Package evaluation to test AIBECS on Julia 1.14.0-DEV.2307 (a8f97b1944*) started at 2026-06-08T20:41:02.664 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.22s ################################################################################ # Installation # Installing AIBECS... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [ace601d6] + AIBECS v0.20.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [ace601d6] + AIBECS v0.20.2 [14f7f29c] + AMD v0.5.3 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.0 [4fba245c] + ArrayInterface v7.25.0 [13072b0f] + AxisAlgorithms v1.1.0 [d1d4a3ce] + BitFlags v0.1.10 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.4 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [124859b0] + DataDeps v0.7.14 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.20 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [9aa1b823] + FastClosures v0.3.2 [bf96fef3] + FieldMetadata v0.3.1 [4c728ea3] + Flatten v0.4.3 [f6369f11] + ForwardDiff v1.4.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.9.1 [46192b85] + GPUArraysCore v0.2.0 ⌅ [cd3eb016] + HTTP v1.11.0 [a3d749fb] + Inpaintings v0.3.1 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ba0b0d4f] + Krylov v0.10.6 [7ed4a6bd] + LinearSolve v3.85.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [6ac74813] + MD5 v0.2.3 [1914dd2f] + MacroTools v0.5.16 [7eb4fadd] + Match v2.4.1 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.10 [49441bc9] + MetadataArrays v0.1.1 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.27 [be0214bd] + NonlinearSolveBase v2.30.3 [cfe838f4] + OceanGrids v0.4.7 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [0c0d3e7f] + PureKLU v1.0.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 [0bca4576] + SciMLBase v3.18.0 [19f34311] + SciMLJacobianOperators v0.1.13 [a6db7da4] + SciMLLogging v2.0.0 [c0aeaf25] + SciMLOperators v1.22.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [a57abbd0] + SparseColumnPivotedQR v2.1.1 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2efcf032] + SymbolicIndexingInterface v0.3.48 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [efce3f68] + WoodburyMatrices v1.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 9.4 s ✓ OceanGrids 24.1 s ✓ AIBECS 49.7 s ✓ WorldOceanAtlasTools 20.1 s ✓ AIBECS → AIBECSBijectorsExt 23.6 s ✓ AIBECS → AIBECSNCDatasetsExt 26.3 s ✓ AIBECS → AIBECSDataFramesExt 18.3 s ✓ AIBECS → AIBECSRecipesParametersExt 16.8 s ✓ AIBECS → AIBECSRecipesBaseExt 31.4 s ✓ AIBECS → AIBECSNonlinearSolveExt 23.6 s ✓ AIBECS → AIBECSJLD2Ext 18.3 s ✓ AIBECS → AIBECSDistributionsExt 24.3 s ✓ AIBECS → AIBECSETOPOExt 24.1 s ✓ AIBECS → AIBECSOCIM2_48LExt 26.3 s ✓ AIBECS → AIBECSShapefileExt 14 dependencies successfully precompiled in 370 seconds. 474 already precompiled. Precompilation completed after 379.61s ################################################################################ # Testing # Testing AIBECS Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_VBB2pb/Project.toml` [ace601d6] + AIBECS v0.20.2 [76274a88] + Bijectors v0.16.0 [a93c6f00] + DataFrames v1.8.2 [31c24e10] + Distributions v0.25.126 [fa6b7ba4] + DualNumbers v0.6.9 [6a86dc24] + FiniteDiff v2.31.0 [033835bb] + JLD2 v0.6.4 [23992714] + MAT v0.12.0 [85f8d34a] + NCDatasets v0.14.15 [8913a72c] + NonlinearSolve v4.19.1 [91a5bcdd] + Plots v1.41.6 [8e980c4a] + Shapefile v0.13.3 [9f842d2f] + SparseConnectivityTracer v1.2.1 [0a514795] + SparseMatrixColorings v0.4.27 [04f20302] + WorldOceanAtlasTools v0.6.4 Updating `/tmp/jl_VBB2pb/Manifest.toml` [ace601d6] + AIBECS v0.20.2 [80f14c24] + AbstractMCMC v5.15.1 [7a57a42e] + AbstractPPL v0.15.2 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.9 [76274a88] + Bijectors v0.16.0 [70df07ce] + BracketingNonlinearSolve v1.12.1 [179af706] + CFTime v0.2.10 [49dc2e85] + Calculus v0.5.2 [9e997f8a] + ChangesOfVariables v0.1.10 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.4.3 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [75c7ada1] + DBFTables v1.2.7 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] + DensityInterface v0.4.0 [3c3547ce] + DiskArrays v0.4.21 [31c24e10] + Distributions v0.25.126 [fa6b7ba4] + DualNumbers v0.6.9 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.19.0 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [d9f16b24] + Functors v0.5.2 [28b8d3ca] + GR v0.73.26 [68eda718] + GeoFormatTypes v0.4.5 [cf35fbd7] + GeoInterface v1.6.1 [42e2da0e] + Grisu v1.0.2 [f67ccb44] + HDF5 v0.17.3 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [033835bb] + JLD2 v0.6.4 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v1.6.1 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 ⌅ [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [87fe0de2] + LineSearch v0.1.9 [6fdf6af0] + LogDensityProblems v2.2.0 ⌅ [2ab3a3ac] ↓ LogExpFunctions v1.0.1 ⇒ v0.3.29 [23992714] + MAT v0.12.0 [3da0fdf6] + MPIPreferences v0.1.12 [dbb5928d] + MappedArrays v0.4.3 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.15 [8913a72c] + NonlinearSolve v4.19.1 [5959db7a] + NonlinearSolveFirstOrder v2.1.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.13.1 [26075421] + NonlinearSolveSpectralMethods v1.7.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.5 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.6 [2dfb63ee] + PooledArrays v1.4.3 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [01d81517] + RecipesPipeline v0.6.12 [05181044] + RelocatableFolders v1.0.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [7e506255] + ScopedValues v1.6.2 [91c51154] + SentinelArrays v1.4.10 [8e980c4a] + Shapefile v0.13.3 [992d4aef] + Showoff v1.0.3 [727e6d20] + SimpleNonlinearSolve v2.12.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.2.1 [0a514795] + SparseMatrixColorings v0.4.27 [860ef19b] + StableRNGs v1.0.4 [2913bbd2] + StatsBase v0.34.11 [4c63d2b9] + StatsFuns v2.0.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [5d786b92] + 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[3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_VBB2pb/Project.toml` [47edcb42] ADTypes v1.22.0 [ace601d6] AIBECS v0.20.2 [76274a88] Bijectors v0.16.0 [124859b0] DataDeps v0.7.14 [a93c6f00] DataFrames v1.8.2 [a0c0ee7d] DifferentiationInterface v0.7.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.126 [fa6b7ba4] DualNumbers v0.6.9 [bf96fef3] FieldMetadata v0.3.1 [6a86dc24] FiniteDiff v2.31.0 [4c728ea3] Flatten v0.4.3 [f6369f11] ForwardDiff v1.4.0 [a98d9a8b] Interpolations v0.16.2 [033835bb] JLD2 v0.6.4 [7ed4a6bd] LinearSolve v3.85.0 [23992714] MAT v0.12.0 [6ac74813] MD5 v0.2.3 [49441bc9] MetadataArrays v0.1.1 [85f8d34a] NCDatasets v0.14.15 [8913a72c] NonlinearSolve v4.19.1 [be0214bd] NonlinearSolveBase v2.30.3 [cfe838f4] OceanGrids v0.4.7 [91a5bcdd] Plots v1.41.6 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [0bca4576] SciMLBase v3.18.0 [8e980c4a] Shapefile v0.13.3 [9f842d2f] SparseConnectivityTracer v1.2.1 [0a514795] 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available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCIM2_48L 7-Zip (a) 26.00 (x64) : Copyright (c) 1999-2026 Igor Pavlov : 2026-02-12 64-bit locale=C.UTF-8 Threads:128 OPEN_MAX:1024, ASM Extracting archive: -- Path = Type = tar Code Page = UTF-8 Characteristics = ASCII Everything is Ok Files: 6 Size: 1142803650 Compressed: 7168 ┌ Info: You are about to use the OCIM2_48L model. │ If you use it for research, please cite: │ │ - Holzer, M., DeVries, T. & de Lavergne, C. Diffusion controls the ventilation of a Pacific Shadow Zone above abyssal overturning. Nat Commun 12, 4348 (2021). https://doi.org/10.1038/s41467-021-24648-x │ - DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle-3He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Holzer_2019" and "Holzer_etal_2021" keys.) Divergence timescale: 21.61215986517385 Myr Mass conservation timescale: 7.675266273608991e6 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCIM2_48L Test Summary: | Pass Total Time test setup.jl only | 25 25 2m49.2s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCIM2 ┌ Info: You are about to use the OCIM2_CTL_He model. │ If you use it for research, please cite: │ │ DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle‐³He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716" │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Holzer_2019" key.) Divergence timescale: 56.82128130650262 Myr Mass conservation timescale: 1.6417563680710558e7 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCIM2 Test Summary: | Pass Total Time test setup.jl only | 25 25 1m30.6s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCIM1 ┌ Info: You are about to use the OCIM1_CTL model. │ If you use it for research, please cite: │ │ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739. │ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.) Divergence timescale: 56.88633505066291 Myr Mass conservation timescale: 1.6399762430792455e7 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCIM1 Test Summary: | Pass Total Time test setup.jl only | 25 25 4.5s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCIM0 ┌ Info: You are about to use the OCIM0.1 model. │ If you use it for research, please cite: │ │ - - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181. │ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.) Divergence timescale: 4918.412202633426 Myr Mass conservation timescale: 1.3107440710695875e9 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCIM0 Test Summary: | Pass Total Time test setup.jl only | 25 25 3.9s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCCA ┌ Info: You are about to use the OCCA model. │ If you use it for research, please cite: │ │ - Forget, G., 2010: Mapping Ocean Observations in a Dynamical Framework: A 2004–06 Ocean Atlas. J. Phys. Oceanogr., 40, 1201–1221, https://doi.org/10.1175/2009JPO4043.1 │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Forget_2010" key.) ┌ Warning: Enforcing mass conservation: modifying OCCA transport matrix as T -= Diagonal((Tᵀ v) ./ v). Pass `conservemass = false` to skip. └ @ AIBECSJLD2Ext ~/.julia/packages/AIBECS/AOB9l/ext/AIBECSJLD2Ext.jl:87 Divergence timescale: 0.005349104396213813 Myr Mass conservation timescale: 4.67378112665377e8 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCCA Test Summary: | Pass Broken Total Time test setup.jl only | 24 1 25 5.1s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCCA ┌ Warning: Over-writing registration of the datadep │ name = "AIBECS-OCCA" └ @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/registration.jl:15 ┌ Info: You are about to use the OCCA model. │ If you use it for research, please cite: │ │ - Forget, G., 2010: Mapping Ocean Observations in a Dynamical Framework: A 2004–06 Ocean Atlas. J. Phys. Oceanogr., 40, 1201–1221, https://doi.org/10.1175/2009JPO4043.1 │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Forget_2010" key.) ┌ Warning: Enforcing mass conservation: modifying OCCA transport matrix as T -= Diagonal((Tᵀ v) ./ v). Pass `conservemass = false` to skip. └ @ AIBECSJLD2Ext ~/.julia/packages/AIBECS/AOB9l/ext/AIBECSJLD2Ext.jl:87 Divergence timescale: 0.005349104396213813 Myr Mass conservation timescale: 4.67378112665377e8 Myr ┌ Info: Running test/sparse_jacobian.jl — bespoke vs DI+SCT Jacobian └ Circulation = AIBECS.OCCA Test Summary: | Pass Broken Total Time Sparse Jacobian (OCCA) | 30 1 31 2m25.0s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.OCIM2 ┌ Warning: Over-writing registration of the datadep │ name = "AIBECS-OCIM2_CTL_He" └ @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/registration.jl:15 ┌ Info: You are about to use the OCIM2_CTL_He model. │ If you use it for research, please cite: │ │ DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle‐³He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716" │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Holzer_2019" key.) Divergence timescale: 56.82128130650262 Myr Mass conservation timescale: 1.6417563680710558e7 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.OCIM2 ┌ Info: Running test/plots.jl — plot recipes └ Circulation = AIBECS.OCIM2 ┌ Info: Running test/sources.jl — aeolian sources └ Circulation = AIBECS.OCIM2 ┌ Info: You are about to use the Chien et al. (2016) data for aeolian deposition. │ If you use it for research, please cite: │ │ - Chien, C.-T., K. R. M. Mackey, S. Dutkiewicz, N. M. Mahowald, J. M. Prospero, and A. Paytan (2016), Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados, Global Biogeochem. Cycles, 30, doi:10.1002/2015GB005334. │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the Chien_etal_2016 key.) ┌ Info: You are about to use the Dai and Trenberth river discharge dataset. │ If you use it for research, please cite: │ │ - For the dataset itself: Dai, A. 2017. Dai and Trenberth Global River Flow and Continental Discharge Dataset. Research Data Archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory. https://doi.org/10.5065/D6V69H1T. │ - For the formal publication that describe the dataset: Dai, A., and K. E. Trenberth, 2002: Estimates of freshwater discharge from continents: Latitudinal and seasonal variations. J. Hydrometeorol., 3, 660–687. │ - For descriptions of updates to the dataset: │ - Dai, A., T. Qian, K. E. Trenberth, and J. D Milliman, 2009: Changes in continental freshwater discharge from 1948-2004. J. Climate, 22, 2773–2791. │ - Dai, A., 2016: Historical and future changes in streamflow and continental runoff: A review, in Terrestrial Water Cycle and Climate Change: Natural and Human-Induced Impacts, Geophysical Monograph 221. Ed. Qiuhong Tang and Taikan Oki, AGU, John Wiley & Sons, 17–37 (DOI: 10.1002/9781118971772). │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Dai_2017", "Dai_Trenberth_2002", "Dai_etal_2009", and "Dai_2016" keys.) 7-Zip (a) 26.00 (x64) : Copyright (c) 1999-2026 Igor Pavlov : 2026-02-12 64-bit locale=C.UTF-8 Threads:128 OPEN_MAX:1024, ASM Scanning the drive for archives: 1 file, 31784239 bytes (31 MiB) Extracting archive: /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/groundwater_discharge/41467_2020_15064_MOESM8_ESM.zip -- Path = /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/groundwater_discharge/41467_2020_15064_MOESM8_ESM.zip Type = zip Physical Size = 31784239 Everything is Ok Folders: 1 Files: 5 Size: 137157916 Compressed: 31784239 ┌ Info: You are about to use the groundwater discharge data set. │ If you use it for research, please cite: │ │ - Luijendijk, E., Gleeson, T. & Moosdorf, N. Fresh groundwater discharge insignificant for the world's oceans but important for coastal ecosystems. Nat Commun 11, 1260 (2020). doi:10.1038/s41467-020-15064-8 │ - Luijendijk, Elco; Gleeson, Tom; Moosdorf, Nils (2019): Geospatial data and model results for a global model study of coastal groundwater discharge. PANGAEA, doi:10.1594/PANGAEA.907641 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Luijendijk_etal_2019" and "Luijendijk_etal_2020" keys.) Test Summary: | Pass Total Time Test setup, plots, and sources | 87 87 2m36.0s [ Info: Running test/parameters.jl — parameters API WARNING: Method definition gradlogpdf(Distributions.Uniform{T} where T<:Real, T) where {T<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/nfRUl/src/univariate/continuous/uniform.jl:86 overwritten in module Main at /home/pkgeval/.julia/packages/AIBECS/AOB9l/test/parameters.jl:40. TestParameters{Float64} xgeo = 2.17 (mmol m^-3) τgeo = 1.0 (Myr) k = 10.0 (μmol m^-3) w₀ = 1.0 (m d^-1) w′ = 0.22 (d^-1) τDOP = 0.25 (yr) τPOP = 5.25 (d) σ = 0.3333333333333333 () τDIP = 30.0 (d) TestParameters{Dual128} xgeo = 2.17 + 1.0ɛ (mmol m^-3) τgeo = 1.0 + 0.0ɛ (Myr) k = 10.0 + 1.0ɛ (μmol m^-3) w₀ = 1.0 + 1.0ɛ (m d^-1) w′ = 0.22 + 1.0ɛ (d^-1) τDOP = 0.25 + 1.0ɛ (yr) τPOP = 5.25 + 1.0ɛ (d) σ = 0.3333333333333333 + 1.0ɛ () τDIP = 30.0 + 1.0ɛ (d) \begin{tabular}{r|ccccccc} & Symbol & Value & Initial value & Unit & Prior & Description & Optimizable\\ \hline & Symbol & Float64 & Float64 & FreeUnit… & Union… & String & Bool\\ \hline 1 & xgeo & 2.17 & 2.17 & mmol m\^-3 & LogNormal\{Float64\}(μ=0.774727, σ=1.0) & Geological mean P concentration & 1 \\ 2 & τgeo & 1.0 & 1.0 & Myr & & Geological restoring timescale & 0 \\ 3 & k & 10.0 & 10.0 & μmol m\^-3 & LogNormal\{Float64\}(μ=2.30259, σ=1.0) & Half-saturation constant (Michaelis-Menten) & 1 \\ 4 & w₀ & 1.0 & 1.0 & m d\^-1 & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Sinking velocity at surface & 1 \\ 5 & w′ & 0.22 & 0.22 & d\^-1 & Normal\{Float64\}(μ=0.22, σ=10.0) & Vertical gradient of sinking velocity & 1 \\ 6 & τDOP & 0.25 & 0.25 & yr & LogNormal\{Float64\}(μ=-1.38629, σ=1.0) & Remineralization timescale (DOP to DIP) & 1 \\ 7 & τPOP & 5.25 & 5.25 & d & LogNormal\{Float64\}(μ=1.65823, σ=1.0) & Dissolution timescale (POP to DOP) & 1 \\ 8 & σ & 0.333333 & 0.333333 & & LocationScale\{Int64, Continuous, LogitNormal\{Float64\}\}(\textbackslash{}nμ: 0\textbackslash{}nσ: 1\textbackslash{}nρ: LogitNormal\{Float64\}(μ=0.0, σ=1.0)\textbackslash{}n)\textbackslash{}n & Fraction of quick local uptake recycling & 1 \\ 9 & τDIP & 30.0 & 30.0 & d & LogNormal\{Float64\}(μ=3.4012, σ=1.0) & Uptake maximum timescale (DIP to POP) & 1 \\ \end{tabular} 14 Test Summary: | Pass Total Time Parameters | 55 55 30.2s Creating François Primeau's 2x2x2 model ✔ ┌ Warning: AIBECS's `solve(::SteadyStateProblem{…,Dual,…}, ::CTKAlg)` IFT dispatch is exercising NonlinearSolveBase internals (`nodual_value`, `nonlinearsolve_∂f_∂p`, `nonlinearsolve_dual_solution`). They are declared public but are not on a stable SciML-wide API contract; a breaking change upstream would break this dispatch. For production-scale Hessians prefer `F1Method`. └ @ AIBECS ~/.julia/packages/AIBECS/AOB9l/src/overload_solve.jl:244 Test Summary: | Pass Total Time AD through solve (IFT) | 9 9 3m36.7s ┌ Info: Running test/setup.jl — circulation, grid, transport matrix └ Circulation = AIBECS.Primeau_2x2x2 Creating François Primeau's 2x2x2 model ✔ Divergence timescale: 2.2842804373910645e11 Myr Mass conservation timescale: 1.3724303621028665e12 Myr ┌ Info: Running test/particles.jl — particle transport operators └ Circulation = AIBECS.Primeau_2x2x2 ┌ Info: Running test/bgc_functions.jl — BGC functions └ Circulation = AIBECS.Primeau_2x2x2 ┌ Info: Running test/gridtools.jl — grid tools └ Circulation = AIBECS.Primeau_2x2x2 ┌ Info: Running test/cost_functions.jl — cost functions └ Circulation = AIBECS.Primeau_2x2x2 Registering World Ocean Atlas data with DataDeps ┌ Warning: You are about to use World Ocean Atlas data 18. │ │ Please cite the following corresponding reference(s): │ Garcia et al. (2018), World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.) └ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:223 Primeau_2x2x2: Error During Test at /home/pkgeval/.julia/packages/AIBECS/AOB9l/test/runtests.jl:76 Got exception outside of a @test LoadError: RequestError: Operation too slow. Less than 1 bytes/sec transferred the last 20 seconds while requesting https://www.ncei.noaa.gov/data/oceans/woa/WOA18/DATA/phosphate/netcdf/all/1.00/woa18_all_p00_01.nc Stacktrace: [1] (::Downloads.var"#23#24"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader})(easy::Downloads.Curl.Easy) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:484 [2] with_handle(f::Downloads.var"#23#24"{IOStream, Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader}, handle::Downloads.Curl.Easy) @ Downloads.Curl /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Curl/Curl.jl:105 [3] (::Downloads.var"#21#22"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader})(output::IOStream) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:395 [inlined] [4] arg_write(f::Downloads.var"#21#22"{Base.DevNull, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader}, arg::IOStream) @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:134 [5] (::Downloads.var"#19#20"{IOStream, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader})(input::Base.DevNull) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:394 [inlined] [6] arg_read(f::Downloads.var"#19#20"{IOStream, Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Bool, Nothing, String, Base.RefValue{Union{Downloads.RequestError, Downloads.Response}}, Int64, Bool, Bool, Downloads.Downloader}, arg::Base.DevNull) @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:76 [inlined] [7] request(url::String; input::Nothing, output::IOStream, method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, throw::Bool, downloader::Nothing, interrupt::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:393 [8] (::Downloads.var"#7#8"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String, Base.RefValue{Downloads.Response}})(output::IOStream) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:273 [inlined] [9] open(f::Downloads.var"#7#8"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String, Base.RefValue{Downloads.Response}}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base io.jl:438 [10] open_nolock(::Function, ::Vararg{Any}; kws::@Kwargs{write::Bool}) @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:35 [11] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.14/ArgTools/src/ArgTools.jl:103 [12] download(url::String, output::String; method::Nothing, headers::Vector{Pair{String, String}}, timeout::Float64, progress::Nothing, verbose::Bool, debug::Nothing, downloader::Nothing) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:272 [inlined] [13] download(url::String, output::String) @ Downloads /opt/julia/share/julia/stdlib/v1.14/Downloads/src/Downloads.jl:252 [inlined] [14] fallback_download(remotepath::String, localdir::String) @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/names.jl:10 [15] run_fetch(fetch_method::typeof(WorldOceanAtlasTools.fallback_download), remotepath::String, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution_automatic.jl:99 [16] download(datadep::DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution_automatic.jl:78 [17] download(datadep::DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution_automatic.jl:63 [18] handle_missing(datadep::DataDep, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution_automatic.jl:10 [inlined] [19] _resolve(datadep::DataDep, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution.jl:86 [inlined] [20] resolve(datadep::DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution.jl:29 [21] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution.jl:57 [22] resolve(namepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/xJDIR/src/resolution.jl:76 [inlined] [23] WOAfile(tracer::String; product_year::Int64, period::Int64, resolution::Int64) @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:229 [24] WOA_Dataset(tracer::String; product_year::Int64, period::Int64, resolution::Int64) @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:235 [inlined] [25] fit_to_grid(grid::OceanRectilinearGrid, tracer::String; product_year::Int64, period::Int64, resolution::Int64, field::String) @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:152 [26] fit_to_grid(grid::OceanRectilinearGrid, tracer::String) @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:151 [27] top-level scope @ ~/.julia/packages/AIBECS/AOB9l/test/cost_functions.jl:6 [28] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [29] macro expansion @ ~/.julia/packages/AIBECS/AOB9l/test/runtests.jl:82 [inlined] [30] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [31] macro expansion @ ~/.julia/packages/AIBECS/AOB9l/test/runtests.jl:77 [inlined] [32] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2327 [inlined] [33] top-level scope @ ~/.julia/packages/AIBECS/AOB9l/test/runtests.jl:2351 [34] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:327 [35] top-level scope @ none:6 [36] eval(m::Module, e::Any) @ Core boot.jl:521 [37] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [38] _start() @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/AIBECS/AOB9l/test/cost_functions.jl:6 Test Summary: | Pass Error Total Time test everything | 41 1 42 1m33.6s Primeau_2x2x2 | 41 1 42 1m33.6s Circulation and grid | 6 6 0.0s Constants, vectors, and matrices types | 13 13 0.0s Particles | 6 6 0.5s Biogeochemical functions | 6 6 27.2s Linear/nonlinear split functions | 4 4 32.5s GridTools | 6 6 1.3s RNG of the outermost testset: Random.Xoshiro(0x20279159e5e60106, 0x8164c7595cf21b20, 0xa9615419783b9c07, 0x652d533512ae0c70, 0xb779d258d8a8b599) ERROR: LoadError: Some tests did not pass: 41 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AIBECS/AOB9l/test/runtests.jl:75 Testing failed after 1037.41s ERROR: LoadError: Package AIBECS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:326 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1508.8s: package tests unexpectedly errored