Package evaluation to test Manifolds on Julia 1.14.0-DEV.2311 (d99fded7bf*) started at 2026-06-09T19:59:39.360 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.62s ################################################################################ # Installation # Installing Manifolds... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [1cead3c2] + Manifolds v0.11.27 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2c470bb0] + Kronecker v0.5.5 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [af67fdf4] + ManifoldDiff v0.4.5 [1cead3c2] + Manifolds v0.11.27 [3362f125] + ManifoldsBase v2.4.0 [99c1a7ee] + MatrixEquations v2.5.8 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [356022a1] + NamedDims v1.2.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [94ee1d12] + Quaternions v0.7.7 [c1ae055f] + RealDot v0.1.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.6 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 [bc48ee85] + Tullio v0.3.9 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.48s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... WARNING: Method definition eigencopy_oftype(LinearAlgebra.UpperHessenberg{T, S} where S<:AbstractArray{T, 2} where T, Any) in module LinearAlgebra at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/hessenberg.jl:457 overwritten in module GenericLinearAlgebra at /home/pkgeval/.julia/packages/GenericLinearAlgebra/WvuVM/src/eigenGeneral.jl:15. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3.5 s ? GenericLinearAlgebra 27.4 s ✓ SciMLBase 8.3 s ✓ ManifoldsBase ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("14197337-ba66-59df-a3e3-ca00e7dcff7a"), "GenericLinearAlgebra") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/DoubleFloats/KuIQF/src/DoubleFloats.jl:45  [12] include(mod::Module, _path::String)  @ Base Base.jl:326  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3296  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:521  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/DoubleFloats/KuIQF/src/DoubleFloats.jl:1 in expression starting at stdin:5 ✗ DoubleFloats 30.3 s ✓ FastAlmostBandedMatrices 6.0 s ✓ MonteCarloIntegration 3.9 s ✓ NLsolve 4.6 s ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5.2 s ✓ SciMLBase → SciMLBaseStaticArraysExt 4.9 s ✓ SciMLBase → SciMLBaseForwardDiffExt  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml  CondaPkg Resolving changes  + matplotlib  + openssl  + python  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_x3pGSz/.CondaPkg ✔ Created /tmp/jl_x3pGSz/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_x3pGSz/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=3, <3.6"  │ matplotlib = ">=1"  │  │ [dependencies.python]  │ version = ">=3.10,!=3.14.0,!=3.14.1,<4"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [workspace]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi  │ install  └ --manifest-path /tmp/jl_x3pGSz/.CondaPkg/pixi.toml ✔ The default environment has been installed. 81.8 s ✓ SciMLBase → SciMLBasePythonCallExt 4.5 s ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 7.8 s ✓ SciMLBase → SciMLBaseDistributionsExt 20.5 s ✓ ManifoldsBase → ManifoldsBasePlotsExt 1.6 s ✓ ManifoldsBase → ManifoldsBaseStatisticsExt 1.5 s ✓ ManifoldsBase → ManifoldsBaseQuaternionsExt 3.1 s ✓ ManifoldsBase → ManifoldsBaseRecursiveArrayToolsExt 2.0 s ✓ ManifoldDiff 26.6 s ✓ LinearSolve 11.5 s ✓ SciMLJacobianOperators 12.1 s ✓ OptimizationBase 13.0 s ✓ Integrals 29.1 s ✓ Manifolds 12.1 s ✓ LinearSolve → LinearSolveBandedMatricesExt 6.0 s ✓ LinearSolve → LinearSolveChainRulesCoreExt 27.6 s ✓ LinearSolve → LinearSolveSparseArraysExt 10.9 s ✓ LinearSolve → LinearSolveForwardDiffExt 17.0 s ✓ LinearSolve → LinearSolveFastAlmostBandedMatricesExt 19.2 s ✓ LineSearch 26.4 s ✓ NonlinearSolveBase 6.8 s ✓ OptimizationBase → OptimizationChainRulesCoreExt 11.0 s ✓ Integrals → IntegralsForwardDiffExt 10.7 s ✓ Integrals → IntegralsDifferentiationInterfaceExt 8.6 s ✓ Manifolds → ManifoldsRecipesBaseExt 7.5 s ✓ Manifolds → ManifoldsHybridArraysExt 8.6 s ✓ Manifolds → ManifoldsNLsolveExt 11.3 s ✓ Manifolds → ManifoldsTestExt 8.1 s ✓ Manifolds → ManifoldsRecursiveArrayToolsExt 7.0 s ✓ LinearSolve → LinearSolveEnzymeExt 4.8 s ✓ LineSearch → LineSearchLineSearchesExt 6.3 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 6.0 s ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 4.7 s ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 6.2 s ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4.4 s ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 18.6 s ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 11.2 s ✓ NonlinearSolveBase → NonlinearSolveBaseBandedMatricesExt 13.7 s ✓ BracketingNonlinearSolve 9.8 s ✓ Manifolds → ManifoldsDistributionsExt 28.4 s ✓ NonlinearSolveSpectralMethods 48.6 s ✓ NonlinearSolveQuasiNewton 102.1 s ✓ NonlinearSolveFirstOrder 5.1 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 11.2 s ✓ DiffEqBase 5.7 s ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 9.5 s ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 4.9 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 26.3 s ✓ SimpleNonlinearSolve 6.2 s ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4.4 s ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 10.5 s ✓ DiffEqBase → DiffEqBaseForwardDiffExt 15.6 s ✓ DiffEqCallbacks 12.8 s ✓ OrdinaryDiffEqCore 5.8 s ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 139.8 s ✓ NonlinearSolve 29.4 s ✓ BoundaryValueDiffEqCore 6.4 s ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt 71.0 s ✓ OrdinaryDiffEqVerner 18.3 s ✓ OrdinaryDiffEqTsit5 23.4 s ✓ NonlinearSolve → NonlinearSolveNLsolveExt 27.8 s ✓ BoundaryValueDiffEqAscher 201.0 s ✓ BoundaryValueDiffEqMIRK 37.6 s ✓ BoundaryValueDiffEqMIRKN 314.0 s ✓ BoundaryValueDiffEqFIRK 14.7 s ✓ OrdinaryDiffEqDifferentiation 163.9 s ✓ BoundaryValueDiffEqShooting 42.8 s ✓ Manifolds → ManifoldsBoundaryValueDiffEqExt 8.2 s ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 85.6 s ✓ BoundaryValueDiffEq 44.1 s ✓ OrdinaryDiffEqRosenbrock 26.0 s ✓ OrdinaryDiffEqNonlinearSolve 297.5 s ✓ OrdinaryDiffEqSDIRK 57.8 s ✓ OrdinaryDiffEqBDF  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 437 running 1 of 1  signal (10): User defined signal 1 gc_mark_obj8 at /source/src/gc-stock.c:1738:13 [inlined] gc_mark_outrefs at /source/src/gc-stock.c:2509:23 [inlined] gc_mark_and_steal at /source/src/gc-stock.c:2591:9 _jl_gc_collect at /source/src/gc-stock.c:3129:13 ijl_gc_collect at /source/src/gc-stock.c:3554:23 ijl_create_system_image at /source/src/staticdata.c:3283:5 ijl_write_compiler_output at /source/src/precompile.c:140:5 ijl_atexit_hook at /source/src/init.c:280:9 jl_repl_entrypoint at /source/src/jlapi.c:1139:5 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x77ca7cb2b249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)  128.7 s ✓ OrdinaryDiffEqDefault ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 6 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4167:23 [inlined] ijl_apply_generic at /source/src/gf.c:4393:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b302254df00 Total snapshots: 317. Utilization: 0% ╎317 @Base/task.jl:1170 wait_forever() 316╎ 317 @Base/task.jl:1248 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4167:23 [inlined] ijl_apply_generic at /source/src/gf.c:4393:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007420d9b83b20 Total snapshots: 277. Utilization: 0% ╎277 @Base/task.jl:1170 wait_forever() 276╎ 277 @Base/task.jl:1248 wait() [6] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4167:23 [inlined] ijl_apply_generic at /source/src/gf.c:4393:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 24038575 (Pool: 24037687; Big: 888); GC: 32 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:56:0 (pc: 6) #schedule#625 at ./task.jl:1053:0 (pc: 71) schedule at ./task.jl:1045:0 [inlined] uv_writecb_task at ./stream.jl:1198:0 (pc: 11) jlcapi_uv_writecb_task_376.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926:0 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227:0 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420:0 ijl_process_events at /source/src/jl_uv.c:397:21 process_events at ./libuv.jl:133:0 [inlined] wait at ./task.jl:1235:0 (pc: 15) uv_write at ./stream.jl:1079:0 (pc: 11) unsafe_write at ./stream.jl:1152:0 (pc: 55) PkgEval terminated after 2732.57s: test duration exceeded the time limit