Package evaluation to test OMOPCommonDataModel on Julia 1.14.0-DEV.2407 (ce8c59448a*) started at 2026-06-18T12:11:30.636 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.94s ################################################################################ # Installation # Installing OMOPCommonDataModel... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [ba65db9e] + OMOPCommonDataModel v0.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [ffbed154] + DocStringExtensions v0.9.5 [ba65db9e] + OMOPCommonDataModel v0.1.5 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.3+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 1.45s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 1.2 s ✓ Adapt 5.7 s ✓ OMOPCommonDataModel 42.7 s ✓ PrettyTables 2.0 s ✓ StructArrays 88.7 s ✓ DataFrames 5 dependencies successfully precompiled in 141 seconds. 78 already precompiled. Precompilation completed after 167.94s ################################################################################ # Testing # Testing OMOPCommonDataModel Status `/tmp/jl_KFu548/Project.toml` [a93c6f00] DataFrames v1.8.2 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [ba65db9e] OMOPCommonDataModel v0.1.5 [8162dcfd] PrettyPrint v0.2.0 ⌅ [09ab397b] StructArrays v0.4.4 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [44cfe95a] Pkg v1.14.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KFu548/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 ⌅ [79e6a3ab] Adapt v2.4.0 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [d7ba0133] Git v1.5.0 [b5f81e59] IOCapture v1.0.0 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [d0879d2d] MarkdownAST v0.1.3 [e1d29d7a] Missings v1.2.0 [ba65db9e] OMOPCommonDataModel v0.1.5 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.3.2 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.4 ⌅ [09ab397b] StructArrays v0.4.4 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.3+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" [ Info: Reading from input file "/home/pkgeval/.julia/packages/OMOPCommonDataModel/a3ZSG/assets/OMOP-CDM-sql-server-ddl.txt" [ Info: Generated 39 types [ Info: Wrote to output file "/tmp/jl_T9bdqr/autogenerated.jl" ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl:719 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4350:23 [inlined] ijl_apply_generic at /source/src/gf.c:4588:12 jl_apply at /source/src/julia.h:2402:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000751d12a9f850 Total snapshots: 677. Utilization: 0% ╎677 @Base/task.jl:1170 wait_forever() 676╎ 677 @Base/task.jl:1248 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4350:23 [inlined] ijl_apply_generic at /source/src/gf.c:4588:12 jl_apply at /source/src/julia.h:2402:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 13931119 (Pool: 13930434; Big: 685); GC: 14 PkgEval terminated after 2721.83s: test duration exceeded the time limit