Package evaluation to test CausalInference on Julia 1.14.0-DEV.2435 (e1b2c72e96*) started at 2026-06-25T22:01:18.922 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.81s ################################################################################ # Installation # Installing CausalInference... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8e462317] + CausalInference v0.19.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [8e462317] + CausalInference v0.19.3 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [60701a23] + CliqueTrees v1.19.3 [08986516] + Collects v1.1.0 [861a8166] + Combinatorics v1.1.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [5789e2e9] + FileIO v1.19.0 [1a297f60] + FillArrays v1.16.0 [3821ddf9] + FixedSizeArrays v1.3.0 [1fa38f19] + Format v1.3.7 [86223c79] + Graphs v1.14.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [8ac3fa9e] + LRUCache v1.6.2 [2ab3a3ac] + LogExpFunctions v1.0.1 [aa2f6b4e] + LogarithmicNumbers v1.4.1 [1914dd2f] + MacroTools v0.5.16 [6fafb56a] + Memoization v0.2.2 ⌅ [626554b9] + MetaGraphs v0.8.1 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.27 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.38 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e506255] + ScopedValues v1.6.2 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3eeacb1d] + TabularDisplay v1.3.0 [ac1d9e8a] + ThreadsX v0.1.12 [28d57a85] + Transducers v0.4.85 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 36.5 s ✓ CausalInference 1 dependency successfully precompiled in 38 seconds. 144 already precompiled. Precompilation completed after 65.59s ################################################################################ # Testing # Testing CausalInference Status `/tmp/jl_MPVw8p/Project.toml` [8e462317] CausalInference v0.19.3 [60701a23] CliqueTrees v1.19.3 [861a8166] Combinatorics v1.1.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [86223c79] Graphs v1.14.0 [8ac3fa9e] LRUCache v1.6.2 [aa2f6b4e] LogarithmicNumbers v1.4.1 [6fafb56a] Memoization v0.2.2 ⌅ [626554b9] MetaGraphs v0.8.1 [b8a86587] NearestNeighbors v0.4.27 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [aea7be01] PrecompileTools v1.3.4 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [bd369af6] Tables v1.12.1 [3eeacb1d] TabularDisplay v1.3.0 [ac1d9e8a] ThreadsX v0.1.12 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MPVw8p/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [198e06fe] BangBang v0.4.9 [9718e550] Baselet v0.1.1 [8e462317] CausalInference v0.19.3 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [60701a23] CliqueTrees v1.19.3 [08986516] Collects v1.1.0 [861a8166] Combinatorics v1.1.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [5789e2e9] FileIO v1.19.0 [1a297f60] FillArrays v1.16.0 [3821ddf9] FixedSizeArrays v1.3.0 [1fa38f19] Format v1.3.7 [86223c79] Graphs v1.14.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 [8ac3fa9e] LRUCache v1.6.2 [2ab3a3ac] LogExpFunctions v1.0.1 [aa2f6b4e] LogarithmicNumbers v1.4.1 [1914dd2f] MacroTools v0.5.16 [6fafb56a] Memoization v0.2.2 ⌅ [626554b9] MetaGraphs v0.8.1 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.27 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.38 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.6.2 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3eeacb1d] TabularDisplay v1.3.0 [ac1d9e8a] ThreadsX v0.1.12 [28d57a85] Transducers v0.4.85 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. Test Summary: | Pass Total Time z-intervention | 2 2 5.5s Test Summary: | Pass Total Time exact oracle | 14 14 24.9s Test Summary: | Pass Total Time exact oracle parallel | 14 14 20.0s Test Summary: | Pass Total Time exact data | 50 50 17.3s WARNING: Method definition tails_and_adj_neighbors(Any, Any, Any) in module CausalInference at /home/pkgeval/.julia/packages/CausalInference/XJeA1/src/ges.jl:203 overwritten in module Main at /home/pkgeval/.julia/packages/CausalInference/XJeA1/test/operators.jl:13. WARNING: Method definition adj_neighbors(Any, Any, Any) in module CausalInference at /home/pkgeval/.julia/packages/CausalInference/XJeA1/src/ges.jl:208 overwritten in module Main at /home/pkgeval/.julia/packages/CausalInference/XJeA1/test/operators.jl:18. Test Summary: | Pass Total Time operators randgraphs | 150000 150000 0.5s Test Summary: | Pass Total Time nextCPDAG randgraphs | 60 60 2.4s Test Summary: | Pass Total Time Sorted intersection | 2 2 0.5s Test Summary: | Pass Total Time GES example | 1 1 11.4s Skipping parallel tests. seed = 123 cond(C) 29.200280142337473 skel edges 16 skel missing edges 0 skel wrong edges 0 vertices 8 edges 16 ges not in skel 7 pc not in skel 0 cpdag undir 2 dir 14 ges missing edges 10 ges wrong edges 18 pc missing edges 0 pc wrong edges 0 timing: PC 0.044288336119999994 GES 0.07729015918000001 GES-P 0.0 (0.11098316720000001) Test Summary: | Pass Broken Total Time GES randdag | 14336 50 14386 20.0s Test Summary: | Pass Total Time ges vs GES from pcalg (R) | 7 7 15.5s Zig-Zag: Error During Test at /home/pkgeval/.julia/packages/CausalInference/XJeA1/test/sampler.jl:4 Got exception outside of a @test MethodError: no method matching sorted_union_(::Graphs.FrozenVector{Int64}, ::Graphs.FrozenVector{Int64}) The function `sorted_union_` exists, but no method is defined for this combination of argument types. Closest candidates are: sorted_union_(!Matched::Vector{T}, !Matched::Vector{T}) where T @ CausalInference ~/.julia/packages/CausalInference/XJeA1/src/pdag.jl:146 Stacktrace: [1] neighbors_adjacent(g::SimpleDiGraph{Int64}, x::Int64) @ CausalInference ~/.julia/packages/CausalInference/XJeA1/src/pdag.jl:142 [2] count_moves_new(g::SimpleDiGraph{Int64}, κ::Int64, balance::typeof(CausalInference.metropolis_balance), prior::CausalInference.var"#causalzigzag##2#causalzigzag##3", score::GaussianScore{Float64, Matrix{Float64}}, coldness::Float64, total::Int64, dir::Symbol) @ CausalInference ~/.julia/packages/CausalInference/XJeA1/src/sampler.jl:143 [inlined] [3] count_moves_new(g::SimpleDiGraph{Int64}, κ::Int64, balance::typeof(CausalInference.metropolis_balance), prior::CausalInference.var"#causalzigzag##2#causalzigzag##3", score::GaussianScore{Float64, Matrix{Float64}}, coldness::Float64, total::Int64) @ CausalInference ~/.julia/packages/CausalInference/XJeA1/src/sampler.jl:134 [inlined] [4] macro expansion @ ~/.julia/packages/CausalInference/XJeA1/src/sampler.jl:239 [inlined] [5] macro expansion @ ~/.julia/packages/ProgressMeter/N660J/src/ProgressMeter.jl:1026 [inlined] [6] causalzigzag(n::Int64, G::Tuple{SimpleDiGraph{Int64}, Int64}; balance::typeof(CausalInference.metropolis_balance), prior::CausalInference.var"#causalzigzag##2#causalzigzag##3", score::GaussianScore{Float64, Matrix{Float64}}, coldness::Float64, σ::Float64, ρ::Float64, naive::Bool, κ::Int64, iterations::Int64, verbose::Bool, save::Bool) @ CausalInference ~/.julia/packages/CausalInference/XJeA1/src/sampler.jl:223 [7] top-level scope @ ~/.julia/packages/CausalInference/XJeA1/test/sampler.jl:5 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [9] macro expansion @ ~/.julia/packages/CausalInference/XJeA1/test/sampler.jl:24 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [11] top-level scope @ ~/.julia/packages/CausalInference/XJeA1/test/runtests.jl:9 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core boot.jl:522 [15] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [16] _start() @ Base client.jl:596 Test Summary: | Error Total Time Zig-Zag | 1 1 15.2s RNG of the outermost testset: Xoshiro(0x79391339c7c62fde, 0x6e8009b80efda4b5, 0xd45b0dc8bfc6ed48, 0x03ffc5cfa0c2eb4c, 0x067eddfb18f62f79) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/CausalInference/XJeA1/test/sampler.jl:4 in expression starting at /home/pkgeval/.julia/packages/CausalInference/XJeA1/test/runtests.jl:9 Testing failed after 182.02s ERROR: LoadError: Package CausalInference errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 284.14s: package tests unexpectedly errored