Package evaluation to test Ecophys on Julia 1.14.0-DEV.2407 (ce8c59448a*) started at 2026-06-18T16:01:24.641 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.97s ################################################################################ # Installation # Installing Ecophys... Resolving package versions... Installed Ecophys ─ v0.1.2 Updating `~/.julia/environments/v1.14/Project.toml` [19467474] + Ecophys v0.1.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.44 [38540f10] + CommonSolve v0.2.7 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [ffbed154] + DocStringExtensions v0.9.5 [19467474] + Ecophys v0.1.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 ⌅ [f2b01f46] + Roots v2.3.0 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [1986cc42] + Unitful v1.28.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.3+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.2 s ✓ Roots → RootsUnitfulExt 6.6 s ✓ Ecophys 2 dependencies successfully precompiled in 13 seconds. 86 already precompiled. Precompilation completed after 36.6s ################################################################################ # Testing # Testing Ecophys Status `/tmp/jl_qlBiiq/Project.toml` [4c88cf16] Aqua v0.8.16 [e30172f5] Documenter v1.17.0 [19467474] Ecophys v0.1.2 ⌅ [f2b01f46] Roots v2.3.0 [1986cc42] Unitful v1.28.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qlBiiq/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [4c88cf16] Aqua v0.8.16 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.7 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [19467474] Ecophys v0.1.2 [d7ba0133] Git v1.5.0 [b5f81e59] IOCapture v1.0.0 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [2792f1a3] RegistryInstances v0.1.0 ⌅ [f2b01f46] Roots v2.3.0 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [ec057cc2] StructUtils v2.8.2 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.3+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl:719 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Persistent tasks: Test Failed at /home/pkgeval/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:39 Expression: !(has_persistent_tasks(package; kwargs...)) Evaluated: !(has_persistent_tasks(Base.PkgId(Base.UUID("19467474-d12d-47c9-939f-3e50fbfd93ad"), "Ecophys"))) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [2] test_persistent_tasks(package::Base.PkgId; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:39 [3] test_persistent_tasks(package::Base.PkgId) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:35 [inlined] [4] test_persistent_tasks(package::Module; kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:44 [inlined] [5] test_persistent_tasks(package::Module) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:43 [inlined] [6] macro expansion @ ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:109 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [8] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/Aqua.jl:109 ┌ Warning: The `verbose` keyword is deprecated. Pass a `tracks=Roots.Tracks()` object to the solver to see a trace. │ caller = solve(𝑭𝑿::ZeroProblem{Ecophys.Photosynthesis.var"#solve_energy_balance##0#solve_energy_balance##1"{C3{Float64}, simplegb{Float64}, SimpleOptical{Float64}, Float64, Float64, Float64, Float64, Float64, Float64, Float64, Float64}, Tuple{Float64, Float64}}, M::A42, p::Nothing; verbose::Bool, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{tracks::Roots.NullTracks, xatol::Float64, maxfnevals::Int64}}) at find_zero.jl:510 [inlined] └ @ Roots ~/.julia/packages/Roots/y0UMG/src/find_zero.jl:510 Results of univariate zero finding: * Converged to: 304.3160872600795 * Algorithm: A42() * iterations: 2 * function evaluations ≈ 6 * stopped as x_n ≈ x_{n-1} using atol=xatol, rtol=xrtol Trace: (a₀, b₀) = ( 288, 308 ) (a₁, b₁) = ( 288, 304.49692261926748 ) (a₂, b₂) = ( 304.30908726007937, 304.31608726007948 ) ┌ Warning: The `verbose` keyword is deprecated. Pass a `tracks=Roots.Tracks()` object to the solver to see a trace. │ caller = solve(𝑭𝑿::ZeroProblem{Ecophys.Photosynthesis.var"#solve_energy_balance##0#solve_energy_balance##1"{C4{Float64}, simplegb{Float64}, SimpleOptical{Float64}, Float64, Float64, Float64, Float64, Float64, Float64, Float64, Float64}, Tuple{Float64, Float64}}, M::A42, p::Nothing; verbose::Bool, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{tracks::Roots.NullTracks, xatol::Float64, maxfnevals::Int64}}) at find_zero.jl:510 [inlined] └ @ Roots ~/.julia/packages/Roots/y0UMG/src/find_zero.jl:510 Results of univariate zero finding: * Converged to: 303.6452686718274 * Algorithm: A42() * iterations: 2 * function evaluations ≈ 6 * stopped as x_n ≈ x_{n-1} using atol=xatol, rtol=xrtol Trace: (a₀, b₀) = ( 288, 308 ) (a₁, b₁) = ( 303.53715112565573, 308 ) (a₂, b₂) = ( 303.63826867182729, 303.64526867182741 ) Test Summary: | Pass Fail Total Time Photosynthesis | 129 1 130 3m06.9s Doctests: Ecophys | 1 1 32.8s Aqua | 9 1 10 1m48.5s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Stale dependencies | 1 1 4.6s Compat bounds | 4 4 0.7s Piracy | 1 1 0.1s Persistent tasks | 1 1 1m20.8s C3 photosynthesis properties | 9 9 2.8s C4 photosynthesis properties | 8 8 0.8s RNG of the outermost testset: Random.Xoshiro(0xa833490651697600, 0x24f31ee4aee45162, 0x056e60c327ce33b8, 0xa4ea278ac7e68f34, 0xb49b9e4f9c6b572a) ERROR: LoadError: Some tests did not pass: 129 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Ecophys/AkGX9/test/runtests.jl:6 Testing failed after 203.13s ERROR: LoadError: Package Ecophys errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 315.95s: package has test failures