Package evaluation to test CodonMolecularEvolution on Julia 1.14.0-DEV.2362 (adf6a0d284*) started at 2026-06-16T03:41:07.964 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.1s ################################################################################ # Installation # Installing CodonMolecularEvolution... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.16.0 Installed DataStructures ────────────── v0.19.5 Installed MacroTools ────────────────── v0.5.16 Installed FFTA ──────────────────────── v0.3.1 Installed FilePathsBase ─────────────── v0.9.24 Installed ConstructionBase ──────────── v1.6.0 Installed StringViews ───────────────── v1.3.7 Installed AliasTables ───────────────── v1.1.3 Installed CodecZlib ─────────────────── v0.7.8 Installed Adapt ─────────────────────── v4.6.1 Installed KernelDensity ─────────────── v0.6.12 Installed InlineStrings ─────────────── v1.4.5 Installed HypergeometricFunctions ───── v0.3.28 Installed SimpleUnPack ──────────────── v1.1.0 Installed CSV ───────────────────────── v0.10.16 Installed StatsBase ─────────────────── v0.34.11 Installed OrderedCollections ────────── v1.8.2 Installed ArrayInterface ────────────── v7.25.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed Suppressor ────────────────── v0.2.8 Installed Compat ────────────────────── v4.18.1 Installed ProgressLogging ───────────── v0.1.6 Installed NNlib ─────────────────────── v0.9.36 Installed InvertedIndices ───────────── v1.3.1 Installed InitialValues ─────────────── v0.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed ConsoleProgressMonitor ────── v0.1.2 Installed Atomix ────────────────────── v1.1.3 Installed CEnum ─────────────────────── v0.5.0 Installed KrylovKit ─────────────────── v0.9.5 Installed PrecompileTools ───────────── v1.3.4 Installed ArgCheck ──────────────────── v2.5.0 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.11.0 Installed SentinelArrays ────────────── v1.4.10 Installed DataValueInterfaces ───────── v1.0.0 Installed MCMCDiagnosticTools ───────── v0.3.18 Installed StaticArraysCore ──────────── v1.4.4 Installed CodonMolecularEvolution ───── v0.2.0 Installed StaticArrays ──────────────── v1.9.18 Installed ChainRulesCore ────────────── v1.26.1 Installed LogDensityProblems ────────── v2.2.0 Installed LoggingExtras ─────────────── v1.2.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed Ratios ────────────────────── v0.4.5 Installed IntegerMathUtils ──────────── v0.1.3 Installed GPUArraysCore ─────────────── v0.2.0 Installed IrrationalConstants ───────── v0.2.6 Installed TerminalLoggers ───────────── v0.1.7 Installed QuadGK ────────────────────── v2.11.3 Installed BangBang ──────────────────── v0.4.9 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed StringManipulation ────────── v0.4.4 Installed AxisAlgorithms ────────────── v1.1.0 Installed Interpolations ────────────── v0.15.1 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed PrettyTables ──────────────── v2.4.0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.5 Installed KernelAbstractions ────────── v0.9.41 Installed PackageExtensionCompat ────── v1.0.2 Installed Rmath ─────────────────────── v0.9.0 Installed Distributions ─────────────── v0.25.126 Installed WoodburyMatrices ──────────── v1.1.0 Installed BioGenerics ───────────────── v0.1.5 Installed MuladdMacro ───────────────── v0.2.4 Installed ScopedValues ──────────────── v1.6.2 Installed UnsafeAtomics ─────────────── v0.3.1 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed InverseFunctions ──────────── v0.1.17 Installed SpecialFunctions ──────────── v2.8.0 Installed Reexport ──────────────────── v1.2.2 Installed AbstractMCMC ──────────────── v5.15.1 Installed PtrArrays ─────────────────── v1.4.0 Installed FASTX ─────────────────────── v2.1.7 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed IntervalSets ──────────────── v0.7.14 Installed Preferences ───────────────── v1.5.2 Installed ScientificTypesBase ───────── v3.1.0 Installed DataFrames ────────────────── v1.8.2 Installed EllipticalSliceSampling ───── v2.0.0 Installed BenchmarkTools ────────────── v1.8.0 Installed WeakRefStrings ────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed VectorInterface ───────────── v0.5.0 Installed Automa ────────────────────── v1.2.0 Installed PDMats ────────────────────── v0.11.37 Installed ParameterHandling ─────────── v0.5.0 Installed Primes ────────────────────── v0.5.7 Installed Crayons ───────────────────── v4.1.1 Installed JLLWrappers ───────────────── v1.8.0 Installed MCMCChains ────────────────── v6.0.7 Installed NLopt ─────────────────────── v1.2.1 Installed AxisArrays ────────────────── v0.4.8 Installed IterTools ─────────────────── v1.10.0 Installed RangeArrays ───────────────── v0.3.2 Installed WorkerUtilities ───────────── v1.6.1 Installed NLopt_jll ─────────────────── v2.11.0+0 Installed DocStringExtensions ───────── v0.9.5 Installed NaturalSort ───────────────── v1.0.0 Installed StatisticalTraits ─────────── v3.5.0 Installed MolecularEvolution ────────── v0.2.7 Installed MLJModelInterface ─────────── v1.12.1 Installed Accessors ─────────────────── v0.1.44 Installing 4 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 323.5 KiB Installed artifact testfiles 6.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [6511b2a3] + CodonMolecularEvolution v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.15.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [67c07d97] + Automa v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.9 [6e4b80f9] + BenchmarkTools v1.8.0 [47718e42] + BioGenerics v0.1.5 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [6511b2a3] + CodonMolecularEvolution v0.2.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.126 [ffbed154] + DocStringExtensions v0.9.5 [cad2338a] + EllipticalSliceSampling v2.0.0 [c2308a5c] + FASTX v2.1.7 [b86e33f2] + FFTA v0.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [63c18a36] + KernelAbstractions v0.9.41 [5ab0869b] + KernelDensity v0.6.12 ⌅ [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.2.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [c7f686f2] + MCMCChains v6.0.7 [be115224] + MCMCDiagnosticTools v0.3.18 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [9f975960] + MolecularEvolution v0.2.7 [46d2c3a1] + MuladdMacro v0.2.4 [76087f3c] + NLopt v1.2.1 [872c559c] + NNlib v0.9.36 [c020b1a1] + NaturalSort v1.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [65ce6f38] + PackageExtensionCompat v1.0.2 [2412ca09] + ParameterHandling v0.5.0 [69de0a69] + Parsers v2.8.5 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [91c51154] + SentinelArrays v1.4.10 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.4 ⌅ [354b36f9] + StringViews v1.3.7 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.1 ⌅ [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.3 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.11.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.2 s ✓ MacroTools 1.3 s ✓ InlineStrings 0.5 s ✓ Reexport 0.9 s ✓ ConstructionBase 1.7 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.6 s ✓ StatsAPI 0.9 s ✓ IterTools 0.8 s ✓ IntervalSets 0.6 s ✓ CEnum 0.9 s ✓ StringViews 0.6 s ✓ ArgCheck 1.1 s ✓ TranscodingStreams 0.6 s ✓ LaTeXStrings 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.5 s ✓ PtrArrays 1.0 s ✓ VectorInterface 0.5 s ✓ NaturalSort 0.6 s ✓ Adapt 0.6 s ✓ DataAPI 3.2 s ✓ UnsafeAtomics 0.6 s ✓ InvertedIndices 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.9 s ✓ AbstractTrees 0.5 s ✓ SimpleUnPack 1.3 s ✓ InitialValues 0.5 s ✓ MuladdMacro 0.8 s ✓ AbstractFFTs 0.7 s ✓ WorkerUtilities 2.2 s ✓ FillArrays 0.6 s ✓ IntegerMathUtils 0.6 s ✓ RangeArrays 1.2 s ✓ OrderedCollections 0.6 s ✓ HashArrayMappedTries 0.9 s ✓ DocStringExtensions 1.3 s ✓ OffsetArrays 0.5 s ✓ IteratorInterfaceExtensions 0.5 s ✓ PackageExtensionCompat 1.6 s ✓ Crayons 0.5 s ✓ Suppressor 0.9 s ✓ ProgressLogging 1.0 s ✓ Requires 2.4 s ✓ ProgressMeter 2.0 s ✓ WoodburyMatrices 1.6 s ✓ SentinelArrays 1.2 s ✓ LoggingExtras 2.5 s ✓ PDMats 0.9 s ✓ Compat 1.2 s ✓ Preferences 1.1 s ✓ ScientificTypesBase 0.5 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.5 s ✓ IntervalSets → IntervalSetsRandomExt 0.5 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 0.7 s ✓ BioGenerics 0.7 s ✓ CodecZlib 1.9 s ✓ Statistics → SparseArraysExt 0.5 s ✓ IntervalSets → IntervalSetsStatisticsExt 0.7 s ✓ AliasTables 0.9 s ✓ ArrayInterface 1.8 s ✓ Adapt → AdaptSparseArraysExt 1.0 s ✓ GPUArraysCore 0.7 s ✓ Missings 0.8 s ✓ PooledArrays 0.7 s ✓ Atomix 1.0 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.7 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 0.6 s ✓ LeftChildRightSiblingTrees 3.9 s ✓ AbstractFFTs → AbstractFFTsTestExt 2.3 s ✓ FillArrays → FillArraysSparseArraysExt 1.0 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ Primes 3.5 s ✓ DataStructures 0.7 s ✓ ScopedValues 1.2 s ✓ LogExpFunctions 1.5 s ✓ LogDensityProblems 0.6 s ✓ OffsetArrays → OffsetArraysAdaptExt 0.5 s ✓ TableTraits 2.9 s ✓ KrylovKit 0.6 s ✓ Ratios 1.3 s ✓ ConsoleProgressMonitor 2.0 s ✓ AxisAlgorithms 2.2 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 1.6 s ✓ PrecompileTools 1.9 s ✓ JLLWrappers 1.1 s ✓ StatisticalTraits 1.9 s ✓ AxisArrays 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.8 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 4.7 s ✓ Accessors 1.6 s ✓ TerminalLoggers 2.1 s ✓ FFTA 1.0 s ✓ SortingAlgorithms 1.9 s ✓ QuadGK 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1.7 s ✓ Tables 2.3 s ✓ ChainRulesCore 2.1 s ✓ FilePathsBase 3.4 s ✓ StringManipulation 13.1 s ✓ StaticArrays 17.2 s ✓ Automa 3.2 s ✓ RecipesBase 7.3 s ✓ Parsers 1.8 s ✓ NLopt_jll 1.8 s ✓ Rmath_jll 2.0 s ✓ OpenSpecFun_jll 3.4 s ✓ MLJModelInterface 2.0 s ✓ Accessors → TestExt 2.0 s ✓ Accessors → IntervalSetsExt 1.9 s ✓ Accessors → LinearAlgebraExt 4.6 s ✓ StatsBase 1.7 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.5 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2.7 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.0 s ✓ KrylovKit → KrylovKitChainRulesCoreExt 2.8 s ✓ FilePathsBase → FilePathsBaseTestExt 0.9 s ✓ FilePathsBase → FilePathsBaseMmapExt 28.8 s ✓ PrettyTables 1.8 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.9 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.8 s ✓ Adapt → AdaptStaticArraysExt 2.2 s ✓ FillArrays → FillArraysStaticArraysExt 1.9 s ✓ Accessors → StaticArraysExt 18.5 s ✓ FASTX 1.5 s ✓ IntervalSets → IntervalSetsRecipesBaseExt 2.4 s ✓ JSON 1.0 s ✓ InlineStrings → ParsersExt 2.2 s ✓ NLopt 1.6 s ✓ Rmath 4.9 s ✓ SpecialFunctions 1.7 s ✓ BangBang 2.2 s ✓ PDMats → StatsBaseExt 5.7 s ✓ ParameterHandling 74.4 s ✓ DataFrames 8.8 s ✓ KernelAbstractions ERROR: LoadError: syntax: invalid assignment location "(sitp::ScaledInterpolation{T, 1}, x::Number, y::Int) where T" around /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [3] top-level scope  @ ~/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:456  [4] include(mod::Module, _path::String)  @ Base Base.jl:325  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core boot.jl:522  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [9] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [11] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:1 in expression starting at stdin:5 ✗ Interpolations 10.8 s ✓ BenchmarkTools 2.8 s ✓ WeakRefStrings 4.1 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2.4 s ✓ HypergeometricFunctions 5.1 s ✓ AbstractMCMC 1.3 s ✓ BangBang → BangBangChainRulesCoreExt 1.5 s ✓ BangBang → BangBangTablesExt 2.2 s ✓ BangBang → BangBangStaticArraysExt 5.3 s ✓ BangBang → BangBangDataFramesExt 3.8 s ✓ KernelAbstractions → SparseArraysExt 2.4 s ✓ KernelAbstractions → LinearAlgebraExt 21.6 s ✓ CSV 2.9 s ✓ StatsFuns 14.4 s ✓ NNlib 3.4 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 1.1 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 10.6 s ✓ Distributions 2.7 s ✓ NNlib → NNlibSpecialFunctionsExt 4.8 s ✓ Distributions → DistributionsTestExt 4.4 s ✓ Distributions → DistributionsChainRulesCoreExt 7.8 s ✓ MolecularEvolution 6.3 s ✓ MCMCDiagnosticTools 5.1 s ✓ EllipticalSliceSampling ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"), "Interpolations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:6  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:1 in expression starting at stdin:5 ✗ KernelDensity ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("5ab0869b-81aa-558d-bb23-cbf5423bbe9b"), "KernelDensity") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base module.jl:101  [11] top-level scope  @ ~/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:10  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:1 in expression starting at stdin:5 ✗ MCMCChains ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"), "Interpolations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/CodonMolecularEvolution/dBmJx/src/CodonMolecularEvolution.jl:4  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/CodonMolecularEvolution/dBmJx/src/CodonMolecularEvolution.jl:1 in expression starting at stdin:5 ✗ CodonMolecularEvolution 164 dependencies successfully precompiled in 522 seconds. 24 already precompiled. Precompilation completed after 550.92s ################################################################################ # Testing # Testing CodonMolecularEvolution Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_PeBUWx/Project.toml` [6511b2a3] + CodonMolecularEvolution v0.2.0 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.8.2 [c2308a5c] ↑ FASTX v2.1.3 ⇒ v2.1.7 [9f975960] ↑ MolecularEvolution v0.1.0 ⇒ v0.2.7 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_PeBUWx/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.15.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [67c07d97] ↑ Automa v1.0.0 ⇒ v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.9 [6e4b80f9] + BenchmarkTools v1.8.0 [47718e42] ↑ BioGenerics v0.1.2 ⇒ v0.1.5 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [49dc2e85] - Calculus v0.5.1 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [6511b2a3] + CodonMolecularEvolution v0.2.0 [34da2185] ↑ Compat v4.9.0 ⇒ v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] ↑ DataAPI v1.15.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.8.2 [864edb3b] ↑ DataStructures v0.18.15 ⇒ v0.19.5 [31c24e10] ↑ Distributions v0.25.100 ⇒ v0.25.126 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [fa6b7ba4] - DualNumbers v0.6.8 [cad2338a] + EllipticalSliceSampling v2.0.0 [c2308a5c] ↑ FASTX v2.1.3 ⇒ v2.1.7 [b86e33f2] + FFTA v0.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.5.0 ⇒ v1.16.0 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] ↑ InlineStrings v1.4.0 ⇒ v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [c8e1da08] + IterTools v1.10.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [63c18a36] + KernelAbstractions v0.9.41 [5ab0869b] + KernelDensity v0.6.12 ⌅ [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0 ⌅ [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.2.0 ⌅ [2ab3a3ac] ↑ LogExpFunctions v0.3.25 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [c7f686f2] + MCMCChains v6.0.7 [be115224] + MCMCDiagnosticTools v0.3.18 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0 [9f975960] ↑ MolecularEvolution v0.1.0 ⇒ v0.2.7 [46d2c3a1] + MuladdMacro v0.2.4 [76087f3c] + NLopt v1.2.1 [872c559c] + NNlib v0.9.36 [77ba4419] - NaNMath v1.0.2 [c020b1a1] + NaturalSort v1.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] ↑ OrderedCollections v1.6.2 ⇒ v1.8.2 [90014a1f] ↑ PDMats v0.11.17 ⇒ v0.11.37 [65ce6f38] + PackageExtensionCompat v1.0.2 [2412ca09] + ParameterHandling v0.5.0 [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.5 [aea7be01] ↑ PrecompileTools v1.1.2 ⇒ v1.3.4 [21216c6a] ↑ Preferences v1.4.0 ⇒ v1.5.2 ⌅ [08abe8d2] ↑ PrettyTables v2.3.1 ⇒ v2.4.0 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] ↑ QuadGK v2.8.2 ⇒ v2.11.3 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [91c51154] ↑ SentinelArrays v1.4.1 ⇒ v1.4.10 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] ↑ SortingAlgorithms v1.1.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.6.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.0 ⇒ v0.34.11 ⌅ [4c63d2b9] ↑ StatsFuns v1.3.0 ⇒ v1.5.2 [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.4 ⌅ [354b36f9] ↑ StringViews v1.3.3 ⇒ v1.3.7 [fd094767] + Suppressor v0.2.8 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] ↑ TranscodingStreams v0.9.13 ⇒ v0.11.3 [013be700] + UnsafeAtomics v0.3.1 ⌅ [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.3 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] - MbedTLS_jll v2.28.2+1 [079eb43e] + NLopt_jll v2.11.0+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0 [0dad84c5] - ArgTools v1.1.1 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] - Downloads v1.6.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] - LibCURL v0.6.4 [76f85450] - LibGit2 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.14.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] - NetworkOptions v1.2.0 [44cfe95a] - Pkg v1.10.0 [de0858da] ~ Printf ⇒ v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.13.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [a4e569a6] - Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.5+1 ⇒ v1.5.2+0 [deac9b47] - LibCURL_jll v8.4.0+0 [e37daf67] - LibGit2_jll v1.6.4+0 [29816b5a] - LibSSH2_jll v1.11.0+1 [14a3606d] - MozillaCACerts_jll v2023.1.10 [4536629a] ↑ OpenBLAS_jll v0.3.23+2 ⇒ v0.3.33+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.2+0 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] - nghttp2_jll v1.52.0+1 [3f19e933] - p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_PeBUWx/Project.toml` [6511b2a3] CodonMolecularEvolution v0.2.0 [a93c6f00] DataFrames v1.8.2 [c2308a5c] FASTX v2.1.7 [9f975960] MolecularEvolution v0.2.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_PeBUWx/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.15.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.25.0 [a9b6321e] Atomix v1.1.3 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.9 [6e4b80f9] BenchmarkTools v1.8.0 [47718e42] BioGenerics v0.1.5 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [6511b2a3] CodonMolecularEvolution v0.2.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.126 [ffbed154] DocStringExtensions v0.9.5 [cad2338a] EllipticalSliceSampling v2.0.0 [c2308a5c] FASTX v2.1.7 [b86e33f2] FFTA v0.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.41 [5ab0869b] KernelDensity v0.6.12 ⌅ [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] LogDensityProblems v2.2.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌅ [c7f686f2] MCMCChains v6.0.7 [be115224] MCMCDiagnosticTools v0.3.18 [e80e1ace] MLJModelInterface v1.12.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [9f975960] MolecularEvolution v0.2.7 [46d2c3a1] MuladdMacro v0.2.4 [76087f3c] NLopt v1.2.1 [872c559c] NNlib v0.9.36 [c020b1a1] NaturalSort v1.0.0 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [65ce6f38] PackageExtensionCompat v1.0.2 [2412ca09] ParameterHandling v0.5.0 [69de0a69] Parsers v2.8.5 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 ⌅ [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.2 [91c51154] SentinelArrays v1.4.10 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.11 ⌅ [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.4 ⌅ [354b36f9] StringViews v1.3.7 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [013be700] UnsafeAtomics v0.3.1 ⌅ [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.3 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.11.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: syntax: invalid assignment location "(sitp::ScaledInterpolation{T, 1}, x::Number, y::Int) where T" around /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [3] top-level scope  @ ~/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:456  [4] include(mod::Module, _path::String)  @ Base Base.jl:325  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core boot.jl:522  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [9] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [11] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"), "Interpolations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:6  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("5ab0869b-81aa-558d-bb23-cbf5423bbe9b"), "KernelDensity") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base module.jl:101  [11] top-level scope  @ ~/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:10  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"), "Interpolations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/CodonMolecularEvolution/dBmJx/src/CodonMolecularEvolution.jl:4  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/CodonMolecularEvolution/dBmJx/src/CodonMolecularEvolution.jl:1 in expression starting at stdin:5 4 dependencies had output during precompilation: ┌ Interpolations │ ERROR: LoadError: syntax: invalid assignment location "(sitp::ScaledInterpolation{T, 1}, x::Number, y::Int) where T" around /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:326 │ [3] top-level scope │ @ ~/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:456 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3296 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [9] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [11] _start() │ @ Base client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/scaling/scaling.jl:88 │ in expression starting at /home/pkgeval/.julia/packages/Interpolations/91PhN/src/Interpolations.jl:1 │ in expression starting at stdin:5 └ ┌ KernelDensity │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"), "Interpolations") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2837 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2685 │ [4] macro expansion │ @ loading.jl:2599 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2563 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base module.jl:137 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:6 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3296 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [17] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [19] _start() │ @ Base client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/KernelDensity/uVtNL/src/KernelDensity.jl:1 │ in expression starting at stdin:5 └ ┌ CodonMolecularEvolution │ [Output was shown above] └ ┌ MCMCChains │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("5ab0869b-81aa-558d-bb23-cbf5423bbe9b"), "KernelDensity") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base loading.jl:2837 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base loading.jl:2685 │ [4] macro expansion │ @ loading.jl:2599 [inlined] │ [5] macro expansion │ @ lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base loading.jl:2563 │ [7] require(into::Module, mod::Symbol) │ @ Base loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:10 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3296 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [17] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [19] _start() │ @ Base client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/MCMCChains/RIFg4/src/MCMCChains.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 4 packages failed to precompile: Interpolations Failed to precompile Interpolations [a98d9a8b-a2ab-59e6-89dd-64a1c18fca59] to "/home/pkgeval/.julia/compiled/v1.14/Interpolations/jl_6FI3yx" (ProcessExited(1)). KernelDensity Failed to precompile KernelDensity [5ab0869b-81aa-558d-bb23-cbf5423bbe9b] to "/home/pkgeval/.julia/compiled/v1.14/KernelDensity/jl_SNaKE0" (ProcessExited(1)). CodonMolecularEvolution Failed to precompile CodonMolecularEvolution [6511b2a3-0bb8-4def-a118-560a7e125e34] to "/home/pkgeval/.julia/compiled/v1.14/CodonMolecularEvolution/jl_VnGDEF" (ProcessExited(1)). MCMCChains Failed to precompile MCMCChains [c7f686f2-ff18-58e9-bc7b-31028e88f75d] to "/home/pkgeval/.julia/compiled/v1.14/MCMCChains/jl_soO7Du" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/CodonMolecularEvolution/dBmJx/test/runtests.jl:1 Testing failed after 55.79s ERROR: LoadError: Package CodonMolecularEvolution errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 655.49s: package has syntax issues