Package evaluation to test PhyloSummaries on Julia 1.14.0-DEV.2275 (3ea3bac2a3*) started at 2026-06-03T02:03:53.092 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.63s ################################################################################ # Installation # Installing PhyloSummaries... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [431a9082] + PhyloSummaries v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.125 [ffbed154] + DocStringExtensions v0.9.5 [c2308a5c] + FASTX v2.1.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [d9f16b24] + Functors v0.5.2 [e91730f6] + Hungarian v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.2.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.4 [33ad39ac] + PhyloNetworks v1.3.1 [431a9082] + PhyloSummaries v0.1.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [91c51154] + SentinelArrays v1.4.10 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.11 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.4 [354b36f9] + StringViews v1.3.7 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 19.9 s ✓ PhyloNetworks 16.3 s ✓ PhyloSummaries 2 dependencies successfully precompiled in 38 seconds. 120 already precompiled. Precompilation completed after 64.91s ################################################################################ # Testing # Testing PhyloSummaries Status `/tmp/jl_jbdfBA/Project.toml` [4c88cf16] Aqua v0.8.15 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [33ad39ac] PhyloNetworks v1.3.1 [431a9082] PhyloSummaries v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jbdfBA/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.15 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 [c2308a5c] FASTX v2.1.7 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [d9f16b24] Functors v0.5.2 [e91730f6] Hungarian v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.2.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.4 [33ad39ac] PhyloNetworks v1.3.1 [431a9082] PhyloSummaries v0.1.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [fdea26ae] SIMD v3.7.2 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.11 ⌅ [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.2+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time PhyloSummaries Code quality (Aqua.jl) | 10 10 2m22.8s consensus ToB & level-1: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:163 Expression: res[:hybrid_table] == (blob = [1, 1], node_from = [7, 7], node_to = [2, 3], edge = [2, 3], support_hybrid = [0.6, 0.4], cluster_num = ["2", "3"], cluster = ["B", "C"]) Evaluated: (blob = [1, 1], node_from = [7, 7], node_to = [3, 2], edge = [3, 2], support_hybrid = [0.4, 0.6], cluster_num = ["3", "2"], cluster = ["C", "B"]) == (blob = [1, 1], node_from = [7, 7], node_to = [2, 3], edge = [2, 3], support_hybrid = [0.6, 0.4], cluster_num = ["2", "3"], cluster = ["B", "C"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:156 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:163 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] consensus ToB & level-1: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:221 Expression: res[:hybrid_table] == (blob = [1, 1, 1, 1], node_from = [11, 12, 8, 9], node_to = [6, 1, 4, 3], edge = [6, 1, 4, 3], support_hybrid = [0.5, 0.1, 0.2, 0.2], cluster_num = ["6", "1", "4", "3"], cluster = ["t6", "t1", "t4", "t3"]) Evaluated: (blob = [1, 1, 1, 1], node_from = [9, 8, 12, 11], node_to = [3, 4, 1, 6], edge = [3, 4, 1, 6], support_hybrid = [0.2, 0.2, 0.1, 0.5], cluster_num = ["3", "4", "1", "6"], cluster = ["t3", "t4", "t1", "t6"]) == (blob = [1, 1, 1, 1], node_from = [11, 12, 8, 9], node_to = [6, 1, 4, 3], edge = [6, 1, 4, 3], support_hybrid = [0.5, 0.1, 0.2, 0.2], cluster_num = ["6", "1", "4", "3"], cluster = ["t6", "t1", "t4", "t3"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:156 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:221 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] consensus ToB & level-1: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:244 Expression: res[:hybrid_table] == (blob = [2, 1, 1], node_from = [11, 16, 8], node_to = [8, 5, 11], edge = [8, 5, 8], support_hybrid = [0.6, 0.2, 0.4], cluster_num = ["5,6,7", "5", "1,2,3,4"], cluster = ["b1,c1,c2", "b1", "a1,a2,a3,a4"]) Evaluated: (blob = [2, 1, 1], node_from = [11, 8, 16], node_to = [8, 11, 5], edge = [8, 8, 5], support_hybrid = [0.6, 0.4, 0.2], cluster_num = ["5,6,7", "1,2,3,4", "5"], cluster = ["b1,c1,c2", "a1,a2,a3,a4", "b1"]) == (blob = [2, 1, 1], node_from = [11, 16, 8], node_to = [8, 5, 11], edge = [8, 5, 8], support_hybrid = [0.6, 0.2, 0.4], cluster_num = ["5,6,7", "5", "1,2,3,4"], cluster = ["b1,c1,c2", "b1", "a1,a2,a3,a4"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:156 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:244 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] consensus ToB & level-1: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:300 Expression: res[:hybrid_table] == (blob = [1, 1], node_from = [9, 9], node_to = [1, 10], edge = [1, 8], support_hybrid = [0.4, 0.6], cluster_num = ["1", "5,6,7"], cluster = ["a1", "b1,c1,c2"]) Evaluated: (blob = [1, 1], node_from = [9, 9], node_to = [10, 1], edge = [8, 1], support_hybrid = [0.6, 0.4], cluster_num = ["5,6,7", "1"], cluster = ["b1,c1,c2", "a1"]) == (blob = [1, 1], node_from = [9, 9], node_to = [1, 10], edge = [1, 8], support_hybrid = [0.4, 0.6], cluster_num = ["1", "5,6,7"], cluster = ["a1", "b1,c1,c2"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:156 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:300 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] consensus ToB & level-1: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:316 Expression: res[:hybrid_table] == (blob = [1, 1, 1, 1], node_from = [14, 13, 12, 8], node_to = [3, 9, 7, 2], edge = [3, 8, 7, 2], support_hybrid = [0.2, 0.2, 0.4, 0.2], cluster_num = ["3", "4,5,6", "7", "2"], cluster = ["a4", "b1,c1,c2", "d1", "a3"]) Evaluated: (blob = [1, 1, 1, 1], node_from = [12, 8, 14, 13], node_to = [7, 2, 3, 9], edge = [7, 2, 3, 8], support_hybrid = [0.4, 0.2, 0.2, 0.2], cluster_num = ["7", "2", "3", "4,5,6"], cluster = ["d1", "a3", "a4", "b1,c1,c2"]) == (blob = [1, 1, 1, 1], node_from = [14, 13, 12, 8], node_to = [3, 9, 7, 2], edge = [3, 8, 7, 2], support_hybrid = [0.2, 0.2, 0.4, 0.2], cluster_num = ["3", "4,5,6", "7", "2"], cluster = ["a4", "b1,c1,c2", "d1", "a3"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:156 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:316 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] optimal hybrid choice: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:375 Expression: res[:hybrid_table] == (blob = [2, 2, 1, 1], node_from = [10, 11, 14, 9], node_to = [14, 5, 10, 2], edge = [8, 5, 8, 2], support_hybrid = [0.36, 0.24, 0.32, 0.08], cluster_num = ["1,2,3,4", "5", "5,6,7", "2"], cluster = ["a1,a2,a3,a4", "b1", "b1,c1,c2", "a2"]) Evaluated: (blob = [2, 2, 1, 1], node_from = [11, 10, 14, 9], node_to = [5, 14, 10, 2], edge = [5, 8, 8, 2], support_hybrid = [0.24, 0.36, 0.32, 0.08], cluster_num = ["5", "1,2,3,4", "5,6,7", "2"], cluster = ["b1", "a1,a2,a3,a4", "b1,c1,c2", "a2"]) == (blob = [2, 2, 1, 1], node_from = [10, 11, 14, 9], node_to = [14, 5, 10, 2], edge = [8, 5, 8, 2], support_hybrid = [0.36, 0.24, 0.32, 0.08], cluster_num = ["1,2,3,4", "5", "5,6,7", "2"], cluster = ["a1,a2,a3,a4", "b1", "b1,c1,c2", "a2"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:365 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:375 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] optimal hybrid choice: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:392 Expression: (res[:hybrid_table])[[:support_hybrid, :cluster]] == (support_hybrid = [0.4, 0.1, 0.4, 0.1], cluster = ["b1,c1,c2", "a2", "a1,a2,a3,a4", "b1"]) Evaluated: (support_hybrid = [0.4, 0.1, 0.1, 0.4], cluster = ["b1,c1,c2", "a2", "b1", "a1,a2,a3,a4"]) == (support_hybrid = [0.4, 0.1, 0.4, 0.1], cluster = ["b1,c1,c2", "a2", "a1,a2,a3,a4", "b1"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:365 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_consensusblobs.jl:392 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] level2 nets, 7 taxa: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:22 Expression: res[:hybrid_table] == (blob = [2, 1, 1], node_from = [6, 3, -2], node_to = [8, -7, 9], edge = [13, 15, 17], support_hybrid = [0, 0.6, 0.4], cluster_num = ["5", "5,6,7", "1"], cluster = ["b1", "b1,c1,c2", "a1"]) Evaluated: (blob = [2, 1, 1], node_from = [6, -2, 3], node_to = [8, 9, -7], edge = [13, 17, 15], support_hybrid = [0.0, 0.4, 0.6], cluster_num = ["5", "1", "5,6,7"], cluster = ["b1", "a1", "b1,c1,c2"]) == (blob = [2, 1, 1], node_from = [6, 3, -2], node_to = [8, -7, 9], edge = [13, 15, 17], support_hybrid = [0.0, 0.6, 0.4], cluster_num = ["5", "5,6,7", "1"], cluster = ["b1", "b1,c1,c2", "a1"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:6 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:22 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] level1 nets, 2-cycles, some blob made of 2 bicomps: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:37 Expression: res[:hybrid_table] == (blob = [1, 1], node_from = [-5, 4], node_to = [2, 3], edge = [2, 3], support_hybrid = [0.6, 0.4], cluster_num = ["2", "3"], cluster = ["B", "C"]) Evaluated: (blob = [1, 1], node_from = [4, -5], node_to = [3, 2], edge = [3, 2], support_hybrid = [0.4, 0.6], cluster_num = ["3", "2"], cluster = ["C", "B"]) == (blob = [1, 1], node_from = [-5, 4], node_to = [2, 3], edge = [2, 3], support_hybrid = [0.6, 0.4], cluster_num = ["2", "3"], cluster = ["B", "C"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:29 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:37 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] misc: many 2&3-cycles, use net weights, expected errors: Test Failed at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:55 Expression: res[:hybrid_table] == (blob = [1, 1], node_from = [5, -7], node_to = [4, 6], edge = [5, 8], support_hybrid = [0.0, 0.4], cluster_num = ["4", "5"], cluster = ["d", "e"]) Evaluated: (blob = [1, 1], node_from = [-7, 5], node_to = [6, 4], edge = [8, 5], support_hybrid = [0.4, 0.0], cluster_num = ["5", "4"], cluster = ["e", "d"]) == (blob = [1, 1], node_from = [5, -7], node_to = [4, 6], edge = [5, 8], support_hybrid = [0.0, 0.4], cluster_num = ["4", "5"], cluster = ["d", "e"]) Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:5 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:45 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloSummaries/BxiNY/test/test_blobsupport.jl:55 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Test Summary: | Pass Fail Total Time PhyloSummaries.jl | 191 10 201 4m05.2s consensus trees | 27 27 36.0s consensus blobs | 124 7 131 2m52.8s misc | 9 9 2.1s blobcompatible | 3 3 0.5s count blobs | 18 18 20.1s blobs & bipartitions with chains of 2-blobs | 22 22 22.7s consensus ToB & level-1 | 58 5 63 1m59.4s blob compatibility filtering, show | 9 9 4.9s optimal hybrid choice | 5 2 7 3.1s blobpartitions_support | 40 3 43 26.6s level2 nets, 7 taxa | 11 1 12 17.2s level1 nets, 2-cycles, some blob made of 2 bicomps | 9 1 10 6.1s misc: many 2&3-cycles, use net weights, expected errors | 20 1 21 3.3s RNG of the outermost testset: Random.Xoshiro(0x0cab41cf63cd5c18, 0xcbf5c61decd47f29, 0x78767f3389673fa8, 0x339a35841a28ad88, 0x341486c7906bd693) ERROR: LoadError: Some tests did not pass: 191 passed, 10 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyloSummaries/BxiNY/test/runtests.jl:21 Testing failed after 424.06s ERROR: LoadError: Package PhyloSummaries errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:326 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 527.44s: package has test failures