Package evaluation to test PlantGeom on Julia 1.14.0-DEV.2307 (a8f97b1944*) started at 2026-06-08T16:44:39.859 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.98s ################################################################################ # Installation # Installing PlantGeom... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5edaa67e] + PlantGeom v0.19.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [150eb455] + CoordinateTransformations v0.6.4 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.6 [8f5d6c58] + EzXML v1.2.3 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [0c81fc1b] + InputBuffers v1.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.8.0 [dd4a991b] + MultiScaleTreeGraph v0.15.4 [af6c499f] + MutableNamedTuples v0.1.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [5edaa67e] + PlantGeom v0.19.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [94ee1d12] + Quaternions v0.7.7 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [699a6c99] + SimpleTraits v0.9.6 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [fdbf4ff8] + XLSX v0.11.10 [72c71f33] + XML v0.3.8 [49080126] + ZipArchives v2.6.0 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.15.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.4 s ✓ IntegrationInterface → IntegrationInterfaceQuadGKExt 4.2 s ✓ HAdaptiveIntegration 37.8 s ✓ MathTeXEngine 68.4 s ✓ PlantSimEngine 24.9 s ✓ PlantGeom 5.6 s ✓ Colorfy → ColorfyDistributionsExt 14.9 s ✓ CoordRefSystems 28.7 s ✓ Plots → GeometryBasicsExt 3.4 s ✓ HAdaptiveIntegration → IncreasePrecisionExt 2.4 s ✓ IntegrationInterface → IntegrationInterfaceHAdaptiveIntegrationExt 547.7 s ✓ Makie 37.3 s ✓ PlantSimEngine → PlantSimEngineGraphEditorExt 48.7 s ✓ PlantGeom → PlantGeomPlantSimEngineExt 16.6 s ✓ Meshes 410.0 s ✓ CairoMakie 101.3 s ✓ PlantGeom → PlantGeomMakie 87.3 s ✓ Meshes → MeshesMakieExt 27.5 s ✓ PlantGeom → PlantGeomMeshesInterop 18 dependencies successfully precompiled in 1474 seconds. 480 already precompiled. Precompilation completed after 1498.66s ################################################################################ # Testing # Testing PlantGeom Status `/tmp/jl_BKQqGA/Project.toml` [824d6782] Bonito v4.2.0 [13f3f980] CairoMakie v0.15.11 [35d6a980] ColorSchemes v3.31.0 [5ae59095] Colors v0.13.1 [e30172f5] Documenter v1.17.0 [5c1252a2] GeometryBasics v0.5.10 [eacbb407] Meshes v0.57.14 [dd4a991b] MultiScaleTreeGraph v0.15.4 [5edaa67e] PlantGeom v0.19.2 `~/.julia/packages/PlantGeom/zG9EL/` [9a576370] PlantSimEngine v0.14.1 [91a5bcdd] Plots v1.41.6 [3cdcf5f2] RecipesBase v1.3.4 [324d217c] ReferenceTests v0.10.6 [90137ffa] StaticArrays v1.9.18 [bd369af6] Tables v1.12.1 [1986cc42] Unitful v1.28.0 [37e2e46d] LinearAlgebra v1.14.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_BKQqGA/Manifest.toml` [47edcb42] ADTypes v1.22.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.25.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.9 [18cc8868] BaseDirs v1.3.2 [9718e550] Baselet v0.1.1 [0e736298] Bessels v0.2.8 [d1d4a3ce] BitFlags v0.1.10 [824d6782] Bonito v4.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.16 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.11 [d360d2e6] ChainRulesCore v1.26.1 [7a955b69] CircularArrays v1.5.0 [da1fd8a2] CodeTracking v3.0.2 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [03fe91ce] Colorfy v1.2.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.8 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.3 [b46f11dc] CoordRefSystems v0.19.18 [150eb455] CoordinateTransformations v0.6.4 [b7a15901] CoreMath v0.1.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [244e2a9f] DefineSingletons v0.1.2 [927a84f5] DelaunayTriangulation v1.6.6 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.126 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [4e289a0a] EnumX v1.0.7 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [8f5d6c58] 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Testing Running tests... Test Summary: | Pass Total Time Read OPF | 8 8 11.9s ┌ Warning: Normalized prototype mesh to unit convention. │ ref_mesh = "leaf" │ length_axis = :x └ @ PlantGeom ~/.julia/packages/PlantGeom/zG9EL/src/reconstruction/prototypes.jl:164 Test Summary: | Pass Total Time OPF files | 75 75 1m45.0s Test Summary: | Pass Total Time OPS files | 116 116 1m14.2s Test Summary: | Pass Total Time write_opf: skips transient scene cache attributes | 5 5 0.7s Test Summary: | Pass Total Time write_ops: skips transient scene cache attributes in emitted OPF objects | 6 6 2.5s Test Summary: | Pass Total Time make_scene: configurable MTG encoding type | 3 3 15.2s Test Summary: | Pass Total Time make_scene: path adders use scene MTG encoding type | 3 3 7.1s Test Summary: | Pass Total Time make_scene: repeated objects receive unique node ids | 11 11 17.6s ┌ Warning: `scene_object_transformation(; pos=...)` is deprecated, use `scene_object_transformation(; at=...)` instead. │ caller = top-level scope at test-scene-placement.jl:125 └ @ Core ~/.julia/packages/PlantGeom/zG9EL/test/test-scene-placement.jl:125 ┌ Warning: `place_in_scene!(; pos=...)` is deprecated, use `place_in_scene!(; at=...)` instead. │ caller = top-level scope at test-scene-placement.jl:125 └ @ Core ~/.julia/packages/PlantGeom/zG9EL/test/test-scene-placement.jl:125 Test Summary: | Pass Total Time scene placement: deprecated pos keyword | 2 2 7.8s Test Summary: | Pass Total Time place_in_scene!: mixed scene round-trip through OPS | 14 14 14.9s Test Summary: | Pass Total Time Makie recipes | 55 55 5m45.5s Test Summary: | Pass Total Time Plots.jl recipes | 6 6 22.4s Test Summary: | Pass Total Time merge_children_geometry! | 23 23 8.4s Test Summary: | Pass Total Time Extrusion Mesh | 52 52 9.1s Test Summary: | Pass Total Time procedural geometry sources | 11 11 4.5s Test Summary: | Pass Total Time geometry transform replacement stays concrete | 5 5 2.0s Test Summary: | Pass Total Time point mapped geometry source | 5 5 0.3s Test Summary: | Pass Total Time rational bezier cereal leaf helpers | 10 10 0.9s Test Summary: | Pass Total Time cereal leaf point mapping responds to base angle and bend | 7 7 0.9s Test Summary: | Pass Total Time lamina twist roll map and composition | 12 12 0.9s Test Summary: | Pass Total Time point map frame applies dimensions before deformation | 6 6 1.3s Test Summary: | Pass Total Time biomechanical bending transformation | 7 7 3.0s Test Summary: | Pass Total Time biomechanical segment-chain bending | 6 6 4.2s Test Summary: | Pass Total Time manual transform helpers | 11 11 1.5s Test Summary: | Pass Total Time procedural geometry visual regression | 4 4 1m12.7s Test Summary: | Pass Total Time Growth API (structure-only) | 26 26 1.1s Test Summary: | Pass Total Time Growth API geometry rebuild + prototype_selector | 6 6 6.4s ┌ Warning: Normalized prototype mesh to unit convention. │ ref_mesh = "base_ref" │ length_axis = :x └ @ PlantGeom ~/.julia/packages/PlantGeom/zG9EL/src/reconstruction/prototypes.jl:164 ┌ Warning: Normalized prototype mesh to unit convention. │ ref_mesh = "base_ref" │ length_axis = :x └ @ PlantGeom ~/.julia/packages/PlantGeom/zG9EL/src/reconstruction/prototypes.jl:164 Test Summary: | Pass Total Time Prototype API basics | 7 7 3.8s Test Summary: | Pass Total Time RawMeshPrototype ignores size scaling | 2 2 2.3s Test Summary: | Pass Total Time Prototype selector resolution | 1 1 4.0s Test Summary: | Pass Total Time Growth API writes prototype attrs | 2 2 0.6s Test Summary: | Pass Total Time geometry conventions | 12 12 3.3s Test Summary: | Pass Total Time topology reconstruction | 24 24 1m19.5s Test Summary: | Pass Total Time amap reconstruction core | 78 78 12.4s Test Summary: | Pass Total Time amap visual regression | 5 5 20.8s ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{Symbol, Tuple}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::ModelMapping{PlantSimEngine.MultiScale, Dict{Symbol, Tuple}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 70 running 1 of 1 signal (10): User defined signal 1 _ZL15simplifyAddInstPN4llvm5ValueES1_bbRKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZL31simplifyInstructionWithOperandsPN4llvm11InstructionENS_8ArrayRefIPNS_5ValueEEERKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19simplifyInstructionEPNS_11InstructionERKNS_13SimplifyQueryE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/src/pipeline.cpp:982:12 operator() at /source/src/jitlayers.cpp:1298:17 operator() at /source/src/jitlayers.cpp:1435:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2382:18 materialize at /source/src/jitlayers.cpp:905:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2085:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3677:27 _jl_invoke at /source/src/gf.c:4130:16 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 #init_node_status!#235 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:168:0 (pc: 1256) init_node_status! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:94:0 [inlined] #233 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:49:0 [inlined] traverse_no_filter! at /home/pkgeval/.julia/packages/MultiScaleTreeGraph/SZPTq/src/compute_MTG/traverse.jl:60:0 (pc: 231) #traverse!#73 at /home/pkgeval/.julia/packages/MultiScaleTreeGraph/SZPTq/src/compute_MTG/traverse.jl:130:0 (pc: 97) traverse! at /home/pkgeval/.julia/packages/MultiScaleTreeGraph/SZPTq/src/compute_MTG/traverse.jl:106:0 [inlined] #traverse!#81 at /home/pkgeval/.julia/packages/MultiScaleTreeGraph/SZPTq/src/compute_MTG/traverse.jl:246:0 [inlined] traverse! at /home/pkgeval/.julia/packages/MultiScaleTreeGraph/SZPTq/src/compute_MTG/traverse.jl:235:0 [inlined] #init_statuses#219 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:48:0 (pc: 17) init_statuses at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:24:0 (pc: 9) unknown function (ip: 0x7a0ab3cd4ec3) at (unknown file) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 #init_simulation#237 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:341:0 (pc: 65) init_simulation at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:311:0 [inlined] #GraphSimulation#175 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/GraphSimulation.jl:39:0 [inlined] GraphSimulation at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/GraphSimulation.jl:37:0 (pc: 15) unknown function (ip: 0x7a0ab3cb82a7) at (unknown file) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_body at /source/src/interpreter.c:594:35 eval_body at /source/src/interpreter.c:563:21 eval_body at /source/src/interpreter.c:571:21 eval_body at /source/src/interpreter.c:571:21 eval_body at /source/src/interpreter.c:571:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:327:0 (pc: 1) IncludeInto at ./Base.jl:328:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:327:0 (pc: 1) IncludeInto at ./Base.jl:328:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 425) _start at ./client.jl:596:0 (pc: 294) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7a0acf473249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Test Summary: | Pass ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a526ae046a0 Total snapshots: 471. Utilization: 0% ╎471 @Base/task.jl:1170 wait_forever() 470╎ 471 @Base/task.jl:1248 wait() Total Time┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a0ab4ffc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:596 _start() ╎ 1 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:521 eval(m::Module, e::Any) ╎ 1 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ 1 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::Strin… ╎ 1 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _path:… ╎ ╎ 1 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity), mod:… ╎ ╎ 1 @Base/boot.jl:521 eval(m::Module, e::Any) ╎ ╎ 1 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ ╎ 1 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::… ╎ ╎ 1 @Base/loading.jl:3192 _include(mapexpr::Function, mod::Module, _… ╎ ╎ ╎ 1 @Base/loading.jl:3132 include_string(mapexpr::typeof(identity),… ╎ ╎ ╎ 1 @Base/boot.jl:521 eval(m::Module, e::Any) ╎ ╎ ╎ 1 @PlantSimEngine/….jl:37 kwcall(::@NamedTuple{nsteps::Int64, o… ╎ ╎ ╎ 1 @PlantSimEngine/….jl:39 PlantSimEngine.GraphSimulation(graph… ╎ ╎ ╎ 1 @PlantSimEngine/…jl:311 kwcall(::@NamedTuple{nsteps::Int64,… ╎ ╎ ╎ ╎ 1 @PlantSimEngine/…l:351 init_simulation(mtg::Node{NodeMTG, … Growth API PlantSimEngine extension | 14 14 1m19.4s [70] signal 15: Terminated in expression starting at none:1 _ZN4llvm8CallBase7arg_endEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZNK4llvm8CallBase12paramHasAttrEjNS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm18TargetLoweringBase12ArgListEntry13setAttributesEPKNS_8CallBaseEj at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19SelectionDAGBuilder11LowerCallToERKNS_8CallBaseENS_7SDValueEbbPKNS_10BasicBlockEPKNS_14TargetLowering11PtrAuthInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19SelectionDAGBuilder9visitCallERKNS_8CallInstE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19SelectionDAGBuilder5visitERKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel16SelectBasicBlockENS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb1EEES7_Rb at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm22SelectionDAGISelLegacy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1414:23 compileModule at /source/src/jitlayers.cpp:2390:79 materialize at /source/src/jitlayers.cpp:906:36 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2085:14 jl_generate_fptr_for_unspecialized_impl at /source/src/jitlayers.cpp:561:43 jl_compile_method_internal at /source/src/gf.c:3701:13 _jl_invoke at /source/src/gf.c:4130:16 [inlined] ijl_invoke at /source/src/gf.c:4145:12 jl_invoke_julia_macro at /source/src/ast.c:1067:18 jl_expand_macros at /source/src/ast.c:1129:30 jl_expand_macros at /source/src/ast.c:1178:26 jl_fl_lower at /source/src/ast.c:1207:12 fl_lower at ./flfrontend.jl:24:0 (pc: 17) jfptr_fl_lower_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] ijl_lower at /source/src/ast.c:1274:26 jl_toplevel_eval_flex at /source/src/toplevel.c:660:37 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:327:0 (pc: 1) IncludeInto at ./Base.jl:328:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 207) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:327:0 (pc: 1) IncludeInto at ./Base.jl:328:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:521:0 (pc: 1) exec_options at ./client.jl:321:0 (pc: 425) _start at ./client.jl:596:0 (pc: 294) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4138:23 [inlined] ijl_apply_generic at /source/src/gf.c:4364:12 jl_apply at /source/src/julia.h:2388:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7a0acf473249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 413818637 (Pool: 413816106; Big: 2531); GC: 196 PkgEval terminated after 2728.44s: test duration exceeded the time limit