Package evaluation to test Kora on Julia 1.14.0-DEV.2336 (83323976df*) started at 2026-06-16T06:05:27.250 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 12.38s ################################################################################ # Installation # Installing Kora... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [63f594c6] + Kora v1.0.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [621f4979] + AbstractFFTs v1.5.0 [85c772de] + AbstractNumbers v0.2.5 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [13072b0f] + AxisAlgorithms v1.1.0 [e28b5b4c] + Bootstrap v2.4.0 ⌅ [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 ⌅ [5a033b19] + CurveFit v0.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 ⌅ [0703355e] + DimensionalData v0.29.27 [fcd2136c] + DiskArrayTools v0.1.12 [3c3547ce] + DiskArrays v0.4.21 [31c24e10] + Distributions v0.25.126 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [411431e0] + Extents v0.1.6 [b86e33f2] + FFTA v0.3.1 [bf96fef3] + FieldMetadata v0.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [4c728ea3] + Flatten v0.4.3 [f6369f11] + ForwardDiff v1.4.1 [38e38edf] + GLM v1.9.5 [c27321d9] + Glob v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [85a1e053] + Interfaces v0.3.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.14 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [5ab0869b] + KernelDensity v0.6.12 [63f594c6] + Kora v1.0.0 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] + LineSearches v7.5.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [4744a3fa] + ModelParameters v0.4.6 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 [a15396b6] + OnlineStats v1.7.4 [925886fa] + OnlineStatsBase v1.7.3 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [fad6cfc8] + ParallelUtilities v0.8.6 [69de0a69] + Parsers v2.8.5 [f27b6e38] + Polynomials v4.1.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [91cefc8d] + PrecompileSignatures v3.0.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.3 [bbac0a1f] + WeightedOnlineStats v0.6.3 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [90b8fcef] + YAXArrayBase v0.7.11 ⌅ [c21b50f5] + YAXArrays v0.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.15s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 5.0 s ✓ CurveFit 3.6 s ✓ MLBase 11.9 s ✓ Bootstrap 5.7 s ✓ WeightedOnlineStats 14.2 s ✓ YAXArrays 62.8 s ✓ Kora 6 dependencies successfully precompiled in 105 seconds. 192 already precompiled. Precompilation completed after 129.27s ################################################################################ # Testing # Testing Kora Status `/tmp/jl_iP7N6i/Project.toml` [63f594c6] Kora v1.0.0 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_iP7N6i/Manifest.toml` [47edcb42] ADTypes v1.22.0 [621f4979] AbstractFFTs v1.5.0 [85c772de] AbstractNumbers v0.2.5 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [13072b0f] AxisAlgorithms v1.1.0 [e28b5b4c] Bootstrap v2.4.0 ⌅ [179af706] CFTime v0.1.4 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 ⌅ [5a033b19] CurveFit v0.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 ⌅ [0703355e] DimensionalData v0.29.27 [fcd2136c] DiskArrayTools v0.1.12 [3c3547ce] DiskArrays v0.4.21 [31c24e10] Distributions v0.25.126 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [411431e0] Extents v0.1.6 [b86e33f2] FFTA v0.3.1 [bf96fef3] FieldMetadata v0.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [4c728ea3] Flatten v0.4.3 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 [c27321d9] Glob v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [85a1e053] Interfaces v0.3.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [5ab0869b] KernelDensity v0.6.12 [63f594c6] Kora v1.0.0 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 ⌃ [d3d80556] LineSearches v7.5.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [f0e99cf1] MLBase v0.9.2 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [4744a3fa] ModelParameters v0.4.6 [46d2c3a1] MuladdMacro v0.2.4 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 [a15396b6] OnlineStats v1.7.4 [925886fa] OnlineStatsBase v1.7.3 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [fad6cfc8] ParallelUtilities v0.8.6 [69de0a69] Parsers v2.8.5 [f27b6e38] Polynomials v4.1.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [91cefc8d] PrecompileSignatures v3.0.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.11 ⌅ [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.3 [bbac0a1f] WeightedOnlineStats v0.6.3 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [90b8fcef] YAXArrayBase v0.7.11 ⌅ [c21b50f5] YAXArrays v0.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Statistical Functions | 12 12 1.7s Test Summary: | Pass Total Time Metrics | 7 7 12.5s Test Summary: | Pass Total Time Size Classes and Cover | 14 14 1.1s Test Summary: | Pass Total Time Coral Mortality | 6 6 0.0s Test Summary: | Pass Total Time Recruitment | 5 5 0.1s Test Summary: | Pass Total Time Fitted Models | 17 17 0.2s Test Summary: | Pass Total Time ReefState and Environment | 17 17 8.8s ┌ Info: Full simulation run │ elapsed_seconds = 19.34 │ n_timesteps = 20 └ n_locations = 3 Test Summary: | Pass Total Time Integration | 25 25 30.8s Test Summary: | Pass Total Time Model I/O | 30 30 5.8s Test Summary: | Pass Total Time Regression | 500 500 0.3s Test Summary: | Pass Total Time deploy_corals! Function | 103 103 5.8s Testing Kora tests passed Testing completed after 126.0s PkgEval succeeded after 282.69s