Package evaluation to test PlantBiophysics on Julia 1.14.0-DEV.2291 (26145852c4*) started at 2026-06-05T01:48:36.671 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.64s ################################################################################ # Installation # Installing PlantBiophysics... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7ae8fcfa] + PlantBiophysics v0.17.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.25.0 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.10 [336ed68f] + CSV v0.10.16 [da1fd8a2] + CodeTracking v3.0.2 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [31c24e10] + Distributions v0.25.126 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f6369f11] + ForwardDiff v1.3.3 [86223c79] + Graphs v1.14.0 ⌅ [cd3eb016] + HTTP v1.11.0 ⌅ [eafb193a] + Highlights v0.5.3 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [0c81fc1b] + InputBuffers v1.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [2fda8390] + LsqFit v0.16.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [fa8bd995] + MetaGraphsNext v0.8.0 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.15.4 [af6c499f] + MutableNamedTuples v0.1.3 [1c23619d] + MyterialColors v0.3.0 [d41bc354] + NLSolversBase v8.0.0 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 ⌅ [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [7ae8fcfa] + PlantBiophysics v0.17.0 [4630fe09] + PlantMeteo v0.8.4 [9a576370] + PlantSimEngine v0.14.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 [4c63d2b9] + StatsFuns v2.0.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [22787eb5] + Term v2.0.8 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [fdbf4ff8] + XLSX v0.11.10 [72c71f33] + XML v0.3.8 [ddb6d928] + YAML v0.4.16 [49080126] + ZipArchives v2.6.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.02s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 12.5 s ✓ MonteCarloMeasurements 6.1 s ✓ LsqFit 102.5 s ✓ PlantGeom → PlantGeomMakie 8.8 s ✓ MonteCarloMeasurements → RecipesBaseExt 10.4 s ✓ MonteCarloMeasurements → ForwardDiffExt 10.3 s ✓ MonteCarloMeasurements → UnitfulExt 88.1 s ✓ MonteCarloMeasurements → MakieExt 52.5 s ✓ PlantBiophysics 8 dependencies successfully precompiled in 298 seconds. 480 already precompiled. Precompilation completed after 328.37s ################################################################################ # Testing # Testing PlantBiophysics Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_XEjvhm/Project.toml` [4c88cf16] + Aqua v0.8.15 [13f3f980] + CairoMakie v0.15.11 [e30172f5] + Documenter v1.17.0 [0987c9cc] + MonteCarloMeasurements v1.5.2 [7ae8fcfa] ~ PlantBiophysics v0.17.0 `..` ⇒ v0.17.0 [5edaa67e] + PlantGeom v0.19.2 [91a5bcdd] + Plots v1.41.6 Updating `/tmp/jl_XEjvhm/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [35492f91] + AdaptivePredicates v1.2.0 [27a7e980] + Animations v0.4.2 [4c88cf16] + Aqua v0.8.15 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.11 [d360d2e6] + ChainRulesCore v1.26.1 [6b39b394] + CodecZstd v0.8.7 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [c3611d14] + ColorVectorSpace v0.11.0 [f70d9fcc] + 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+ ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.9 [8197267c] + IntervalSets v0.7.14 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [1019f520] + JLFzf v0.1.11 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.12 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [8cdb02fc] + LazyModules v0.3.1 [ee78f7c6] + Makie v0.24.11 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.3 [d0879d2d] + MarkdownAST v0.1.3 [0a4f8689] + MathTeXEngine v0.6.9 [442fdcdd] + Measures v0.3.3 [0987c9cc] + MonteCarloMeasurements v1.5.2 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [f57f5aa1] + PNGFiles v0.4.5 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [eebad327] + PkgVersion v0.3.3 [7ae8fcfa] ~ PlantBiophysics v0.17.0 `..` ⇒ v0.17.0 [5edaa67e] + PlantGeom v0.19.2 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.6 [647866c9] + PolygonOps v0.1.2 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [4b34888f] + QOI v1.0.2 [94ee1d12] + Quaternions v0.7.7 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [01d81517] + RecipesPipeline v0.6.12 [2792f1a3] + RegistryInstances v0.1.0 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.1 [45858cf5] + Sixel v0.1.5 [860ef19b] + StableRNGs v1.0.4 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[a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_XEjvhm/Project.toml` [4c88cf16] Aqua v0.8.15 [336ed68f] CSV v0.10.16 [13f3f980] CairoMakie v0.15.11 [a93c6f00] DataFrames v1.8.2 [e30172f5] Documenter v1.17.0 [0987c9cc] MonteCarloMeasurements v1.5.2 [dd4a991b] MultiScaleTreeGraph v0.15.4 ⌅ [bac558e1] OrderedCollections v1.8.2 [7ae8fcfa] PlantBiophysics v0.17.0 [5edaa67e] PlantGeom v0.19.2 [91a5bcdd] Plots v1.41.6 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XEjvhm/Manifest.toml` [47edcb42] ADTypes v1.22.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.15 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.25.0 [67c07d97] 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Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.47.0+1 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.3+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [8e53e030] libdrm_jll v2.4.125+1 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.58+0 [075b6546] libsixel_jll v1.10.5+0 [9a156e7d] libva_jll v2.23.0+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [009596ad] mtdev_jll v1.1.7+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: accessing `Type.parameters` is deprecated; use `Base.type_parameter(x)` instead │ caller = _type_param(T::TypeEq) at piracies.jl:6 [inlined] └ @ Aqua.Piracy ~/.julia/packages/Aqua/gDh9K/src/piracies.jl:6 ┌ Warning: accessing `Type.parameters` is deprecated; use `Base.type_parameter(x)` instead │ caller = _type_param(T::TypeEq) at piracies.jl:6 [inlined] └ @ Aqua.Piracy ~/.julia/packages/Aqua/gDh9K/src/piracies.jl:6 [ Info: Using default values for parameters [:aₛₕ, :aₛᵥ, :ε, :ΔT] in model Monteith [ Info: Some variables must be initialized before simulation: (photosynthesis = (:aPPFD, :Tₗ, :Cₛ), stomatal_conductance = (:Dₗ, :Cₛ)) (see `to_initialize()`) [ Info: Model Fvcb from process photosynthesis needs a model that is a subtype of AbstractStomatal_ConductanceModel in process stomatal_conductance, but the process is not parameterized in the ModelList. [ Info: Some variables must be initialized before simulation: (photosynthesis = (:aPPFD, :Tₗ, :Cₛ), stomatal_conductance = (:Dₗ, :Cₛ)) (see `to_initialize()`) ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::Dict{Symbol, Tuple}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = mapped_variables(mapping::ModelMapping{PlantSimEngine.MultiScale, Dict{Symbol, Tuple}}, dependency_graph::PlantSimEngine.DependencyGraph{Dict{Symbol, Any}, Any}; verbose::Bool) at compute_mapping.jl:28 └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/compute_mapping.jl:28 Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:117 Expression: ≈(out_df.A_daily[24], sum(out_df.A[1:24] .* 3600.0), atol = 0.001) Evaluated: 2.8493357223383687e6 ≈ 2.973715520018291e6 (atol=0.001) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:117 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:118 Expression: ≈(out_df.A_daily[48], sum(out_df.A[25:48] .* 3600.0), atol = 0.001) Evaluated: 2.8298531824731897e6 ≈ 2.953599882828813e6 (atol=0.001) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:118 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:122 Expression: ≈(out_df.transpiration_daily[24], sum(out_df.λE[1:24] .* 3600.0) / λ_ref, atol = 1.0e-6) Evaluated: 7.314579728362196 ≈ 7.580304404723954 (atol=1.0e-6) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:122 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:123 Expression: ≈(out_df.transpiration_daily[48], sum(out_df.λE[25:48] .* 3600.0) / λ_ref, atol = 1.0e-6) Evaluated: 9.156971669758217 ≈ 9.500975272786084 (atol=1.0e-6) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:123 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:126 Expression: ≈(out_df.Tₗ_mean_daily[24], Statistics.mean(out_df.Tₗ[1:24]), atol = 1.0e-6) Evaluated: 23.786957545946073 ≈ 23.811368370289987 (atol=1.0e-6) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:126 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Multi-rate hourly leaf + daily summary: Test Failed at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:127 Expression: ≈(out_df.Tₗ_mean_daily[48], Statistics.mean(out_df.Tₗ[25:48]), atol = 1.0e-6) Evaluated: 22.934126930078797 ≈ 22.955855484071872 (atol=1.0e-6) Stacktrace: [1] top-level scope @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:49 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PlantBiophysics/E4MBy/test/test-multirate.jl:127 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [ Info: Unsafe comparisons using the function `pmean` has been enabled globally. Use `@unsafe` to enable in a local expression only or `unsafe_comparisons(false)` to turn off unsafe comparisons ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/AXNMp/src/utilities/utilities.jl:719 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Fail Total Time Testing PlantBiophysics | 152 6 158 14m59.7s Unbound type parameters | 1 1 0.2s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.5s Stale dependencies | 1 1 43.0s Compat bounds | 4 4 0.9s Piracy | 1 1 9.8s Persistent tasks | 1 1 2m44.2s File IO | 30 30 2m00.4s Structures | 15 15 47.2s Temperature dependence | 5 5 0.1s Light interception | 2 2 8.4s Stomatal conductance | 2 2 19.5s Energy balance | 25 25 3.6s MTG compatibility | 27 27 3m07.1s Multi-rate | 24 6 30 1m11.0s Multi-rate timestep hints | 12 12 0.6s Multi-rate hourly leaf + daily summary | 12 6 18 46.5s Fitting | 10 10 1m39.4s Uncertainty propagation | 1 1 23.1s Doctests | 1 1 1m11.8s RNG of the outermost testset: Random.Xoshiro(0xdce8c7f7a5aae92d, 0x15f4913a83ad910e, 0x8ff7f9480e39320d, 0x794237bdd9c40f09, 0x3f6de0406c2dffd7) ERROR: LoadError: Some tests did not pass: 152 passed, 6 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PlantBiophysics/E4MBy/test/runtests.jl:17 Testing failed after 1025.36s ERROR: LoadError: Package PlantBiophysics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:326 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1401.81s: package has test failures