Package evaluation to test VCFTools on Julia 1.14.0-DEV.2435 (e1b2c72e96*) started at 2026-06-25T19:37:46.363 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.75s ################################################################################ # Installation # Installing VCFTools... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [a620830f] + VCFTools v0.2.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.44 [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.2.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.8 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.8 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.38 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3bb67fe8] + TranscodingStreams v0.11.3 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 6.5 s ✓ VCFTools 1 dependency successfully precompiled in 8 seconds. 114 already precompiled. Precompilation completed after 36.17s ################################################################################ # Testing # Testing VCFTools Status `/tmp/jl_YAM0S7/Project.toml` [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.127 [09f84164] HypothesisTests v0.11.8 [92933f4c] ProgressMeter v1.11.0 [276daf66] SpecialFunctions v2.8.0 [2913bbd2] StatsBase v0.34.12 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YAM0S7/Manifest.toml` [7d9f7c33] Accessors v0.1.44 [66dad0bd] AliasTables v1.1.3 [67c07d97] Automa v1.2.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.8 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.8 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.38 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.0 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+0 [deac9b47] LibCURL_jll v8.20.0+1 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time H-W test | 1 1 2.4s Test Summary: | Pass Total Time openvcf | 4 4 2.2s Test Summary: | Pass Total Time nrecords(vcf) | 1 1 2.8s Test Summary: | Pass Total Time nsamples(vcf) | 1 1 0.1s Test Summary: | Pass Total Time gtstats(record) | 4 4 3.6s ┌ Warning: accessing `Type.name` is deprecated without replacement. If for detection, use `Base.isType(x)`. │ caller = ProgressMeter.Progress(n::Int64, dt::Int64, desc::String, barlen::Nothing, color::Symbol, output::Base.PipeEndpoint; offset::Int64) at deprecated.jl:1 └ @ ProgressMeter ~/.julia/packages/ProgressMeter/N660J/src/deprecated.jl:1 ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Progress: 0%| | ETA: 0:47:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 16.325533 seconds (7.04 M allocations: 444.658 MiB, 1.56% gc time, 94.62% compilation time: 6% of which was recompilation) 0.528847 seconds (2.37 M allocations: 141.252 MiB, 6.81% gc time, 12.73% compilation time: <1% of which was recompilation) Progress: 0%| | ETA: 0:45:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 4.567169 seconds (3.20 M allocations: 196.526 MiB, 1.13% gc time, 87.36% compilation time) 0.558925 seconds (2.37 M allocations: 141.205 MiB, 3.61% gc time) Test Summary: | Pass Total Time gtstats(vcf) | 12 12 25.8s Test Summary: | Pass Total Time get sampleID | 4 4 0.1s Test Summary: | Pass Total Time Fishers exact HWE test | 20 20 0.0s Test Summary: | Pass Total Time filter_genotype(record) | 9 9 2.1s Test Summary: | Pass Total Time filter_genotype(file) | 4068 4068 2.7s Test Summary: | Pass Total Time flip_gt_allele | 4 4 1.1s Test Summary: | Pass Total Time match_gt_allele | 4 4 0.1s Test Summary: | Pass Total Time binomial_proportion_test | 2 2 1.0s [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:21:17 Progress: 0%|▏ | ETA: 0:22:08 Progress: 0%|▏ | ETA: 0:21:35 Progress: 0%|▏ | ETA: 0:21:09 Progress: 0%|▏ | ETA: 0:20:53 Progress: 0%|▎ | ETA: 0:21:14 Progress: 1%|▎ | ETA: 0:21:02 Progress: 1%|▎ | ETA: 0:20:54 Progress: 1%|▎ | ETA: 0:20:49 Progress: 1%|▍ | ETA: 0:21:07 Progress: 1%|▍ | ETA: 0:20:58 Progress: 1%|▍ | ETA: 0:20:51 Progress: 1%|▌ | ETA: 0:20:44 Progress: 1%|▌ | ETA: 0:20:51 Progress: 1%|▌ | ETA: 0:20:45 Progress: 1%|▌ | ETA: 0:20:41 Progress: 1%|▋ | ETA: 0:20:36 Progress: 1%|▋ | ETA: 0:20:43 Progress: 2%|▋ | ETA: 0:20:40 Progress: 2%|▋ | ETA: 0:20:37 Progress: 2%|▊ | ETA: 0:20:32 Progress: 2%|▊ | ETA: 0:20:35 Progress: 2%|▊ | ETA: 0:20:32 Progress: 2%|▉ | ETA: 0:20:30 Progress: 2%|▉ | ETA: 0:20:27 Progress: 2%|▉ | ETA: 0:20:24 Progress: 2%|▉ | ETA: 0:20:27 Progress: 2%|█ | ETA: 0:20:24 Progress: 2%|█ | ETA: 0:20:22 Progress: 2%|█ | ETA: 0:20:20 Progress: 3%|█ | ETA: 0:20:23 Progress: 3%|█▏ | ETA: 0:20:20 Progress: 3%|█▏ | ETA: 0:20:17 Progress: 3%|█▏ | ETA: 0:20:14 Progress: 3%|█▎ | ETA: 0:20:15 Progress: 3%|█▎ | ETA: 0:20:11 Progress: 3%|█▎ | ETA: 0:20:09 Progress: 3%|█▎ | ETA: 0:20:06 Progress: 3%|█▍ | ETA: 0:20:08 Progress: 3%|█▍ | ETA: 0:20:05 Progress: 3%|█▍ | ETA: 0:20:03 Progress: 3%|█▍ | ETA: 0:20:01 Progress: 4%|█▌ | ETA: 0:20:02 Progress: 4%|█▌ | ETA: 0:20:00 Progress: 4%|█▌ | ETA: 0:19:58 Progress: 4%|█▋ | ETA: 0:19:56 Progress: 4%|█▋ | ETA: 0:19:56 Progress: 4%|█▋ | ETA: 0:19:55 Progress: 4%|█▋ | ETA: 0:19:54 Progress: 4%|█▊ | ETA: 0:19:52 Progress: 4%|█▊ | ETA: 0:19:50 Progress: 4%|█▊ | ETA: 0:19:53 Progress: 4%|█▊ | ETA: 0:19:51 Progress: 4%|█▉ | ETA: 0:19:49 Progress: 5%|█▉ | ETA: 0:19:47 Progress: 5%|█▉ | ETA: 0:19:48 Progress: 5%|██ | ETA: 0:19:46 Progress: 5%|██ | ETA: 0:19:44 Progress: 5%|██ | ETA: 0:19:42 Progress: 5%|██ | ETA: 0:19:44 Progress: 5%|██▏ | ETA: 0:19:43 Progress: 5%|██▏ | ETA: 0:19:41 Progress: 5%|██▏ | ETA: 0:19:39 Progress: 5%|██▏ | ETA: 0:19:39 Progress: 5%|██▎ | ETA: 0:19:38 Progress: 6%|██▎ | ETA: 0:19:36 Progress: 6%|██▎ | ETA: 0:19:34 Progress: 6%|██▍ | ETA: 0:19:34 Progress: 6%|██▍ | ETA: 0:19:32 Progress: 6%|██▍ | ETA: 0:19:31 Progress: 6%|██▍ | ETA: 0:19:29 Progress: 6%|██▌ | ETA: 0:19:28 Progress: 6%|██▌ | ETA: 0:19:28 Progress: 6%|██▌ | ETA: 0:19:26 Progress: 6%|██▋ | ETA: 0:19:25 Progress: 6%|██▋ | ETA: 0:19:23 Progress: 6%|██▋ | ETA: 0:19:24 Progress: 7%|██▋ | ETA: 0:19:22 Progress: 7%|██▊ | ETA: 0:19:20 Progress: 7%|██▊ | ETA: 0:19:19 Progress: 7%|██▊ | ETA: 0:19:20 Progress: 7%|██▊ | ETA: 0:19:18 Progress: 7%|██▉ | ETA: 0:19:17 Progress: 7%|██▉ | ETA: 0:19:15 Progress: 7%|██▉ | ETA: 0:19:15 Progress: 7%|███ | ETA: 0:19:14 Progress: 7%|███ | ETA: 0:19:12 Progress: 7%|███ | ETA: 0:19:11 Progress: 7%|███ | ETA: 0:19:11 Progress: 8%|███▏ | ETA: 0:19:09 Progress: 8%|███▏ | ETA: 0:19:08 Progress: 8%|███▏ | ETA: 0:19:06 Progress: 8%|███▏ | ETA: 0:19:05 Progress: 8%|███▎ | ETA: 0:19:06 Progress: 8%|███▎ | ETA: 0:19:04 Progress: 8%|███▎ | ETA: 0:19:02 Progress: 8%|███▍ | ETA: 0:19:01 Progress: 8%|███▍ | ETA: 0:19:01 Progress: 8%|███▍ | ETA: 0:19:00 Progress: 8%|███▍ | ETA: 0:18:59 Progress: 8%|███▌ | ETA: 0:18:57 Progress: 9%|███▌ | ETA: 0:18:57 Progress: 9%|███▌ | ETA: 0:18:55 Progress: 9%|███▌ | ETA: 0:18:54 Progress: 9%|███▋ | ETA: 0:18:52 Progress: 9%|███▋ | ETA: 0:18:51 Progress: 9%|███▋ | ETA: 0:18:51 Progress: 9%|███▊ | ETA: 0:18:50 Progress: 9%|███▊ | ETA: 0:18:48 Progress: 9%|███▊ | ETA: 0:18:47 Progress: 9%|███▊ | ETA: 0:18:47 Progress: 9%|███▉ | ETA: 0:18:45 Progress: 9%|███▉ | ETA: 0:18:44 Progress: 10%|███▉ | ETA: 0:18:42 Progress: 10%|████ | ETA: 0:18:41 Progress: 10%|████ | ETA: 0:18:39 Progress: 10%|████ | ETA: 0:18:37 Progress: 10%|████ | ETA: 0:18:35 Progress: 10%|████▏ | ETA: 0:18:35 Progress: 10%|████▏ | ETA: 0:18:33 Progress: 10%|████▏ | ETA: 0:18:32 Progress: 10%|████▎ | ETA: 0:18:31 Progress: 10%|████▎ | ETA: 0:18:31 Progress: 100%|█████████████████████████████████████████| Time: 0:02:07 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 22:47:30 Progress: 18%|███████▍ | ETA: 0:09:14 Progress: 36%|██████████████▊ | ETA: 0:03:39 Progress: 55%|██████████████████████▌ | ETA: 0:01:42 Progress: 74%|██████████████████████████████▍ | ETA: 0:00:44 Progress: 94%|██████████████████████████████████████▌ | ETA: 0:00:08 Progress: 100%|█████████████████████████████████████████| Time: 0:02:06 [ Info: 823 records are matched 266.435272 seconds (2.01 G allocations: 106.067 GiB, 7.11% gc time, 0.53% compilation time: <1% of which was recompilation) [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:18:30 Progress: 0%|▏ | ETA: 0:18:31 Progress: 0%|▏ | ETA: 0:19:17 Progress: 0%|▏ | ETA: 0:18:52 Progress: 0%|▎ | ETA: 0:18:49 Progress: 1%|▎ | ETA: 0:18:40 Progress: 1%|▎ | ETA: 0:18:52 Progress: 1%|▎ | ETA: 0:18:52 Progress: 1%|▍ | ETA: 0:18:51 Progress: 1%|▍ | ETA: 0:18:47 Progress: 1%|▍ | ETA: 0:18:57 Progress: 1%|▌ | ETA: 0:18:53 Progress: 1%|▌ | ETA: 0:18:51 Progress: 1%|▌ | ETA: 0:18:49 Progress: 1%|▌ | ETA: 0:18:55 Progress: 1%|▋ | ETA: 0:18:53 Progress: 2%|▋ | ETA: 0:18:51 Progress: 2%|▋ | ETA: 0:18:48 Progress: 2%|▊ | ETA: 0:18:53 Progress: 2%|▊ | ETA: 0:18:51 Progress: 2%|▊ | ETA: 0:18:49 Progress: 2%|▊ | ETA: 0:18:47 Progress: 2%|▉ | ETA: 0:18:53 Progress: 2%|▉ | ETA: 0:18:53 Progress: 2%|▉ | ETA: 0:18:50 Progress: 2%|█ | ETA: 0:18:44 Progress: 2%|█ | ETA: 0:18:45 Progress: 3%|█ | ETA: 0:18:43 Progress: 3%|█▏ | ETA: 0:18:40 Progress: 3%|█▏ | ETA: 0:18:36 Progress: 3%|█▏ | ETA: 0:18:22 Progress: 3%|█▎ | ETA: 0:18:04 Progress: 3%|█▎ | ETA: 0:17:47 Progress: 3%|█▍ | ETA: 0:17:35 Progress: 3%|█▍ | ETA: 0:17:21 Progress: 3%|█▍ | ETA: 0:17:07 Progress: 4%|█▌ | ETA: 0:16:57 Progress: 4%|█▌ | ETA: 0:16:45 Progress: 4%|█▋ | ETA: 0:16:36 Progress: 4%|█▋ | ETA: 0:16:26 Progress: 4%|█▊ | ETA: 0:16:16 Progress: 4%|█▊ | ETA: 0:16:17 Progress: 4%|█▊ | ETA: 0:16:17 Progress: 4%|█▉ | ETA: 0:16:18 Progress: 5%|█▉ | ETA: 0:16:18 Progress: 5%|█▉ | ETA: 0:16:22 Progress: 5%|██ | ETA: 0:16:22 Progress: 5%|██ | ETA: 0:16:23 Progress: 5%|██ | ETA: 0:16:23 Progress: 5%|██ | ETA: 0:16:27 Progress: 5%|██▏ | ETA: 0:16:27 Progress: 5%|██▏ | ETA: 0:16:28 Progress: 5%|██▏ | ETA: 0:16:29 Progress: 5%|██▎ | ETA: 0:16:30 Progress: 6%|██▎ | ETA: 0:16:25 Progress: 6%|██▎ | ETA: 0:16:24 Progress: 6%|██▍ | ETA: 0:16:25 Progress: 6%|██▍ | ETA: 0:16:26 Progress: 6%|██▍ | ETA: 0:16:26 Progress: 6%|██▌ | ETA: 0:16:26 Progress: 6%|██▌ | ETA: 0:16:28 Progress: 6%|██▌ | ETA: 0:16:28 Progress: 6%|██▋ | ETA: 0:16:27 Progress: 6%|██▋ | ETA: 0:16:27 Progress: 6%|██▋ | ETA: 0:16:28 Progress: 7%|██▋ | ETA: 0:16:28 Progress: 7%|██▊ | ETA: 0:16:27 Progress: 7%|██▊ | ETA: 0:16:26 Progress: 7%|██▊ | ETA: 0:16:27 Progress: 7%|██▉ | ETA: 0:16:27 Progress: 7%|██▉ | ETA: 0:16:26 Progress: 7%|██▉ | ETA: 0:16:25 Progress: 7%|███ | ETA: 0:16:26 Progress: 7%|███ | ETA: 0:16:26 Progress: 7%|███ | ETA: 0:16:25 Progress: 7%|███ | ETA: 0:16:25 Progress: 8%|███▏ | ETA: 0:16:26 Progress: 8%|███▏ | ETA: 0:16:25 Progress: 8%|███▏ | ETA: 0:16:25 Progress: 8%|███▎ | ETA: 0:16:24 Progress: 8%|███▎ | ETA: 0:16:25 Progress: 8%|███▎ | ETA: 0:16:25 Progress: 8%|███▍ | ETA: 0:16:24 Progress: 8%|███▍ | ETA: 0:16:23 Progress: 8%|███▍ | ETA: 0:16:23 Progress: 8%|███▍ | ETA: 0:16:23 Progress: 8%|███▌ | ETA: 0:16:22 Progress: 9%|███▌ | ETA: 0:16:21 Progress: 9%|███▌ | ETA: 0:16:22 Progress: 9%|███▋ | ETA: 0:16:21 Progress: 9%|███▋ | ETA: 0:16:20 Progress: 9%|███▋ | ETA: 0:16:20 Progress: 9%|███▊ | ETA: 0:16:19 Progress: 9%|███▊ | ETA: 0:16:20 Progress: 9%|███▊ | ETA: 0:16:19 Progress: 9%|███▊ | ETA: 0:16:18 Progress: 9%|███▉ | ETA: 0:16:17 Progress: 9%|███▉ | ETA: 0:16:17 Progress: 10%|███▉ | ETA: 0:16:16 Progress: 10%|████ | ETA: 0:16:15 Progress: 10%|████ | ETA: 0:16:14 Progress: 10%|████ | ETA: 0:16:15 Progress: 10%|████▏ | ETA: 0:16:14 Progress: 10%|████▏ | ETA: 0:16:13 Progress: 10%|████▏ | ETA: 0:16:13 Progress: 10%|████▏ | ETA: 0:16:13 Progress: 10%|████▎ | ETA: 0:16:12 Progress: 100%|█████████████████████████████████████████| Time: 0:01:51 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 21:53:49 Progress: 14%|█████▋ | ETA: 0:12:10 Progress: 33%|█████████████▌ | ETA: 0:04:01 Progress: 52%|█████████████████████▍ | ETA: 0:01:50 Progress: 69%|████████████████████████████▌ | ETA: 0:00:53 Progress: 89%|████████████████████████████████████▋ | ETA: 0:00:15 Progress: 100%|█████████████████████████████████████████| Time: 0:02:02 [ Info: 488 records are matched 244.961904 seconds (2.01 G allocations: 106.049 GiB, 7.60% gc time, 0.41% compilation time) [ Info: Scan IDs in reference panel Progress: 0%| | ETA: 0:20:11 Progress: 0%|▏ | ETA: 0:19:49 Progress: 0%|▏ | ETA: 0:20:27 Progress: 0%|▏ | ETA: 0:19:57 Progress: 0%|▏ | ETA: 0:19:41 Progress: 1%|▎ | ETA: 0:19:24 Progress: 1%|▎ | ETA: 0:19:39 Progress: 1%|▎ | ETA: 0:19:29 Progress: 1%|▍ | ETA: 0:19:21 Progress: 1%|▍ | ETA: 0:19:13 Progress: 1%|▍ | ETA: 0:19:21 Progress: 1%|▌ | ETA: 0:19:10 Progress: 1%|▌ | ETA: 0:18:55 Progress: 1%|▌ | ETA: 0:18:40 Progress: 1%|▋ | ETA: 0:18:17 Progress: 2%|▋ | ETA: 0:17:57 Progress: 2%|▋ | ETA: 0:17:31 Progress: 2%|▊ | ETA: 0:17:20 Progress: 2%|▊ | ETA: 0:17:06 Progress: 2%|▉ | ETA: 0:16:45 Progress: 2%|▉ | ETA: 0:16:47 Progress: 2%|▉ | ETA: 0:16:48 Progress: 2%|█ | ETA: 0:16:49 Progress: 2%|█ | ETA: 0:16:56 Progress: 3%|█ | ETA: 0:16:59 Progress: 3%|█▏ | ETA: 0:17:01 Progress: 3%|█▏ | ETA: 0:17:03 Progress: 3%|█▏ | ETA: 0:17:09 Progress: 3%|█▏ | ETA: 0:17:10 Progress: 3%|█▎ | ETA: 0:17:11 Progress: 3%|█▎ | ETA: 0:17:12 Progress: 3%|█▎ | ETA: 0:17:17 Progress: 3%|█▍ | ETA: 0:17:18 Progress: 3%|█▍ | ETA: 0:17:19 Progress: 3%|█▍ | ETA: 0:17:19 Progress: 3%|█▍ | ETA: 0:17:20 Progress: 4%|█▌ | ETA: 0:17:25 Progress: 4%|█▌ | ETA: 0:17:24 Progress: 4%|█▌ | ETA: 0:17:24 Progress: 4%|█▋ | ETA: 0:17:25 Progress: 4%|█▋ | ETA: 0:17:28 Progress: 4%|█▋ | ETA: 0:17:27 Progress: 4%|█▋ | ETA: 0:17:28 Progress: 4%|█▊ | ETA: 0:17:28 Progress: 4%|█▊ | ETA: 0:17:30 Progress: 4%|█▊ | ETA: 0:17:29 Progress: 4%|█▉ | ETA: 0:17:28 Progress: 5%|█▉ | ETA: 0:17:26 Progress: 5%|█▉ | ETA: 0:17:28 Progress: 5%|██ | ETA: 0:17:27 Progress: 5%|██ | ETA: 0:17:25 Progress: 5%|██ | ETA: 0:17:23 Progress: 5%|██▏ | ETA: 0:17:25 Progress: 5%|██▏ | ETA: 0:17:24 Progress: 5%|██▏ | ETA: 0:17:23 Progress: 5%|██▏ | ETA: 0:17:22 Progress: 5%|██▎ | ETA: 0:17:24 Progress: 5%|██▎ | ETA: 0:17:23 Progress: 6%|██▎ | ETA: 0:17:23 Progress: 6%|██▍ | ETA: 0:17:22 Progress: 6%|██▍ | ETA: 0:17:24 Progress: 6%|██▍ | ETA: 0:17:23 Progress: 6%|██▌ | ETA: 0:17:22 Progress: 6%|██▌ | ETA: 0:17:21 Progress: 6%|██▌ | ETA: 0:17:23 Progress: 6%|██▌ | ETA: 0:17:22 Progress: 6%|██▋ | ETA: 0:17:21 Progress: 6%|██▋ | ETA: 0:17:21 Progress: 6%|██▋ | ETA: 0:17:21 Progress: 7%|██▊ | ETA: 0:17:21 Progress: 7%|██▊ | ETA: 0:17:20 Progress: 7%|██▊ | ETA: 0:17:19 Progress: 7%|██▊ | ETA: 0:17:20 Progress: 7%|██▉ | ETA: 0:17:18 Progress: 7%|██▉ | ETA: 0:17:17 Progress: 7%|██▉ | ETA: 0:17:16 Progress: 7%|███ | ETA: 0:17:17 Progress: 7%|███ | ETA: 0:17:17 Progress: 7%|███ | ETA: 0:17:17 Progress: 7%|███ | ETA: 0:17:16 Progress: 8%|███▏ | ETA: 0:17:16 Progress: 8%|███▏ | ETA: 0:17:15 Progress: 8%|███▏ | ETA: 0:17:13 Progress: 8%|███▎ | ETA: 0:17:12 Progress: 8%|███▎ | ETA: 0:17:12 Progress: 8%|███▎ | ETA: 0:17:11 Progress: 8%|███▍ | ETA: 0:17:10 Progress: 8%|███▍ | ETA: 0:17:09 Progress: 8%|███▍ | ETA: 0:17:09 Progress: 8%|███▌ | ETA: 0:17:05 Progress: 9%|███▌ | ETA: 0:16:58 Progress: 9%|███▌ | ETA: 0:16:53 Progress: 9%|███▋ | ETA: 0:16:46 Progress: 9%|███▋ | ETA: 0:16:43 Progress: 9%|███▊ | ETA: 0:16:43 Progress: 9%|███▊ | ETA: 0:16:42 Progress: 9%|███▊ | ETA: 0:16:41 Progress: 9%|███▉ | ETA: 0:16:40 Progress: 9%|███▉ | ETA: 0:16:40 Progress: 9%|███▉ | ETA: 0:16:39 Progress: 10%|███▉ | ETA: 0:16:39 Progress: 10%|████ | ETA: 0:16:38 Progress: 10%|████ | ETA: 0:16:38 Progress: 10%|████ | ETA: 0:16:38 Progress: 10%|████▏ | ETA: 0:16:37 Progress: 10%|████▏ | ETA: 0:16:36 Progress: 10%|████▏ | ETA: 0:16:36 Progress: 10%|████▏ | ETA: 0:16:35 Progress: 10%|████▎ | ETA: 0:16:34 Progress: 100%|█████████████████████████████████████████| Time: 0:01:54 [ Info: Match target IDs to reference IDs Progress: 0%| | ETA: 21:53:45 Progress: 19%|███████▋ | ETA: 0:08:34 Progress: 37%|███████████████▏ | ETA: 0:03:22 Progress: 58%|███████████████████████▋ | ETA: 0:01:28 Progress: 78%|████████████████████████████████ | ETA: 0:00:34 Progress: 99%|████████████████████████████████████████▉| ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:02:01 [ Info: 0 records are matched 247.318882 seconds (2.01 G allocations: 106.049 GiB, 7.60% gc time, 0.37% compilation time) Test Summary: | Pass Total Time conformgt_by_id | 1649 1649 12m45.9s [ Info: Match target POS to reference POS Progress: 0%| | ETA: 21:48:46 Progress: 18%|███████▎ | ETA: 0:09:10 Progress: 35%|██████████████▍ | ETA: 0:03:40 Progress: 54%|██████████████████████▎ | ETA: 0:01:40 Progress: 74%|██████████████████████████████▏ | ETA: 0:00:43 Progress: 94%|██████████████████████████████████████▌ | ETA: 0:00:08 Progress: 100%|█████████████████████████████████████████| Time: 0:02:01 [ Info: 833 records are matched 131.826035 seconds (1.01 G allocations: 53.815 GiB, 7.02% gc time, 0.50% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 21:25:14 Progress: 19%|███████▊ | ETA: 0:08:16 Progress: 37%|███████████████▎ | ETA: 0:03:16 Progress: 58%|███████████████████████▊ | ETA: 0:01:25 Progress: 79%|████████████████████████████████▎ | ETA: 0:00:32 Progress: 100%|█████████████████████████████████████████| Time: 0:01:59 [ Info: 493 records are matched 129.606001 seconds (1.01 G allocations: 53.814 GiB, 7.02% gc time, 0.50% compilation time) [ Info: Match target POS to reference POS Progress: 0%| | ETA: 21:22:25 Progress: 16%|██████▊ | ETA: 0:09:43 Progress: 36%|██████████████▋ | ETA: 0:03:30 Progress: 54%|██████████████████████▍ | ETA: 0:01:38 Progress: 73%|██████████████████████████████ | ETA: 0:00:43 Progress: 96%|███████████████████████████████████████▎ | ETA: 0:00:05 Progress: 100%|█████████████████████████████████████████| Time: 0:01:59 [ Info: 0 records are matched 129.417990 seconds (1.01 G allocations: 53.814 GiB, 7.09% gc time, 0.48% compilation time) Test Summary: | Pass Total Time conformgt_by_pos | 2502 2502 6m33.4s 1.251631 seconds (1.10 M allocations: 65.800 MiB, 1.81% gc time, 78.35% compilation time) 1.052514 seconds (1.02 M allocations: 62.882 MiB, 72.54% compilation time) 1.023075 seconds (1.02 M allocations: 61.925 MiB, 2.57% gc time, 72.13% compilation time) 0.380521 seconds (163.59 k allocations: 10.201 MiB, 99.94% compilation time) 0.012101 seconds (5.42 k allocations: 364.711 KiB, 95.39% compilation time) 0.009334 seconds (2.60 k allocations: 164.852 KiB, 94.44% compilation time) Test Summary: | Pass Total Time convert_gt(vcfile) | 11 11 9.5s 1.051708 seconds (911.54 k allocations: 55.301 MiB, 75.18% compilation time) 0.979277 seconds (779.82 k allocations: 49.466 MiB, 3.05% gc time, 73.53% compilation time) Test Summary: | Pass Total Time convert_ht(vcfile) | 6 6 6.3s Test Summary: | Pass Total Time convert_ds | 5 5 1.2s 0.172038 seconds (524.56 k allocations: 30.666 MiB, 18.23% compilation time) 0.645744 seconds (617.22 k allocations: 37.124 MiB, 2.73% gc time, 75.18% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:72 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:176 0.153746 seconds (520.58 k allocations: 32.160 MiB, 8.47% gc time) 0.601940 seconds (575.75 k allocations: 35.910 MiB, 76.99% compilation time) ┌ Warning: Reached end of record! Columns 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:414 ┌ Warning: Reached end of record! Rows 1357-1400 are filled with 0.0s and are NOT haplotypes! └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:501 0.194475 seconds (1.56 M allocations: 62.080 MiB, 5.18% compilation time) 0.828897 seconds (1.67 M allocations: 69.524 MiB, 3.08% gc time, 71.38% compilation time) ┌ Warning: Reached end of reader; columns 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:672 ┌ Warning: Reached end of reader; rows 1357-1400 are set to missing values └ @ VCFTools ~/.julia/packages/VCFTools/IWkMe/src/convert.jl:787 Test Summary: | Pass Total Time convert to transpose functions | 13 13 6.6s Test Summary: | Pass Total Time record info | 14 14 6.0s Test Summary: | Pass Total Time write VCF | 3 3 3.9s 2.274587 seconds (4.70 M allocations: 294.344 MiB, 3.58% gc time, 54.81% compilation time) 1.116138 seconds (2.38 M allocations: 142.505 MiB, 2.84% gc time, 22.23% compilation time) 1.005472 seconds (4.42 M allocations: 276.559 MiB, 4.63% gc time) Test Summary: | Pass Total Time filter by sample/record index | 9 9 7.5s 1.090527 seconds (584.11 k allocations: 33.112 MiB, 1.42% gc time, 41.94% compilation time) Test Summary: | Pass Total Time mask_gt | 5 5 3.9s Test Summary: | Pass Total Time filter_chr | 4 4 2.0s Progress: 0%|▏ | ETA: 0:23:11 Progress: 1%|▎ | ETA: 0:22:20 Progress: 1%|▌ | ETA: 0:22:01 Progress: 2%|▋ | ETA: 0:22:04 Progress: 2%|▊ | ETA: 0:21:49 Progress: 2%|▉ | ETA: 0:21:49 Progress: 3%|█▏ | ETA: 0:21:42 Progress: 3%|█▎ | ETA: 0:21:39 Progress: 3%|█▍ | ETA: 0:21:40 Progress: 4%|█▌ | ETA: 0:21:42 Progress: 4%|█▊ | ETA: 0:21:41 Progress: 4%|█▉ | ETA: 0:21:39 Progress: 5%|██ | ETA: 0:21:37 Progress: 5%|██▏ | ETA: 0:21:33 Progress: 6%|██▎ | ETA: 0:21:25 Progress: 6%|██▌ | ETA: 0:21:14 Progress: 6%|██▋ | ETA: 0:21:06 Progress: 7%|██▊ | ETA: 0:20:59 Progress: 7%|██▉ | ETA: 0:20:53 Progress: 8%|███▏ | ETA: 0:20:47 Progress: 8%|███▎ | ETA: 0:20:42 Progress: 8%|███▍ | ETA: 0:20:37 Progress: 9%|███▌ | ETA: 0:20:30 Progress: 9%|███▊ | ETA: 0:20:27 Progress: 9%|███▉ | ETA: 0:20:20 Progress: 10%|████ | ETA: 0:20:15 Progress: 10%|████▏ | ETA: 0:20:10 Progress: 11%|████▍ | ETA: 0:20:05 Progress: 11%|████▌ | ETA: 0:20:00 Progress: 11%|████▋ | ETA: 0:19:56 Progress: 12%|████▊ | ETA: 0:19:48 Progress: 12%|█████ | ETA: 0:19:41 Progress: 12%|█████▏ | ETA: 0:19:35 Progress: 13%|█████▎ | ETA: 0:19:30 Progress: 13%|█████▍ | ETA: 0:19:25 Progress: 14%|█████▋ | ETA: 0:19:20 Progress: 14%|█████▊ | ETA: 0:19:14 Progress: 14%|█████▉ | ETA: 0:19:09 Progress: 15%|██████ | ETA: 0:19:03 Progress: 15%|██████▎ | ETA: 0:18:57 Progress: 16%|██████▍ | ETA: 0:18:53 Progress: 16%|██████▌ | ETA: 0:18:47 Progress: 16%|██████▋ | ETA: 0:18:43 Progress: 17%|██████▉ | ETA: 0:18:38 Progress: 17%|███████ | ETA: 0:18:34 Progress: 17%|███████▏ | ETA: 0:18:29 Progress: 18%|███████▎ | ETA: 0:18:25 Progress: 18%|███████▍ | ETA: 0:18:21 Progress: 18%|███████▋ | ETA: 0:18:15 Progress: 19%|███████▊ | ETA: 0:18:10 Progress: 19%|███████▉ | ETA: 0:18:04 Progress: 20%|████████ | ETA: 0:17:59 Progress: 20%|████████▎ | ETA: 0:17:54 Progress: 20%|████████▍ | ETA: 0:17:49 Progress: 21%|████████▌ | ETA: 0:17:44 Progress: 21%|████████▋ | ETA: 0:17:39 Progress: 22%|████████▉ | ETA: 0:17:33 Progress: 22%|█████████ | ETA: 0:17:29 Progress: 22%|█████████▏ | ETA: 0:17:24 Progress: 23%|█████████▎ | ETA: 0:17:19 Progress: 23%|█████████▌ | ETA: 0:17:13 Progress: 23%|█████████▋ | ETA: 0:17:07 Progress: 24%|█████████▊ | ETA: 0:17:01 Progress: 24%|██████████ | ETA: 0:16:55 Progress: 25%|██████████▏ | ETA: 0:16:50 Progress: 25%|██████████▎ | ETA: 0:16:45 Progress: 25%|██████████▍ | ETA: 0:16:40 Progress: 26%|██████████▌ | ETA: 0:16:35 Progress: 26%|██████████▊ | ETA: 0:16:30 Progress: 26%|██████████▉ | ETA: 0:16:25 Progress: 27%|███████████ | ETA: 0:16:21 Progress: 27%|███████████▏ | ETA: 0:16:15 Progress: 28%|███████████▍ | ETA: 0:16:11 Progress: 28%|███████████▌ | ETA: 0:16:05 Progress: 28%|███████████▋ | ETA: 0:16:00 Progress: 29%|███████████▊ | ETA: 0:15:55 Progress: 29%|████████████ | ETA: 0:15:50 Progress: 30%|████████████▏ | ETA: 0:15:45 Progress: 30%|████████████▎ | ETA: 0:15:40 Progress: 30%|████████████▍ | ETA: 0:15:35 Progress: 31%|████████████▌ | ETA: 0:15:31 Progress: 31%|████████████▊ | ETA: 0:15:26 Progress: 31%|████████████▉ | ETA: 0:15:21 Progress: 32%|█████████████ | ETA: 0:15:16 Progress: 32%|█████████████▏ | ETA: 0:15:11 Progress: 33%|█████████████▍ | ETA: 0:15:06 Progress: 33%|█████████████▌ | ETA: 0:15:01 Progress: 33%|█████████████▋ | ETA: 0:14:56 Progress: 34%|█████████████▊ | ETA: 0:14:51 Progress: 34%|██████████████ | ETA: 0:14:46 Progress: 34%|██████████████▏ | ETA: 0:14:40 Progress: 35%|██████████████▎ | ETA: 0:14:35 Progress: 35%|██████████████▍ | ETA: 0:14:29 Progress: 36%|██████████████▋ | ETA: 0:14:24 Progress: 36%|██████████████▊ | ETA: 0:14:19 Progress: 36%|██████████████▉ | ETA: 0:14:14 Progress: 37%|███████████████ | ETA: 0:14:08 Progress: 37%|███████████████▎ | ETA: 0:14:03 Progress: 37%|███████████████▍ | ETA: 0:13:58 Progress: 38%|███████████████▌ | ETA: 0:13:52 Progress: 38%|███████████████▋ | ETA: 0:13:47 Progress: 39%|███████████████▉ | ETA: 0:13:42 Progress: 39%|████████████████ | ETA: 0:13:36 Progress: 39%|████████████████▏ | ETA: 0:13:31 Progress: 40%|████████████████▍ | ETA: 0:13:26 Progress: 40%|████████████████▌ | ETA: 0:13:20 Progress: 41%|████████████████▋ | ETA: 0:13:14 Progress: 41%|████████████████▊ | ETA: 0:13:08 Progress: 41%|█████████████████ | ETA: 0:13:02 Progress: 42%|█████████████████▏ | ETA: 0:12:56 Progress: 42%|█████████████████▎ | ETA: 0:12:51 Progress: 43%|█████████████████▌ | ETA: 0:12:46 Progress: 43%|█████████████████▋ | ETA: 0:12:41 Progress: 43%|█████████████████▊ | ETA: 0:12:36 Progress: 44%|█████████████████▉ | ETA: 0:12:31 Progress: 44%|██████████████████▏ | ETA: 0:12:25 Progress: 45%|██████████████████▎ | ETA: 0:12:20 Progress: 45%|██████████████████▍ | ETA: 0:12:15 Progress: 45%|██████████████████▌ | ETA: 0:12:10 Progress: 46%|██████████████████▊ | ETA: 0:12:05 Progress: 46%|██████████████████▉ | ETA: 0:12:00 Progress: 46%|███████████████████ | ETA: 0:11:55 Progress: 47%|███████████████████▏ | ETA: 0:11:50 Progress: 47%|███████████████████▍ | ETA: 0:11:45 Progress: 48%|███████████████████▌ | ETA: 0:11:40 Progress: 48%|███████████████████▋ | ETA: 0:11:35 Progress: 48%|███████████████████▊ | ETA: 0:11:30 Progress: 49%|████████████████████ | ETA: 0:11:25 Progress: 49%|████████████████████▏ | ETA: 0:11:20 Progress: 49%|████████████████████▎ | ETA: 0:11:15 Progress: 50%|████████████████████▍ | ETA: 0:11:10 Progress: 50%|████████████████████▋ | ETA: 0:11:05 Progress: 51%|████████████████████▊ | ETA: 0:11:00 Progress: 51%|████████████████████▉ | ETA: 0:10:55 Progress: 51%|█████████████████████ | ETA: 0:10:49 Progress: 52%|█████████████████████▎ | ETA: 0:10:44 Progress: 52%|█████████████████████▍ | ETA: 0:10:39 Progress: 52%|█████████████████████▌ | ETA: 0:10:34 Progress: 53%|█████████████████████▊ | ETA: 0:10:28 Progress: 53%|█████████████████████▉ | ETA: 0:10:22 Progress: 54%|██████████████████████ | ETA: 0:10:17 Progress: 54%|██████████████████████▎ | ETA: 0:10:11 Progress: 55%|██████████████████████▍ | ETA: 0:10:05 Progress: 55%|██████████████████████▌ | ETA: 0:10:00 Progress: 55%|██████████████████████▋ | ETA: 0:09:55 Progress: 56%|██████████████████████▉ | ETA: 0:09:50 Progress: 56%|███████████████████████ | ETA: 0:09:44 Progress: 56%|███████████████████████▏ | ETA: 0:09:39 Progress: 57%|███████████████████████▍ | ETA: 0:09:33 Progress: 57%|███████████████████████▌ | ETA: 0:09:28 Progress: 58%|███████████████████████▋ | ETA: 0:09:23 Progress: 58%|███████████████████████▊ | ETA: 0:09:18 Progress: 58%|████████████████████████ | ETA: 0:09:13 Progress: 59%|████████████████████████▏ | ETA: 0:09:07 Progress: 59%|████████████████████████▎ | ETA: 0:09:02 Progress: 60%|████████████████████████▍ | ETA: 0:08:57 Progress: 60%|████████████████████████▋ | ETA: 0:08:52 Progress: 60%|████████████████████████▊ | ETA: 0:08:47 Progress: 61%|████████████████████████▉ | ETA: 0:08:41 Progress: 61%|█████████████████████████▏ | ETA: 0:08:36 Progress: 62%|█████████████████████████▎ | ETA: 0:08:31 Progress: 62%|█████████████████████████▍ | ETA: 0:08:26 Progress: 62%|█████████████████████████▌ | ETA: 0:08:21 Progress: 63%|█████████████████████████▊ | ETA: 0:08:16 Progress: 63%|█████████████████████████▉ | ETA: 0:08:11 Progress: 63%|██████████████████████████ | ETA: 0:08:06 Progress: 64%|██████████████████████████▏ | ETA: 0:08:01 Progress: 64%|██████████████████████████▍ | ETA: 0:07:56 Progress: 65%|██████████████████████████▌ | ETA: 0:07:50 Progress: 65%|██████████████████████████▋ | ETA: 0:07:45 Progress: 65%|██████████████████████████▊ | ETA: 0:07:40 Progress: 66%|███████████████████████████ | ETA: 0:07:34 Progress: 66%|███████████████████████████▏ | ETA: 0:07:29 Progress: 67%|███████████████████████████▎ | ETA: 0:07:24 Progress: 67%|███████████████████████████▌ | ETA: 0:07:18 Progress: 67%|███████████████████████████▋ | ETA: 0:07:13 Progress: 68%|███████████████████████████▊ | ETA: 0:07:08 Progress: 68%|███████████████████████████▉ | ETA: 0:07:03 Progress: 69%|████████████████████████████▏ | ETA: 0:06:58 Progress: 69%|████████████████████████████▎ | ETA: 0:06:53 Progress: 69%|████████████████████████████▍ | ETA: 0:06:48 Progress: 70%|████████████████████████████▌ | ETA: 0:06:43 Progress: 70%|████████████████████████████▊ | ETA: 0:06:37 Progress: 70%|████████████████████████████▉ | ETA: 0:06:32 Progress: 71%|█████████████████████████████ | ETA: 0:06:27 Progress: 71%|█████████████████████████████▎ | ETA: 0:06:21 Progress: 72%|█████████████████████████████▌ | ETA: 0:06:12 Progress: 72%|█████████████████████████████▋ | ETA: 0:06:04 Progress: 73%|█████████████████████████████▉ | ETA: 0:05:57 Progress: 73%|██████████████████████████████ | ETA: 0:05:52 Progress: 74%|██████████████████████████████▎ | ETA: 0:05:47 Progress: 74%|██████████████████████████████▍ | ETA: 0:05:42 Progress: 74%|██████████████████████████████▌ | ETA: 0:05:37 Progress: 75%|██████████████████████████████▋ | ETA: 0:05:32 Progress: 75%|██████████████████████████████▉ | ETA: 0:05:27 Progress: 76%|███████████████████████████████ | ETA: 0:05:21 Progress: 76%|███████████████████████████████▎ | ETA: 0:05:15 Progress: 77%|███████████████████████████████▍ | ETA: 0:05:09 Progress: 77%|███████████████████████████████▌ | ETA: 0:05:03 Progress: 77%|███████████████████████████████▊ | ETA: 0:04:58 Progress: 78%|███████████████████████████████▉ | ETA: 0:04:53 Progress: 78%|████████████████████████████████ | ETA: 0:04:48 Progress: 79%|████████████████████████████████▎ | ETA: 0:04:43 Progress: 79%|████████████████████████████████▍ | ETA: 0:04:38 Progress: 79%|████████████████████████████████▌ | ETA: 0:04:33 Progress: 80%|████████████████████████████████▋ | ETA: 0:04:28 Progress: 80%|████████████████████████████████▊ | ETA: 0:04:23 Progress: 80%|█████████████████████████████████ | ETA: 0:04:18 Progress: 81%|█████████████████████████████████▏ | ETA: 0:04:13 Progress: 81%|█████████████████████████████████▎ | ETA: 0:04:08 Progress: 82%|█████████████████████████████████▍ | ETA: 0:04:03 Progress: 82%|█████████████████████████████████▋ | ETA: 0:03:58 Progress: 82%|█████████████████████████████████▊ | ETA: 0:03:53 Progress: 83%|█████████████████████████████████▉ | ETA: 0:03:48 Progress: 83%|██████████████████████████████████ | ETA: 0:03:43 Progress: 83%|██████████████████████████████████▎ | ETA: 0:03:38 Progress: 84%|██████████████████████████████████▍ | ETA: 0:03:32 Progress: 84%|██████████████████████████████████▋ | ETA: 0:03:26 Progress: 85%|██████████████████████████████████▊ | ETA: 0:03:21 Progress: 85%|██████████████████████████████████▉ | ETA: 0:03:16 Progress: 85%|███████████████████████████████████ | ETA: 0:03:11 Progress: 86%|███████████████████████████████████▎ | ETA: 0:03:06 Progress: 86%|███████████████████████████████████▍ | ETA: 0:03:01 Progress: 87%|███████████████████████████████████▌ | ETA: 0:02:56 Progress: 87%|███████████████████████████████████▋ | ETA: 0:02:51 Progress: 87%|███████████████████████████████████▉ | ETA: 0:02:46 Progress: 88%|████████████████████████████████████ | ETA: 0:02:41 Progress: 88%|████████████████████████████████████▏ | ETA: 0:02:34 Progress: 89%|████████████████████████████████████▍ | ETA: 0:02:27 Progress: 89%|████████████████████████████████████▋ | ETA: 0:02:19 Progress: 90%|████████████████████████████████████▉ | ETA: 0:02:12 Progress: 90%|█████████████████████████████████████ | ETA: 0:02:06 Progress: 91%|█████████████████████████████████████▎ | ETA: 0:02:01 Progress: 91%|█████████████████████████████████████▍ | ETA: 0:01:57 Progress: 91%|█████████████████████████████████████▌ | ETA: 0:01:52 Progress: 92%|█████████████████████████████████████▋ | ETA: 0:01:47 Progress: 92%|█████████████████████████████████████▊ | ETA: 0:01:42 Progress: 93%|██████████████████████████████████████ | ETA: 0:01:35 Progress: 93%|██████████████████████████████████████▎ | ETA: 0:01:29 Progress: 94%|██████████████████████████████████████▍ | ETA: 0:01:24 Progress: 94%|██████████████████████████████████████▌ | ETA: 0:01:19 Progress: 94%|██████████████████████████████████████▋ | ETA: 0:01:14 Progress: 95%|██████████████████████████████████████▉ | ETA: 0:01:09 Progress: 95%|███████████████████████████████████████ | ETA: 0:01:04 Progress: 95%|███████████████████████████████████████▏ | ETA: 0:00:59 Progress: 96%|███████████████████████████████████████▎ | ETA: 0:00:55 Progress: 96%|███████████████████████████████████████▌ | ETA: 0:00:50 Progress: 97%|███████████████████████████████████████▋ | ETA: 0:00:45 Progress: 97%|███████████████████████████████████████▊ | ETA: 0:00:39 Progress: 97%|███████████████████████████████████████▉ | ETA: 0:00:34 Progress: 98%|████████████████████████████████████████▏| ETA: 0:00:29 Progress: 98%|████████████████████████████████████████▎| ETA: 0:00:24 Progress: 99%|████████████████████████████████████████▍| ETA: 0:00:19 Progress: 99%|████████████████████████████████████████▌| ETA: 0:00:14 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 16 running 1 of 1 signal (10): User defined signal 1 jl_egal_ at /source/src/julia.h:1893:15 [inlined] jl_table_assign_bp at /source/src/iddict.c:62:17 ijl_eqtable_put at /source/src/iddict.c:143:20 setindex! at ./iddict.jl:89:0 [inlined] deepcopy_internal at ./deepcopy.jl:132:0 (pc: 56) unknown function (ip: 0x7d7811da8c06) at (unknown file) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 _deepcopy_memory_t at ./deepcopy.jl:120:0 (pc: 121) deepcopy_internal at ./deepcopy.jl:104:0 [inlined] deepcopy_internal at ./deepcopy.jl:142:0 (pc: 48) deepcopy_internal at ./deepcopy.jl:133:0 (pc: 65) deepcopy at ./deepcopy.jl:34:0 [inlined] copy at /home/pkgeval/.julia/packages/VariantCallFormat/tQ143/src/record.jl:309:0 (pc: 267) iterate at /home/pkgeval/.julia/packages/BioGenerics/53MtO/src/IO.jl:90:0 [inlined] iterate at ./iterators.jl:209:0 [inlined] aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:46:0 (pc: 350) aim_select at /home/pkgeval/.julia/packages/VCFTools/IWkMe/src/aim_select.jl:26:0 (pc: 1) unknown function (ip: 0x7d7804d87906) at (unknown file) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 macro expansion at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:19:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2246:0 [inlined] top-level scope at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/aim_test.jl:3:0 (pc: 359) jl_invoke_oneshot at /source/src/gf.c:4383:23 ijl_eval_thunk at /source/src/toplevel.c:756:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:326:0 (pc: 1) IncludeInto at ./Base.jl:327:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 426) _start at ./client.jl:596:0 (pc: 295) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 jl_apply at /source/src/julia.h:2405:12 [inlined] true_main at /source/src/jlapi.c:985:29 jl_repl_entrypoint at /source/src/jlapi.c:1152:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7d782c92e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Progress: 99%|████████████████████████████████████████▊| ETA: 0:00:09 ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Progress: 99%|████████████████████████████████████████▉| ETA: 0:00:04┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d7811dfc010 Total snapshots: 680. Utilization: 100% ╎680 @Base/client.jl:596 _start() ╎ 680 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 680 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ 680 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ 680 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _path::St… ╎ 680 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 680 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity), m… ╎ ╎ 680 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ 680 @Base/Base.jl:327 (::Base.IncludeInto)(fname::String) ╎ ╎ 680 @Base/Base.jl:326 include(mapexpr::Function, mod::Module, _pat… ╎ ╎ 680 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module… ╎ ╎ ╎ 680 @Base/loading.jl:3132 include_string(mapexpr::typeof(identit… ╎ ╎ ╎ 680 @Base/boot.jl:522 eval(m::Module, e::Any) ╎ ╎ ╎ 680 @VCFTools/…_test.jl:3 top-level scope ╎ ╎ ╎ 680 @Test/src/Test.jl:2246 macro expansion ╎ ╎ ╎ 680 @VCFTools/…test.jl:19 macro expansion ╎ ╎ ╎ ╎ 680 @VCFTools/…lect.jl:26 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 111 @VCFTools/…ect.jl:44 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 16 @VCFTools/…ect.jl:65 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 16 @VCFTools/…ts.jl:122 gtstats(record::VariantCallForm… ╎ ╎ ╎ ╎ 1 @VCFTools/…ts.jl:124 gtstats(record::VariantCallFor… 1╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:924 iterate(r::UnitRange{Int64}) ╎ ╎ ╎ ╎ 12 @VCFTools/…ts.jl:127 gtstats(record::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 3 @VCFTools/…t.jl:225 geno_ismissing(record::Variant… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 getindex(A::Vector{UInt8}, i:… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 checkbounds(A::Vector{UInt8},… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:387 checkbounds(::Type{Bool}, A:… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1255 length(a::Vector{UInt8}) 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex(A::Vector{UInt8}, i:… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:658 ==(x::UInt8, y::UInt8) ╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1039 getindex(A::Vector{UnitRange{… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:391 checkbounds(A::Vector{UnitRan… 3╎ ╎ ╎ ╎ ╎ 3 @Base/…tials.jl:1040 getindex(A::Vector{UnitRange{… ╎ ╎ ╎ ╎ ╎ 5 @Base/…ators.jl:425 >(x::Int64, y::Int64) 5╎ ╎ ╎ ╎ ╎ 5 @Base/int.jl:83 <(x::Int64, y::Int64) ╎ ╎ ╎ ╎ 1 @VCFTools/…ts.jl:132 gtstats(record::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:3225 getindex(v::UnitRange{Int64}, … ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:959 _getindex(v::UnitRange{Int64},… ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:946 _in_unit_range(v::UnitRange{I… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:560 <=(x::Int64, y::Int64) 2╎ ╎ ╎ ╎ 2 @VCFTools/…ts.jl:134 gtstats(record::VariantCallFor… ╎ ╎ ╎ ╎ 79 @VCFTools/…ect.jl:74 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 79 @Base/array.jl:2528 findfirst(testf::Base.Fix2{typeo… 1╎ ╎ ╎ ╎ 70 @Base/array.jl:2477 findnext(testf::Base.Fix2{typeo… 5╎ ╎ ╎ ╎ ╎ 5 @Base/…tials.jl:1040 getindex(A::Vector{String}, i… ╎ ╎ ╎ ╎ ╎ 64 @Base/…ators.jl:1206 (::Base.Fix2{typeof(isequal),… ╎ ╎ ╎ ╎ ╎ 64 @Base/…tors.jl:1206 (::Base.Fix2{typeof(isequal),… ╎ ╎ ╎ ╎ ╎ 64 @Base/…tors.jl:178 isequal(x::String, y::String) 64╎ ╎ ╎ ╎ ╎ 64 @Base/…ring.jl:238 ==(a::String, b::String) 1╎ ╎ ╎ ╎ 9 @Base/array.jl:2478 findnext(testf::Base.Fix2{typeo… 7╎ ╎ ╎ ╎ ╎ 8 @Base/…otion.jl:658 ==(x::Int64, y::Int64) ╎ ╎ ╎ ╎ 8 @VCFTools/…ect.jl:76 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 8 @VariantCallFormat/…:613 findgenokey(record::Variant… 1╎ ╎ ╎ ╎ 1 @Base/…piler.jl:58 getproperty(x::VariantCallFormat… ╎ ╎ ╎ ╎ 7 @Base/array.jl:2528 findfirst(testf::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:2475 findnext(testf::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ators.jl:425 >(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 <(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 6 @Base/array.jl:2477 findnext(testf::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 6 @VariantCallFormat/…:613 (::VariantCallFormat.var… ╎ ╎ ╎ ╎ ╎ 6 @VariantCallFormat/…:673 isequaldata(str::String… 5╎ ╎ ╎ ╎ ╎ 5 @VariantCallFormat/…:677 memcmp(p1::Ptr{UInt8},… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1273 pointer(x::Vector{UInt8}, i… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1270 pointer(x::Vector{UInt8}) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nter.jl:63 cconvert(::Type{Ptr{UInt8}}… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:79 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 1 @VCFTools/…rt.jl:225 geno_ismissing(record::VariantC… 1╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1040 getindex(A::Vector{UInt8}, i::… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:82 aim_select(record::VariantCallFo… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 getindex(A::Vector{UInt8}, i::… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:83 aim_select(record::VariantCallFo… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 getindex(A::Vector{UInt8}, i::… ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:85 aim_select(record::VariantCallFo… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 getindex(A::Vector{Int64}, i::… ╎ ╎ ╎ ╎ 2 @VCFTools/…ect.jl:86 aim_select(record::VariantCallFo… 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:1040 getindex(A::Vector{Int64}, i::… ╎ ╎ ╎ ╎ 2 @VCFTools/…ect.jl:99 aim_select(record::VariantCallFo… ╎ ╎ ╎ ╎ 2 @Base/…al/log.jl:255 log(x::Float64) ╎ ╎ ╎ ╎ 2 @Base/…al/log.jl:284 _log(x::Float64, base::Val{:ℯ}… ╎ ╎ ╎ ╎ ╎ 2 @Base/…l/log.jl:157 log_proc1(y::Float64, mf::Floa… 2╎ ╎ ╎ ╎ ╎ 2 @Base/float.jl:483 +(x::Float64, y::Float64) ╎ ╎ ╎ ╎ 1 @VCFTools/…ect.jl:45 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 1 @ProgressMeter/…:483 next!(p::ProgressMeter.Progress) ╎ ╎ ╎ ╎ 1 @ProgressMeter/…:484 next!(p::ProgressMeter.Progress… ╎ ╎ ╎ ╎ 1 @ProgressMeter/…:465 lock_if_threading(f::ProgressM… 1╎ ╎ ╎ ╎ ╎ 1 @ProgressMeter/…:453 is_threading(p::ProgressMeter… ╎ ╎ ╎ ╎ 568 @VCFTools/…ect.jl:46 aim_select(vcffile::String, sampl… ╎ ╎ ╎ ╎ 568 @Base/…rators.jl:209 iterate(e::Base.Iterators.Enumer… ╎ ╎ ╎ ╎ 111 @BioGenerics/…jl:87 iterate(reader::VariantCallForma… ╎ ╎ ╎ ╎ 111 @BioGenerics/…jl:76 tryread!(reader::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 111 @VariantCallFormat/…:142 read!(reader::VariantCall… ╎ ╎ ╎ ╎ ╎ 2 @VariantCallFormat/…:156 _read!(reader::VariantCa… ╎ ╎ ╎ ╎ ╎ 2 @VariantCallFormat/…:78 initialize!(record::Vari… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:2153 empty!(a::Vector{Vector{Uni… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ray.jl:1317 _deleteend!(a::Vector{Vecto… ╎ ╎ ╎ ╎ ╎ 89 @VariantCallFormat/…:165 _read!(reader::VariantCa… ╎ ╎ ╎ ╎ ╎ 34 @Automa/…en.jl:449 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/…iler.jl:58 getproperty(x::VariantCallFor… ╎ ╎ ╎ ╎ ╎ 8 @Base/array.jl:441 getindex(::Type{UnitRange{In… 8╎ ╎ ╎ ╎ ╎ 8 @Base/boot.jl:720 Vector{UnitRange{Int64}}(::U… ╎ ╎ ╎ ╎ ╎ 23 @Base/array.jl:1373 push!(a::Vector{UnitRange{I… ╎ ╎ ╎ ╎ ╎ 20 @Base/…ray.jl:1376 _push!(a::Vector{UnitRange{… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1232 _growend!(a::Vector{UnitRa… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 <(x::Int64, y::Int64) 4╎ ╎ ╎ ╎ ╎ ╎ 19 @Base/…ray.jl:1233 _growend!(a::Vector{UnitRa… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1187 _growend_internal!(a::Vect… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:58 getproperty(x::Vector{Unit… ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ay.jl:1209 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ay.jl:1129 array_new_memory(mem::Mem… 12╎ ╎ ╎ ╎ ╎ ╎ 12 @Base/…ot.jl:659 Memory{UnitRange{Int64}}(… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1212 _growend_internal!(a::Vect… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:666 memoryref(mem::Memory{Unit… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1217 _growend_internal!(a::Vect… ╎ ╎ ╎ ╎ ╎ 3 @Base/…ray.jl:1377 _push!(a::Vector{UnitRange{… 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ray.jl:1072 __safe_setindex!(A::Vector… ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:1380 broadcasted(::typeof(-), ::… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:1168 broadcasted(::Base.Broadcas… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nge.jl:159 range(start::Int64, stop::I… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nge.jl:159 range(start::Int64, stop::… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:175 _range(start::Int64, step:… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:220 range_start_stop(start::I… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:5 (::Colon)(start::Int64, st… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:417 UnitRange{Int64}(start:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:428 unitrange_last(start::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rs.jl:481 >=(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:560 <=(x::Int64, y::Int6… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 getindex(A::Vector{Vector{U… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 checkbounds(A::Vector{Vecto… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:387 checkbounds(::Type{Bool}, A… ╎ ╎ ╎ ╎ ╎ 2 @Automa/…en.jl:502 macro expansion ╎ ╎ ╎ ╎ ╎ 2 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 2╎ ╎ ╎ ╎ ╎ 2 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… ╎ ╎ ╎ ╎ ╎ 3 @Automa/…en.jl:503 macro expansion ╎ ╎ ╎ ╎ ╎ 3 @Base/range.jl:1468 in(x::UInt8, r::UnitRange{U… 3╎ ╎ ╎ ╎ ╎ 3 @Base/bool.jl:14 &(x::Bool, y::Bool) ╎ ╎ ╎ ╎ ╎ 17 @Automa/…en.jl:577 macro expansion ╎ ╎ ╎ ╎ ╎ 16 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 14╎ ╎ ╎ ╎ ╎ 16 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:560 <=(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 1 @Automa/…ry.jl:57 getindex(mem::Automa.SizedMem… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…nter.jl:151 unsafe_load(p::Ptr{UInt8}, … ╎ ╎ ╎ ╎ ╎ 21 @Automa/…en.jl:578 macro expansion 14╎ ╎ ╎ ╎ ╎ 14 @Base/bool.jl:14 &(x::Bool, y::Bool) 7╎ ╎ ╎ ╎ ╎ 7 @Base/bool.jl:15 |(x::Bool, y::Bool) ╎ ╎ ╎ ╎ ╎ 4 @Automa/…en.jl:579 macro expansion ╎ ╎ ╎ ╎ ╎ 4 @Base/range.jl:928 iterate(r::UnitRange{Int64},… 4╎ ╎ ╎ ╎ ╎ 4 @Base/…tion.jl:658 ==(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ 1 @Automa/…en.jl:580 macro expansion ╎ ╎ ╎ ╎ ╎ 7 @Automa/…en.jl:588 macro expansion ╎ ╎ ╎ ╎ ╎ 5 @Automa/…ry.jl:56 getindex(mem::Automa.SizedMem… 4╎ ╎ ╎ ╎ ╎ 5 @Automa/…ry.jl:49 checkbounds(mem::Automa.Size… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:560 <=(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ 2 @Automa/…ry.jl:57 getindex(mem::Automa.SizedMem… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…nter.jl:151 unsafe_load(p::Ptr{UInt8}, … ╎ ╎ ╎ ╎ ╎ 20 @VariantCallFormat/…:181 _read!(reader::VariantCa… ╎ ╎ ╎ ╎ ╎ 20 @BufferedStreams/…:61 fillbuffer!(stream::Buffer… ╎ ╎ ╎ ╎ ╎ 20 @BufferedStreams/…:71 fillbuffer!(stream::Buffe… ╎ ╎ ╎ ╎ ╎ 20 @BufferedStreams/…:5 readbytes!(source::Transc… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/io.jl:1185 readbytes!(s::TranscodingStr… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @TranscodingStreams/…:212 eof(stream::Transc… ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:213 eof(stream::Transc… ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:222 sloweof(stream::T… ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:610 fillbuffer(strea… ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:624 fillbuffer(stre… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @TranscodingStreams/…:685 callprocess(st… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @CodecZlib/…:195 process(codec::GzipDec… 3╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @CodecZlib/…:127 inflate!(zstream::Cod… ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/io.jl:1186 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 9 @TranscodingStreams/…:306 read(stream::Trans… ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/io.jl:377 peek(s::TranscodingStreams.… ╎ ╎ ╎ ╎ ╎ ╎ 2 @TranscodingStreams/…:298 peek(stream::Tra… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @TranscodingStreams/…:209 eof(stream::Tra… ╎ ╎ ╎ ╎ ╎ ╎ 7 @TranscodingStreams/…:302 peek(stream::Tra… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:1039 getindex(A::Vector{UInt… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:391 checkbounds(A::Vector{U… 5╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ls.jl:1040 getindex(A::Vector{UInt… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/io.jl:1188 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ors.jl:425 >(x::Int64, y::Int64) 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:83 <(x::Int64, y::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/io.jl:1192 readbytes!(s::TranscodingStr… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ray.jl:393 setindex!(V::SubArray{UInt… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ay.jl:1048 setindex!(A::Vector{UInt8… 3╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ay.jl:1053 _setindex!(A::Vector{UIn… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::Vector{UIn… ╎ ╎ ╎ ╎ 457 @BioGenerics/…jl:90 iterate(reader::VariantCallForma… ╎ ╎ ╎ ╎ 457 @VariantCallFormat/…:309 copy(record::VariantCallFo… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:389 copy(a::Vector{UInt8}) 2╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:659 Memory{UInt8}(::UndefInitialize… ╎ ╎ ╎ ╎ ╎ 455 @Base/…pcopy.jl:34 deepcopy(x::Vector{Vector{UnitR… ╎ ╎ ╎ ╎ ╎ 455 @Base/…pcopy.jl:133 deepcopy_internal(x::Vector{V… ╎ ╎ ╎ ╎ ╎ 455 @Base/…copy.jl:142 deepcopy_internal(x::MemoryRe… ╎ ╎ ╎ ╎ ╎ 455 @Base/…copy.jl:104 deepcopy_internal(x::Memory{… ╎ ╎ ╎ ╎ ╎ 7 @Base/…copy.jl:111 _deepcopy_memory_t(x::Memor… 7╎ ╎ ╎ ╎ ╎ ╎ 7 @Base/boot.jl:659 (::Type{Memory{T}} where T)… 34╎ ╎ ╎ ╎ ╎ 34 @Base/…copy.jl:116 _deepcopy_memory_t(x::Memor… 19╎ ╎ ╎ ╎ ╎ 19 @Base/…copy.jl:117 _deepcopy_memory_t(x::Memor… 8╎ ╎ ╎ ╎ ╎ 8 @Base/…copy.jl:118 _deepcopy_memory_t(x::Memor… 1╎ ╎ ╎ ╎ ╎ 2 @Base/…copy.jl:119 _deepcopy_memory_t(x::Memor… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:899 isbits(x::Any) 23╎ ╎ ╎ ╎ ╎ 333 @Base/…copy.jl:120 _deepcopy_memory_t(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 21 @Base/…opy.jl:129 deepcopy_internal(x::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 21 @Base/…ict.jl:19 haskey(d::IdDict{Any, Any},… ╎ ╎ ╎ ╎ ╎ ╎ 21 @Base/…ct.jl:185 in(k::Vector{UnitRange{Int… 20╎ ╎ ╎ ╎ ╎ ╎ 21 @Base/…ct.jl:95 get(d::IdDict{Any, Any}, k… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::IdDict{Any… ╎ ╎ ╎ ╎ ╎ ╎ 78 @Base/…opy.jl:132 deepcopy_internal(x::Vector… ╎ ╎ ╎ ╎ ╎ ╎ 11 @Base/boot.jl:732 Vector{UnitRange{Int64}}(:… 11╎ ╎ ╎ ╎ ╎ ╎ 11 @Base/…ot.jl:720 Vector{UnitRange{Int64}}(:… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ict.jl:84 setindex!(d::IdDict{Any, An… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…er.jl:58 getproperty(x::IdDict{Any, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:580 >>(x::Int64, y::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:573 >>(x::Int64, y::UInt64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ict.jl:88 setindex!(d::IdDict{Any, An… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…lue.jl:8 Base.RefValue{Int32}(x::Int… 61╎ ╎ ╎ ╎ ╎ ╎ 62 @Base/…ict.jl:89 setindex!(d::IdDict{Any, An… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:62 setproperty!(x::IdDict{Any… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ict.jl:90 setindex!(d::IdDict{Any, An… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:62 setproperty!(x::IdDict{Any… ╎ ╎ ╎ ╎ ╎ ╎ 210 @Base/…opy.jl:133 deepcopy_internal(x::Vector… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ler.jl:58 getproperty(x::Vector{UnitR… ╎ ╎ ╎ ╎ ╎ ╎ 73 @Base/…opy.jl:138 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 73 @Base/…ict.jl:19 haskey(d::IdDict{Any, Any}… 1╎ ╎ ╎ ╎ ╎ ╎ 73 @Base/…ct.jl:185 in(k::MemoryRef{UnitRange… 72╎ ╎ ╎ ╎ ╎ ╎ 72 @Base/…ct.jl:95 get(d::IdDict{Any, Any}, … ╎ ╎ ╎ ╎ ╎ ╎ 135 @Base/…opy.jl:142 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 36 @Base/…py.jl:101 deepcopy_internal(x::Memor… ╎ ╎ ╎ ╎ ╎ ╎ 36 @Base/…ct.jl:19 haskey(d::IdDict{Any, Any}… 1╎ ╎ ╎ ╎ ╎ ╎ 36 @Base/…ct.jl:185 in(k::Memory{UnitRange{I… 35╎ ╎ ╎ ╎ ╎ ╎ ╎ 35 @Base/…ct.jl:95 get(d::IdDict{Any, Any},… 8╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…py.jl:104 deepcopy_internal(x::Memor… 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…py.jl:107 _deepcopy_memory_t(x::Mem… 23╎ ╎ ╎ ╎ ╎ ╎ 89 @Base/…py.jl:109 _deepcopy_memory_t(x::Mem… ╎ ╎ ╎ ╎ ╎ ╎ 13 @Base/…ry.jl:170 copy(a::Memory{UnitRange… 13╎ ╎ ╎ ╎ ╎ ╎ ╎ 13 @Base/…ot.jl:659 Memory{UnitRange{Int64}… ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…ry.jl:171 copy(a::Memory{UnitRange… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/…ry.jl:134 unsafe_copyto!(dest::Me… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ot.jl:666 memoryref(mem::Memory{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 7 @Base/…ry.jl:116 unsafe_copyto!(dest::M… 7╎ ╎ ╎ ╎ ╎ ╎ ╎ 7 @Base/…em.jl:28 memmove(dst::Ptr{Nothi… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:84 setindex!(d::IdDict{Any, … 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:58 getproperty(x::IdDict{An… 40╎ ╎ ╎ ╎ ╎ ╎ 41 @Base/…ct.jl:89 setindex!(d::IdDict{Any, … 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:62 setproperty!(x::IdDict{A… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ct.jl:90 setindex!(d::IdDict{Any, … 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…er.jl:62 setproperty!(x::IdDict{A… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…opy.jl:144 deepcopy_internal(x::Memor… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…opy.jl:134 deepcopy_internal(x::Vector… 26╎ ╎ ╎ ╎ ╎ 26 @Base/…copy.jl:122 _deepcopy_memory_t(x::Memor… 26╎ ╎ ╎ ╎ ╎ 26 @Base/…copy.jl:123 _deepcopy_memory_t(x::Memor… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4348:23 [inlined] ijl_apply_generic at /source/src/gf.c:4586:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000077e6f9c09690 Total snapshots: 461. Utilization: 0% ╎461 @Base/task.jl:1170 wait_forever() 460╎ 461 @Base/task.jl:1248 wait() Progress: 100%|█████████████████████████████████████████| Time: 0:21:54 Test Summary: | Pass Total Time AIM selection | 4 4 22m37.1s [16] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/VCFTools/IWkMe/test/grm_test.jl:1 _ZN4llvm7hashing6detail23hash_combine_range_implIKjEENSt9enable_ifIXsrNS1_16is_hashable_dataIT_EE5valueENS_9hash_codeEE4typeEPS6_SB_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm14FoldingSetBase19FindNodeOrInsertPosERKNS_16FoldingSetNodeIDERPvRKNS0_14FoldingSetInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm15ScalarEvolution11getConstantEPNS_11ConstantIntE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) PkgEval terminated after 2727.44s: test duration exceeded the time limit