed artifact Libuuid 3.9 MiB Installed artifact LERC 267.4 KiB Installed artifact Expat 288.6 KiB Installed artifact libdecor 44.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact x264 2.1 MiB Installed artifact FFMPEG 11.9 MiB Installed artifact fzf 3.3 MiB Installed artifact Qt6Svg 386.4 KiB Installed artifact Xorg_xkeyboard_config 545.0 KiB Installed artifact libinput 1.0 MiB Installed artifact Ogg 250.3 KiB Installed artifact Libffi 44.2 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXext 286.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact Libmount 6.9 MiB Installed artifact GR 19.3 MiB Installed artifact Git 50.6 MiB Installed artifact Qt6Declarative 23.8 MiB Installed artifact Qt6Base 23.1 MiB Updating `~/.julia/environments/v1.14/Project.toml` [210d8ceb] + Biofilm v1.2.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.1 [14f7f29c] + AMD v0.5.3 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.27.0 [210d8ceb] + Biofilm v1.2.2 [d1d4a3ce] + BitFlags v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [70df07ce] + BracketingNonlinearSolve v1.12.1 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.9 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.1.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.5 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 ⌅ [2b5f629d] + DiffEqBase v6.213.0 ⌅ [459566f4] + DiffEqCallbacks v2.37.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.17.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.20 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.30.2 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [c87230d0] + 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OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 49.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.5 s ✓ MacroTools 0.5 s ✓ Reexport 0.6 s ✓ TensorCore 0.8 s ✓ ConstructionBase 1.7 s ✓ IrrationalConstants 0.6 s ✓ Measures 0.6 s ✓ StatsAPI 0.6 s ✓ LazilyInitializedFields 1.6 s ✓ Format 0.6 s ✓ CEnum 1.2 s ✓ Functors 0.6 s ✓ Contour 0.5 s ✓ CommonSolve 1.0 s ✓ TranscodingStreams 0.6 s ✓ LaTeXStrings 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 1.1 s ✓ EnzymeCore 0.7 s ✓ StableRNGs 0.5 s ✓ IfElse 0.5 s ✓ PtrArrays 0.5 s ✓ SimpleBufferStream 0.8 s ✓ ANSIColoredPrinters 1.0 s ✓ Grisu 0.7 s ✓ ManualMemory 0.8 s ✓ Adapt 0.6 s ✓ DataAPI 0.6 s ✓ SciMLPublic 3.4 s ✓ ExproniconLite 0.6 s ✓ CommonWorldInvalidations 1.0 s ✓ URIs 0.5 s ✓ FastPower 0.7 s ✓ InverseFunctions 0.6 s ✓ BitFlags 0.6 s ✓ CompositionsBase 0.9 s ✓ AbstractTrees 0.6 s ✓ EnumX 2.0 s ✓ FillArrays 0.6 s ✓ ExprTools 0.5 s ✓ UnPack 0.5 s ✓ ConcreteStructs 1.1 s ✓ OrderedCollections 1.1 s ✓ FunctionWrappers 1.1 s ✓ ADTypes 0.9 s ✓ DocStringExtensions 0.5 s ✓ FastClosures 0.8 s ✓ Unzip 0.5 s ✓ SIMDTypes 0.5 s ✓ IteratorInterfaceExtensions 0.6 s ✓ IOCapture 0.9 s ✓ ProgressLogging 0.7 s ✓ DelimitedFiles 0.7 s ✓ NaNMath 0.9 s ✓ Requires 1.2 s ✓ ConcurrentUtilities 14.8 s ✓ Krylov 1.9 s ✓ GenericSchur 2.3 s ✓ ProgressMeter 2.4 s ✓ AMD 1.1 s ✓ Scratch 1.4 s ✓ LoggingExtras 1.6 s ✓ StructUtils 1.6 s ✓ CpuId 0.9 s ✓ Compat 1.3 s ✓ Preferences 1.5 s ✓ ExceptionUnwrapping 4.1 s ✓ UnicodeFun 1.4 s ✓ CommonSubexpressions 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 5.5 s ✓ RegistryInstances 0.7 s ✓ CodecZlib 2.0 s ✓ Statistics → SparseArraysExt 3.3 s ✓ FixedPointNumbers 1.2 s ✓ Distances 0.6 s ✓ DiffResults 0.7 s ✓ AliasTables 1.1 s ✓ Showoff 1.8 s ✓ ThreadingUtilities 1.0 s ✓ ArrayInterface 1.9 s ✓ Adapt → AdaptSparseArraysExt 1.1 s ✓ GPUArraysCore 0.5 s ✓ EnzymeCore → AdaptExt 0.8 s ✓ Missings 2.9 s ✓ Jieko 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.6 s ✓ InverseFunctions → InverseFunctionsTestExt 4.4 s ✓ OpenSSL 0.6 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1.7 s ✓ MarkdownAST 0.7 s ✓ LeftChildRightSiblingTrees 2.3 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 2.2 s ✓ TimerOutputs 0.7 s ✓ RuntimeGeneratedFunctions 0.7 s ✓ Parameters 0.5 s ✓ FunctionWrappersWrappers 0.5 s ✓ ADTypes → ADTypesConstructionBaseExt 1.7 s ✓ DifferentiationInterface 0.5 s ✓ ADTypes → ADTypesEnzymeCoreExt 1.3 s ✓ LogExpFunctions 1.2 s ✓ RelocatableFolders 1.0 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.5 s ✓ PrecompileTools 1.8 s ✓ JLLWrappers 2.0 s ✓ TruncatedStacktraces 1.9 s ✓ SciMLLogging 2.4 s ✓ Setfield 2.6 s ✓ ColorTypes 1.9 s ✓ Distances → DistancesSparseArraysExt 0.9 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.7 s ✓ MaybeInplace 1.8 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 16.1 s ✓ Moshi 4.6 s ✓ Accessors 1.5 s ✓ TerminalLoggers 0.5 s ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 1.9 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 3.8 s ✓ DataStructures 18.5 s ✓ SparseColumnPivotedQR 13.7 s ✓ StaticArrays 1.9 s ✓ MuladdMacro 3.3 s ✓ RecipesBase 9.6 s ✓ Parsers 2.0 s ✓ Static 13.3 s ✓ SparseMatrixColorings 1.8 s ✓ SciMLStructures 2.7 s ✓ PreallocationTools 1.9 s ✓ Libffi_jll 1.9 s ✓ Xorg_libICE_jll 1.9 s ✓ eudev_jll 2.0 s ✓ mtdev_jll 2.0 s ✓ Bzip2_jll 1.9 s ✓ XZ_jll 1.9 s ✓ OpenSpecFun_jll 1.3 s ✓ Xorg_xtrans_jll 2.0 s ✓ Opus_jll 5.6 s ✓ IntelOpenMP_jll 2.0 s ✓ x265_jll 2.0 s ✓ fzf_jll 1.9 s ✓ libpng_jll 2.0 s ✓ Sundials_jll 5.4 s ✓ oneTBB_jll 1.3 s ✓ EpollShim_jll 2.0 s ✓ Libmount_jll 2.0 s ✓ libfdk_aac_jll 1.9 s ✓ Libuuid_jll 2.1 s ✓ FriBidi_jll 2.0 s ✓ LERC_jll 1.9 s ✓ Git_LFS_jll 1.6 s ✓ Xorg_libXau_jll 1.6 s ✓ Ogg_jll 1.9 s ✓ libevdev_jll 1.8 s ✓ OpenSSH_jll 1.6 s ✓ LAME_jll 1.4 s ✓ Graphite2_jll 1.5 s ✓ x264_jll 1.9 s ✓ Xorg_libpciaccess_jll 1.9 s ✓ LLVMOpenMP_jll 2.0 s ✓ Libiconv_jll 2.0 s ✓ MbedTLS_jll 2.0 s ✓ libaom_jll 2.0 s ✓ Xorg_libXdmcp_jll 2.0 s ✓ Expat_jll 2.0 s ✓ JpegTurbo_jll 1.2 s ✓ ColorTypes → StyledStringsExt 5.3 s ✓ Colors 1.6 s ✓ ColorVectorSpace 1.1 s ✓ FiniteDiff 1.8 s ✓ MaybeInplace → MaybeInplaceSparseArraysExt 47.6 s ✓ ExponentialUtilities 2.1 s ✓ Accessors → TestExt 2.2 s ✓ Accessors → LinearAlgebraExt 1.5 s ✓ SortingAlgorithms 2.4 s ✓ SparseColumnPivotedQR → SparseColumnPivotedQRAMDExt 1.8 s ✓ StaticArrays → StaticArraysStatisticsExt 1.8 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.8 s ✓ Adapt → AdaptStaticArraysExt 2.2 s ✓ FillArrays → FillArraysStaticArraysExt 1.9 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 2.1 s ✓ Accessors → StaticArraysExt 58.7 s ✓ PureKLU 6.7 s ✓ JSON 1.1 s ✓ BitTwiddlingConvenienceFunctions 2.9 s ✓ CPUSummary 3.3 s ✓ StaticArrayInterface 2.7 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1.9 s ✓ Xorg_libSM_jll 2.0 s ✓ FreeType2_jll 5.0 s ✓ SpecialFunctions 2.4 s ✓ JLFzf  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 9.5 s ✓ MKL_jll 2.1 s ✓ libvorbis_jll 2.1 s ✓ libinput_jll 1.9 s ✓ libdrm_jll 1.9 s ✓ Pixman_jll 2.0 s ✓ GettextRuntime_jll 2.5 s ✓ MbedTLS 2.1 s ✓ Xorg_libxcb_jll 2.0 s ✓ Dbus_jll 2.2 s ✓ Git_jll 2.2 s ✓ Wayland_jll 2.2 s ✓ Ghostscript_jll 2.2 s ✓ Libtiff_jll 3.7 s ✓ SparseMatrixColorings → SparseMatrixColoringsColorsExt 9.4 s ✓ ColorSchemes 1.9 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 2.0 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 7.8 s ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 4.8 s ✓ SciMLOperators 3.6 s ✓ SymbolicIndexingInterface 5.8 s ✓ StatsBase 2.0 s ✓ PolyesterWeave 2.2 s ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1.3 s ✓ CloseOpenIntervals 1.5 s ✓ LayoutPointers 2.3 s ✓ Fontconfig_jll 4.3 s ✓ FastGaussQuadrature 1.1 s ✓ DiffRules 1.5 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.0 s ✓ Glib_jll 24.9 s ✓ HTTP 2.1 s ✓ Xorg_xcb_util_jll 2.1 s ✓ Xorg_libX11_jll 1.1 s ✓ Git 6.1 s ✓ Latexify 19.7 s ✓ PlotUtils 1.2 s ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2.5 s ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 8.0 s ✓ RecursiveArrayTools 2.0 s ✓ StrideArraysCore 8.0 s ✓ ForwardDiff 2.0 s ✓ Xorg_xcb_util_renderutil_jll 2.0 s ✓ Xorg_xcb_util_wm_jll 2.4 s ✓ Xorg_xcb_util_image_jll 2.0 s ✓ Xorg_xcb_util_keysyms_jll 2.0 s ✓ Xorg_libXfixes_jll 2.0 s ✓ Xorg_libXrender_jll 2.0 s ✓ Xorg_libXext_jll 2.2 s ✓ Xorg_libxkbfile_jll 50.9 s ✓ Documenter 3.3 s ✓ Latexify → SparseArraysExt 10.4 s ✓ PlotThemes 9.1 s ✓ RecipesPipeline 2.9 s ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1.7 s ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 2.5 s ✓ Polyester 2.5 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 1.5 s ✓ FastPower → FastPowerForwardDiffExt 1.8 s ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2.8 s ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2.4 s ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2.1 s ✓ Xorg_xcb_util_cursor_jll 1.9 s ✓ Xorg_libXcursor_jll 2.0 s ✓ Xorg_libXrandr_jll 2.1 s ✓ Xorg_libXinerama_jll 2.2 s ✓ Xorg_libXi_jll 2.2 s ✓ Cairo_jll 2.0 s ✓ libva_jll 2.0 s ✓ Libglvnd_jll 2.0 s ✓ Xorg_xkbcomp_jll 33.0 s ✓ SciMLBase 2.0 s ✓ FastBroadcast 2.7 s ✓ NLSolversBase 2.2 s ✓ HarfBuzz_jll 1.4 s ✓ Xorg_xkeyboard_config_jll 5.1 s ✓ SciMLBase → SciMLBaseForwardDiffExt 4.0 s ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 22.2 s ✓ LinearSolve 1.8 s ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2.6 s ✓ LineSearches 1.9 s ✓ libass_jll 1.5 s ✓ Pango_jll 1.8 s ✓ xkbcommon_jll 9.5 s ✓ SciMLJacobianOperators 23.5 s ✓ LinearSolve → LinearSolveSparseArraysExt 9.4 s ✓ LinearSolve → LinearSolveForwardDiffExt 3.1 s ✓ NLsolve 2.3 s ✓ FFMPEG_jll 2.0 s ✓ Vulkan_Loader_jll 2.0 s ✓ libdecor_jll 14.6 s ✓ LineSearch 20.8 s ✓ NonlinearSolveBase 6.0 s ✓ LinearSolve → LinearSolveEnzymeExt 1.2 s ✓ FFMPEG 2.1 s ✓ Qt6Base_jll 2.1 s ✓ GLFW_jll 3.9 s ✓ LineSearch → LineSearchLineSearchesExt 5.6 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 5.8 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 5.7 s ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4.1 s ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 12.9 s ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 10.7 s ✓ BracketingNonlinearSolve 2.2 s ✓ Qt6ShaderTools_jll 2.2 s ✓ Qt6Svg_jll 2.5 s ✓ GR_jll 33.9 s ✓ NonlinearSolveQuasiNewton 19.4 s ✓ NonlinearSolveSpectralMethods 58.1 s ✓ NonlinearSolveFirstOrder 4.9 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 9.8 s ✓ DiffEqBase 2.5 s ✓ Qt6Declarative_jll 8.1 s ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 5.2 s ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 21.6 s ✓ SimpleNonlinearSolve 6.0 s ✓ DiffEqBase → DiffEqBaseSparseArraysExt 10.8 s ✓ DiffEqBase → DiffEqBaseForwardDiffExt 13.7 s ✓ OrdinaryDiffEqCore 2.0 s ✓ Qt6Wayland_jll 43.7 s ✓ NonlinearSolve 24.7 s ✓ Sundials 6.9 s ✓ DiffEqCallbacks 5.2 s ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 6.2 s ✓ GR 13.9 s ✓ NonlinearSolve → NonlinearSolveNLsolveExt 14.4 s ✓ NonlinearSolve → NonlinearSolveSundialsExt 7.9 s ✓ OrdinaryDiffEqStabilizedRK 5.4 s ✓ OrdinaryDiffEqFunctionMap 58.0 s ✓ OrdinaryDiffEqVerner 7.7 s ✓ OrdinaryDiffEqQPRK 7.9 s ✓ OrdinaryDiffEqSymplecticRK 10.7 s ✓ OrdinaryDiffEqLowOrderRK 8.0 s ✓ OrdinaryDiffEqFeagin 10.2 s ✓ OrdinaryDiffEqSSPRK 8.4 s ✓ OrdinaryDiffEqRKN 8.5 s ✓ OrdinaryDiffEqHighOrderRK 7.6 s ✓ OrdinaryDiffEqExplicitRK 15.9 s ✓ OrdinaryDiffEqTsit5 13.3 s ✓ OrdinaryDiffEqLinear 7.9 s ✓ OrdinaryDiffEqPRK 11.1 s ✓ OrdinaryDiffEqLowStorageRK 15.1 s ✓ OrdinaryDiffEqDifferentiation 110.6 s ✓ Plots 8.3 s ✓ OrdinaryDiffEqAdamsBashforthMoulton 7.0 s ✓ OrdinaryDiffEqNordsieck 9.5 s ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 15.0 s ✓ OrdinaryDiffEqExtrapolation 51.4 s ✓ OrdinaryDiffEqRosenbrock 17.6 s ✓ OrdinaryDiffEqExponentialRK 19.7 s ✓ OrdinaryDiffEqNonlinearSolve 18.5 s ✓ OrdinaryDiffEqIMEXMultistep 18.3 s ✓ OrdinaryDiffEqStabilizedIRK 19.5 s ✓ OrdinaryDiffEqPDIRK 20.9 s ✓ OrdinaryDiffEqSDIRK 66.9 s ✓ OrdinaryDiffEqFIRK 36.7 s ✓ OrdinaryDiffEqBDF 79.0 s ✓ OrdinaryDiffEqDefault 27.6 s ✓ OrdinaryDiffEq 77.9 s ✓ Biofilm 354 dependencies successfully precompiled in 2144 seconds. 39 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 2165.07s ################################################################################ # Testing # Testing Biofilm Status `/tmp/jl_GhdqPZ/Project.toml` [7d9f7c33] Accessors v0.1.45 [210d8ceb] Biofilm v1.2.2 ⌅ [459566f4] DiffEqCallbacks v2.37.0 [e30172f5] Documenter v1.17.0 [b964fa9f] LaTeXStrings v1.4.0 [442fdcdd] Measures v0.3.3 ⌅ [1dea7af3] OrdinaryDiffEq v6.107.0 ⌅ [d96e819e] Parameters v0.12.3 [91a5bcdd] Plots v1.41.6 [aea7be01] PrecompileTools v1.3.4 [92933f4c] ProgressMeter v1.11.0 [10745b16] Statistics v1.11.1 ⌅ [c3572dad] Sundials v4.28.0 [5d786b92] TerminalLoggers v0.1.7 [3a884ed6] UnPack v1.0.2 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GhdqPZ/Manifest.toml` [47edcb42] ADTypes v1.22.1 [14f7f29c] AMD v0.5.3 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.27.0 [210d8ceb] Biofilm v1.2.2 [d1d4a3ce] BitFlags v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [70df07ce] BracketingNonlinearSolve v1.12.1 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.9 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.1.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.5 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [2b5f629d] DiffEqBase v6.213.0 ⌅ [459566f4] DiffEqCallbacks v2.37.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.30.2 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.5 ⌅ [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.3.0 [a4df4552] FastPower v1.3.3 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.1 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 ⌅ [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] Functors v0.4.12 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.26 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [42e2da0e] Grisu v1.0.2 ⌅ [cd3eb016] HTTP v1.11.0 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [ae98c720] Jieko v0.2.1 [ba0b0d4f] Krylov v0.10.6 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 ⌅ [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [87fe0de2] LineSearch v0.1.10 ⌃ [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.87.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.3 [bb5d69b7] MaybeInplace v0.1.5 [739be429] MbedTLS v1.1.10 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.8 [46d2c3a1] MuladdMacro v0.2.6 ⌅ [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.4 ⌃ [8913a72c] NonlinearSolve v4.12.0 ⌃ [be0214bd] NonlinearSolveBase v2.19.0 ⌅ [5959db7a] NonlinearSolveFirstOrder v1.11.1 ⌃ [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 ⌃ [26075421] NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌅ [1dea7af3] OrdinaryDiffEq v6.107.0 ⌅ [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.10.0 ⌅ [6ad6398a] OrdinaryDiffEqBDF v1.14.0 ⌅ [bbf590c4] OrdinaryDiffEqCore v3.1.0 ⌅ [50262376] OrdinaryDiffEqDefault v1.14.0 ⌅ [4302a76b] OrdinaryDiffEqDifferentiation v1.22.0 ⌅ [9286f039] OrdinaryDiffEqExplicitRK v1.10.0 ⌅ [e0540318] OrdinaryDiffEqExponentialRK v1.12.0 ⌅ [becaefa8] OrdinaryDiffEqExtrapolation v1.13.0 ⌅ [5960d6e9] OrdinaryDiffEqFIRK v1.20.0 ⌅ [101fe9f7] OrdinaryDiffEqFeagin v1.9.0 ⌅ [d3585ca7] OrdinaryDiffEqFunctionMap v1.10.0 ⌅ [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.10.0 ⌅ [9f002381] OrdinaryDiffEqIMEXMultistep v1.11.0 ⌅ [521117fe] OrdinaryDiffEqLinear v1.11.0 ⌅ [1344f307] OrdinaryDiffEqLowOrderRK v1.10.0 ⌅ [b0944070] OrdinaryDiffEqLowStorageRK v1.11.0 ⌅ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.19.0 ⌅ [c9986a66] OrdinaryDiffEqNordsieck v1.8.0 ⌅ [5dd0a6cf] OrdinaryDiffEqPDIRK v1.10.0 ⌅ [5b33eab2] OrdinaryDiffEqPRK v1.9.0 ⌅ [04162be5] OrdinaryDiffEqQPRK v1.9.0 ⌅ [af6ede74] OrdinaryDiffEqRKN v1.11.0 ⌅ [43230ef6] OrdinaryDiffEqRosenbrock v1.22.0 ⌅ [2d112036] OrdinaryDiffEqSDIRK v1.11.0 ⌅ [669c94d9] OrdinaryDiffEqSSPRK v1.12.0 ⌅ [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.10.0 ⌅ [358294b1] OrdinaryDiffEqStabilizedRK v1.9.0 ⌅ [fa646aed] OrdinaryDiffEqSymplecticRK v1.12.0 ⌅ [b1df2697] OrdinaryDiffEqTsit5 v1.10.0 ⌅ [79d7bb75] OrdinaryDiffEqVerner v1.11.0 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.6 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v1.2.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [0c0d3e7f] PureKLU v1.0.2 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 ⌅ [731186ca] RecursiveArrayTools v3.50.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.21 [94e857df] SIMDTypes v0.1.0 ⌅ [0bca4576] SciMLBase v2.153.1 [19f34311] SciMLJacobianOperators v0.1.14 ⌅ [a6db7da4] SciMLLogging v1.10.1 [c0aeaf25] SciMLOperators v1.22.1 [431bcebd] SciMLPublic v1.2.1 [53ae85a6] SciMLStructures v1.10.1 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [992d4aef] Showoff v1.0.3 [777ac1f9] SimpleBufferStream v1.2.0 ⌃ [727e6d20] SimpleNonlinearSolve v2.11.0 [a2af1166] SortingAlgorithms v1.2.3 [a57abbd0] SparseColumnPivotedQR v2.1.2 [0a514795] SparseMatrixColorings v0.4.27 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.4.2 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [7792a7ef] StrideArraysCore v0.5.9 [ec057cc2] StructUtils v2.8.2 ⌅ [c3572dad] Sundials v4.28.0 [2efcf032] SymbolicIndexingInterface v0.3.49 [62fd8b95] TensorCore 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Running test_zeroLL ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 10 | 0.08, 0.08 | 0, 0 | 10 0.100 | 23.3 | 59.5 | 0.08, 0.08 | 59.2, 59.5 | 63.4 0.200 | 60 | 64.6 | 0.08, 0.08 | 58.4, 64.5 | 305 0.300 | 159 | 34.6 | 0.08, 0.08 | 4.72, 34.1 | 672 0.400 | 254 | 2.99 | 0.08, 0.08 | 0.246, 2.91 | 459 0.500 | 257 | 2.93 | 0.08, 0.08 | 0.543, 2.87 | 355 0.600 | 257 | 2.92 | 0.08, 0.08 | 0.683, 2.87 | 324 0.700 | 257 | 2.93 | 0.08, 0.08 | 0.736, 2.87 | 314 0.800 | 257 | 2.93 | 0.08, 0.08 | 0.757, 2.87 | 310 0.900 | 257 | 2.93 | 0.08, 0.08 | 0.76, 2.88 | 310 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 1.000 | 257 | 2.93 | 0.08, 0.08 | 0.762, 2.88 | 309 Checking result Running test_S_top ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 10 | 0.08, 0.08 | 0, 0 | 10 0.100 | 23.3 | 59.4 | 0.08, 0.08 | 57.9, 58.1 | 62 0.200 | 59.9 | 63.4 | 0.08, 0.08 | 53.8, 55.5 | 302 0.300 | 158 | 33.7 | 0.08, 0.08 | 3.27, 26.3 | 653 0.400 | 253 | 3.02 | 0.08, 0.08 | 0.184, 1.88 | 426 0.500 | 256 | 2.96 | 0.08, 0.08 | 0.43, 1.89 | 315 0.600 | 257 | 2.95 | 0.08, 0.08 | 0.562, 1.9 | 281 0.700 | 257 | 2.95 | 0.08, 0.08 | 0.618, 1.91 | 268 0.800 | 257 | 2.95 | 0.08, 0.08 | 0.646, 1.92 | 262 0.900 | 257 | 2.95 | 0.08, 0.08 | 0.659, 1.92 | 260 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 1.000 | 257 | 2.95 | 0.08, 0.08 | 0.667, 1.92 | 258 Checking result Running test_Diffusion ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.53, 10.6 | 173 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.51, 11.5 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 11.9 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 12 | 174 Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 43.9 | 12.2 | 0.08, 0.08 | 1.5, 12.1 | 174 Nz = 10, Error = 9.621e-02 Nz = 25, Error = 1.756e-02 Nz = 50, Error = 4.571e-03 Nz = 75, Error = 2.058e-03 Nz = 100, Error = 1.165e-03 Order = 1.918 Checking result Running test_SteadyState ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 5 1.000 | 46.1 | 6.49 | 0.08, 0.08 | 6.49, 6.49 | 2.75e+03 2.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 3.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 4.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 5.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 6.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 7.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 8.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 9.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 10.000 | 46.8 | 6.47 | 0.08, 0.08 | 6.47, 6.47 | 2.72e+03 % difference = 0.004475120995842444 Checking result Running test_TimeIntegration ============== Starting Solver ... Time | Bug | Oxygen | min,max( Bug) | min,max( Oxygen) | Lf [μm] 0.000 | 10 | 25 | 0.08, 0.08 | 0, 0 | 50 1.000 | 0.0228 | 100 | 0.08, 0.08 | 1.46e-85, 0.0717 | 25 Maximum relative error = 1.8393728836940682e-7 Checking result Running test_commandLineArgs ============== Unit Tests: Error During Test at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/runtests.jl:11 Got exception outside of a @test LoadError: Parameter file should contain a NamedTuple with name `p` Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] process_command_line_args(ARGS::Vector{String}) @ Biofilm ~/.julia/packages/Biofilm/uK5mS/src/parameters.jl:272 [3] julia_main() @ Biofilm ~/.julia/packages/Biofilm/uK5mS/src/Biofilm.jl:19 [4] top-level scope @ ~/.julia/packages/Biofilm/uK5mS/test/test_commandLineArgs.jl:4 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [6] top-level scope @ ~/.julia/packages/Biofilm/uK5mS/test/runtests.jl:16 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [8] macro expansion @ ~/.julia/packages/Biofilm/uK5mS/test/runtests.jl:42 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core boot.jl:522 [12] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [13] _start() @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/test_commandLineArgs.jl:4 Test Summary: | Pass Error Total Time Unit Tests | 5 1 6 2m26.6s RNG of the outermost testset: Random.Xoshiro(0xbd680ab3ae8e1332, 0xe7746935473b4560, 0x397b523ca64563e9, 0x284c0641c365ae57, 0xad420d4f1b629b40) ERROR: LoadError: Some tests did not pass: 5 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Biofilm/uK5mS/test/runtests.jl:11 Testing failed after 220.79s ERROR: LoadError: Package Biofilm errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2488.0s: package tests unexpectedly errored