Package evaluation to test OnlinePCA on Julia 1.14.0-DEV.2212 (062a90bc8c*) started at 2026-05-26T14:24:04.184 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.7s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed URIs ──────────────────────── v1.6.1 Installed DataStructures ────────────── v0.19.4 Installed MacroTools ────────────────── v0.5.16 Installed GLM ───────────────────────── v1.9.4 Installed CodecZstd ─────────────────── v0.8.7 Installed FillArrays ────────────────── v1.16.0 Installed s2n_tls_jll ───────────────── v1.7.3+0 Installed InlineStrings ─────────────── v1.4.5 Installed FilePathsBase ─────────────── v0.9.24 Installed Mux ───────────────────────── v1.0.2 Installed DelimitedFiles ────────────── v1.9.1 Installed libaec_jll ────────────────── v1.1.6+0 Installed MPICH_jll ─────────────────── v5.0.1+0 Installed StatsModels ───────────────── v0.7.9 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed OnlinePCA ─────────────────── v0.3.10 Installed aws_c_cal_jll ─────────────── v0.9.13+0 Installed aws_c_common_jll ──────────── v0.12.6+0 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.1 Installed StatsBase ─────────────────── v0.34.10 Installed Observables ───────────────── v0.5.5 Installed CSV ───────────────────────── v0.10.16 Installed TranscodingStreams ────────── v0.11.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed ShiftedArrays ─────────────── v2.0.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 (no artifacts on this platform) Installed Kaleido_jll ───────────────── v0.2.1+0 Installed OrderedCollections ────────── v1.8.1 Installed WebSockets ────────────────── v1.6.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed TensorCore ────────────────── v0.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed FunctionalCollections ─────── v0.5.0 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed dlfcn_win32_jll ───────────── v1.4.2+0 (no artifacts on this platform) Installed Xorg_libpciaccess_jll ─────── v0.19.0+0 Installed MPIABI_jll ────────────────── v0.1.5+0 Installed Colors ────────────────────── v0.13.1 Installed PrecompileTools ───────────── v1.3.4 Installed Hiccup ────────────────────── v0.2.2 Installed SentinelArrays ────────────── v1.4.10 Installed MbedTLS ───────────────────── v1.1.10 Installed OpenSSL ───────────────────── v1.6.1 Installed TextWrap ──────────────────── v1.0.2 Installed ProgressMeter ─────────────── v1.11.0 Installed mpif_jll ──────────────────── v0.1.7+0 Installed LoggingExtras ─────────────── v1.2.0 Installed AssetRegistry ─────────────── v0.1.1 Installed IrrationalConstants ───────── v0.2.6 Installed QuadGK ────────────────────── v2.11.3 Installed Widgets ───────────────────── v0.6.7 Installed ColorTypes ────────────────── v0.12.1 Installed ColorVectorSpace ──────────── v0.11.0 Installed StringManipulation ────────── v0.4.4 Installed Requires ──────────────────── v1.3.1 Installed aws_c_s3_jll ──────────────── v0.11.5+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Pidfile ───────────────────── v1.3.0 Installed LogExpFunctions ───────────── v0.3.29 Installed HDF5_jll ──────────────────── v2.1.2+0 Installed ArgParse ──────────────────── v1.2.0 Installed aws_c_io_jll ──────────────── v0.26.3+0 Installed HTTP ──────────────────────── v1.11.0 Installed BitFlags ──────────────────── v0.1.9 Installed OpenMPI_jll ───────────────── v5.0.11+0 Installed Hwloc_jll ─────────────────── v2.13.0+1 Installed Parsers ───────────────────── v2.8.4 Installed JSON ──────────────────────── v0.21.4 Installed Rmath ─────────────────────── v0.9.0 Installed PrettyTables ──────────────── v3.3.2 Installed Distributions ─────────────── v0.25.125 Installed PlotlyKaleido ─────────────── v2.3.1 Installed aws_c_sdkutils_jll ────────── v0.2.4+1 Installed MatrixMarket ──────────────── v0.5.2 Installed Parameters ────────────────── v0.12.3 Installed aws_checksums_jll ─────────── v0.2.10+0 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed WebIO ─────────────────────── v0.8.21 Installed XML2_jll ──────────────────── v2.13.9+0 Installed PtrArrays ─────────────────── v1.4.0 Installed Reexport ──────────────────── v1.2.2 Installed Blink ─────────────────────── v0.12.9 Installed SpecialFunctions ──────────── v2.7.2 Installed PlotlyBase ────────────────── v0.8.23 Installed SimpleBufferStream ────────── v1.2.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed DataFrames ────────────────── v1.8.2 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.2 Installed JSExpr ────────────────────── v0.5.4 Installed PooledArrays ──────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MPIPreferences ────────────── v0.1.12 Installed aws_c_http_jll ────────────── v0.10.13+0 Installed WeakRefStrings ────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Mustache ──────────────────── v1.0.21 Installed SortingAlgorithms ─────────── v1.2.2 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed Crayons ───────────────────── v4.1.1 Installed PDMats ────────────────────── v0.11.37 Installed ColorSchemes ──────────────── v3.31.0 Installed HDF5 ──────────────────────── v0.17.3 Installed aws_c_compression_jll ─────── v0.3.2+0 Installed UnPack ────────────────────── v1.0.2 Installed Lazy ──────────────────────── v0.15.1 Installed aws_c_auth_jll ────────────── v0.9.6+0 Installed MPItrampoline_jll ─────────── v5.5.6+0 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed PlotlyJS ──────────────────── v0.18.18 Installing 28 artifacts Installed artifact aws_c_sdkutils 54.9 KiB Installed artifact aws_c_compression 13.4 KiB Installed artifact aws_c_io 181.7 KiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact aws_c_http 387.4 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact s2n_tls 1.8 MiB Installed artifact XML2 2.5 MiB Installed artifact mathjax 18.7 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact web 215.6 KiB Installed artifact aws_c_common 285.2 KiB Installed artifact plotly 2.3 MiB Installed artifact Rmath 121.9 KiB Installed artifact MPICH 8.8 MiB Installed artifact HDF5 6.1 MiB Installed artifact aws_c_auth 130.3 KiB Installed artifact libaec 50.0 KiB Installed artifact aws_c_s3 143.0 KiB Installed artifact aws_checksums 87.0 KiB Installed artifact plotly-artifacts 1.7 MiB Installed artifact aws_c_cal 1.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact testfiles 6.2 MiB Installed artifact electronjs_app 79.1 MiB Installed artifact Kaleido 75.3 MiB Updating `~/.julia/environments/v1.14/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.125 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.4 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.10 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.3 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4bf6c08295346efba58bb2d5f8c52984efed7f27/build.log` Installation completed after 90.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.0 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.0 s ✓ MacroTools 1.6 s ✓ InlineStrings 0.8 s ✓ Reexport 0.9 s ✓ TensorCore 2.0 s ✓ IrrationalConstants 1.1 s ✓ DataValueInterfaces 0.9 s ✓ StatsAPI 1.5 s ✓ Observables 1.3 s ✓ TranscodingStreams 1.0 s ✓ TextWrap 1.0 s ✓ LaTeXStrings 1.2 s ✓ Statistics 1.0 s ✓ PtrArrays 1.0 s ✓ SimpleBufferStream 1.0 s ✓ DataAPI 1.3 s ✓ URIs 0.9 s ✓ InvertedIndices 0.9 s ✓ BitFlags 0.9 s ✓ ShiftedArrays 1.1 s ✓ WorkerUtilities 2.2 s ✓ FillArrays 0.9 s ✓ UnPack 1.4 s ✓ OrderedCollections 1.2 s ✓ DocStringExtensions 0.8 s ✓ IteratorInterfaceExtensions 1.8 s ✓ Crayons 1.0 s ✓ DelimitedFiles 1.3 s ✓ Requires 1.5 s ✓ ConcurrentUtilities 2.4 s ✓ ProgressMeter 2.4 s ✓ SentinelArrays 1.4 s ✓ LoggingExtras 2.2 s ✓ PDMats 1.2 s ✓ Compat 1.5 s ✓ Preferences 1.1 s ✓ Pidfile 1.6 s ✓ ExceptionUnwrapping 1.3 s ✓ FunctionalCollections 6.1 s ✓ Lazy 1.7 s ✓ Hiccup 2.0 s ✓ CodecZstd 1.2 s ✓ CodecZlib 1.8 s ✓ ArgParse 1.6 s ✓ Statistics → SparseArraysExt 4.1 s ✓ FixedPointNumbers 1.1 s ✓ AliasTables 1.0 s ✓ Missings 1.1 s ✓ PooledArrays 4.4 s ✓ OpenSSL 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 1.1 s ✓ FillArrays → FillArraysStatisticsExt 1.2 s ✓ Parameters 3.8 s ✓ DataStructures 1.5 s ✓ LogExpFunctions 0.9 s ✓ TableTraits 2.1 s ✓ FillArrays → FillArraysPDMatsExt 1.1 s ✓ Compat → CompatLinearAlgebraExt 2.0 s ✓ PrecompileTools 2.3 s ✓ JLLWrappers 2.3 s ✓ MPIPreferences 2.0 s ✓ MatrixMarket 2.9 s ✓ ColorTypes 1.3 s ✓ SortingAlgorithms 2.5 s ✓ QuadGK 2.0 s ✓ Tables 2.6 s ✓ FilePathsBase 4.0 s ✓ StringManipulation 17.5 s ✓ Parsers 2.2 s ✓ Kaleido_jll 2.4 s ✓ Rmath_jll 1.6 s ✓ MicrosoftMPI_jll 2.3 s ✓ OpenSpecFun_jll 2.2 s ✓ aws_c_common_jll 1.6 s ✓ dlfcn_win32_jll 2.2 s ✓ libaec_jll 2.2 s ✓ Xorg_libpciaccess_jll 2.2 s ✓ Libiconv_jll 2.3 s ✓ MbedTLS_jll 2.4 s ✓ s2n_tls_jll 4.6 s ✓ MPItrampoline_jll 1.4 s ✓ ColorTypes → StyledStringsExt 9.0 s ✓ Colors 4.4 s ✓ ColorVectorSpace 5.0 s ✓ StatsBase 1.5 s ✓ Mustache 3.5 s ✓ FilePathsBase → FilePathsBaseTestExt 1.5 s ✓ FilePathsBase → FilePathsBaseMmapExt 43.4 s ✓ PrettyTables 4.2 s ✓ JSON 1.4 s ✓ InlineStrings → ParsersExt 1.9 s ✓ Rmath 5.8 s ✓ SpecialFunctions 2.3 s ✓ aws_c_cal_jll 2.4 s ✓ aws_c_sdkutils_jll 2.3 s ✓ aws_checksums_jll 2.3 s ✓ aws_c_compression_jll 2.3 s ✓ XML2_jll 2.5 s ✓ MbedTLS 2.3 s ✓ Widgets 9.9 s ✓ ColorSchemes 1.8 s ✓ PDMats → StatsBaseExt 89.0 s ✓ DataFrames 1.5 s ✓ AssetRegistry 1.8 s ✓ PlotlyKaleido 3.6 s ✓ WeakRefStrings 2.9 s ✓ HypergeometricFunctions 2.0 s ✓ ColorVectorSpace → SpecialFunctionsExt 2.5 s ✓ aws_c_io_jll 2.5 s ✓ Hwloc_jll 26.3 s ✓ HTTP 14.5 s ✓ PlotlyBase 26.5 s ✓ CSV 3.5 s ✓ StatsFuns 2.4 s ✓ aws_c_http_jll 2.5 s ✓ MPICH_jll 4.4 s ✓ OpenMPI_jll 4.7 s ✓ MPIABI_jll WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 4.5 s ✓ WebSockets 8.1 s ✓ Mux 13.8 s ✓ PlotlyBase → DataFramesExt 5.7 s ✓ StatsModels 10.0 s ✓ Distributions 2.3 s ✓ aws_c_auth_jll 4.4 s ✓ mpif_jll 8.3 s ✓ WebIO 5.8 s ✓ GLM 4.2 s ✓ Distributions → DistributionsTestExt 8.6 s ✓ PlotlyBase → DistributionsExt 2.4 s ✓ aws_c_s3_jll 8.4 s ✓ JSExpr 2.6 s ✓ HDF5_jll 12.5 s ✓ Blink 12.1 s ✓ HDF5 18.1 s ✓ PlotlyJS 13.2 s ✓ PlotlyJS → CSVExt 19.3 s ✓ PlotlyJS → DataFramesExt 13.1 s ✓ OnlinePCA 137 dependencies successfully precompiled in 642 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Precompilation completed after 676.96s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_MDu1OG/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.125 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_MDu1OG/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.2 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.125 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.4 [f67ccb44] + HDF5 v0.17.3 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.8.0 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.4.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.3 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.7.2 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.10 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.2 [3eaba693] + StatsModels v0.7.9 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.3 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.14.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.13.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.5.1+0 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.20.0+1 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.3+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.101+0 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2026.5.14 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.33+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.69.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_MDu1OG/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.125 [1a297f60] FillArrays v1.16.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MDu1OG/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.4 [f67ccb44] HDF5 v0.17.3 [cd3eb016] HTTP v1.11.0 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.18 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.10 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.3 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.13.0+1 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_q84SLG Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Parsed args: binfile => /tmp/jl_q84SLG/Data.zst csvfile => /tmp/jl_q84SLG/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_q84SLG/Data.mtx binfile => /tmp/jl_q84SLG/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: bincoofile => /tmp/jl_q84SLG/Data.bincoo binfile => /tmp/jl_q84SLG/Data.bincoo.zst ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_q84SLG/Data.zst outdir => /tmp/jl_BqVPnh pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_q84SLG/Data.mtx.zst outdir => /tmp/jl_wUSSMx pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_BqVPnh/Feature_Vars.csv binfile => /tmp/jl_q84SLG/Data.zst outdir => /tmp/jl_BqVPnh rowcv2list => /tmp/jl_BqVPnh/Feature_CV2s.csv rowmeanlist => /tmp/jl_BqVPnh/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_q84SLG/Data.zst samplelist => /tmp/jl_BqVPnh/Sample_NoCounts.csv outdir => /tmp/jl_BqVPnh thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_BqVPnh/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_q84SLG/Data.zst samplelist => outdir => /tmp/jl_BqVPnh thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_BqVPnh/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_q84SLG/Data.zst samplelist => /tmp/jl_BqVPnh/Sample_NoCounts.csv outdir => /tmp/jl_BqVPnh thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => "/tmp/jl_BqVPnh/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_BqVPnh/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:55 Progress: 1%|▍ | ETA: 0:03:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:04 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:36 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:04:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:03:33 Progress: 1%|▍ | ETA: 0:04:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:23 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:04 Progress: 1%|▍ | ETA: 0:05:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:17 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:34 Progress: 1%|▍ | ETA: 0:02:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:10:34 Progress: 1%|▍ | ETA: 0:08:16 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:15:14 Progress: 1%|▍ | ETA: 0:12:16 Progress: 34%|██████████████▏ | ETA: 0:00:15 Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 Progress: 1%|▎ | ETA: 0:04:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:45 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:41 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:44 Progress: 1%|▍ | ETA: 0:10:08 Progress: 34%|█████████████▊ | ETA: 0:00:13 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:12 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:05 Progress: 34%|█████████████▊ | ETA: 0:00:12 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1681 running 1 of 1 signal (10): User defined signal 1 var_occurs_inside at /source/src/subtype.c:3170:1 var_occurs_inside at /source/src/subtype.c:3182:13 var_occurs_invariant at /source/src/subtype.c:1067:12 [inlined] subtype_unionall at /source/src/subtype.c:1138:27 subtype at /source/src/subtype.c:1797:16 exists_subtype at /source/src/subtype.c:2060:13 [inlined] forall_exists_subtype at /source/src/subtype.c:2089:15 ijl_subtype_env at /source/src/subtype.c:2551:19 [inlined] ijl_subtype_env at /source/src/subtype.c:2515:18 subtype_tuple_tail at /source/src/subtype.c:1556:18 [inlined] subtype_tuple at /source/src/subtype.c:1638:15 [inlined] subtype at /source/src/subtype.c:1834:20 exists_subtype at /source/src/subtype.c:2060:13 [inlined] forall_exists_subtype at /source/src/subtype.c:2089:15 ijl_subtype_env at /source/src/subtype.c:2551:19 [inlined] ijl_subtype_env at /source/src/subtype.c:2515:18 check_interferences_covers at /source/src/gf.c:2793:17 [inlined] sort_mlmatches at /source/src/gf.c:4778:26 [inlined] ml_matches at /source/src/gf.c:5146:31 ml_matches at /source/src/gf.c:4887:16 [inlined] ijl_matching_methods at /source/src/gf.c:3250:12 [inlined] ijl_matching_methods at /source/src/gf.c:3237:26 _methods_by_ftype at ./runtime_internals.jl:1629:38 [inlined] _findall at ./../usr/share/julia/Compiler/src/methodtable.jl:105:21 [inlined] #findall#5 at ./../usr/share/julia/Compiler/src/methodtable.jl:70:6 [inlined] findall at ./../usr/share/julia/Compiler/src/methodtable.jl:70:27 [inlined] #findall#13 at ./../usr/share/julia/Compiler/src/methodtable.jl:119:29 findall at ./../usr/share/julia/Compiler/src/methodtable.jl:110:27 [inlined] find_simple_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:390:9 #find_method_matches#139 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:350:20 [inlined] find_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:343:71 jfptr_find_method_matches_3.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:131:41 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2997:1162 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3105:46 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3098:4 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3249:15 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3267:20 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3637:10 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4044:136 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4001:4 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4585:643 jfptr_typeinf_local_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4863:135 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1537:123 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1722:2 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1731:17 jfptr_typeinf_ext_toplevel_3.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] jl_type_infer at /source/src/gf.c:463:35 jl_compile_method_internal at /source/src/gf.c:3654:24 _jl_invoke at /source/src/gf.c:4119:16 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 #rsgd#69 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/rsgd.jl:63:136 rsgd at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/rsgd.jl:47:409 unknown function (ip: 0x715f31520934) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/rsgd:114:244 unknown function (ip: 0x715f31505ccf) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 _include at ./loading.jl:3173:35 include at ./Base.jl:326:4 exec_options at ./client.jl:355:495 _start at ./client.jl:596:35 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x715f479bd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Progress: 1%|▎ | ETA: 0:14:15┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000715f2d1fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:596 _start() ╎ 1 @Base/client.jl:355 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:326 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 1 @OnlinePCA/bin/rsgd:114 main() ╎ ╎ 1 @OnlinePCA/…rc/rsgd.jl:47 kwcall(::@NamedTuple{input::String, scale… ╎ ╎ 1 @OnlinePCA/…rc/rsgd.jl:63 rsgd(; input::String, outdir::Nothing, s… Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:05:44 Progress: 1%|▍ | ETA: 0:06:35 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:34 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:18 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:07:03 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### SVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:16:15 Progress: 1%|▍ | ETA: 0:13:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:08 Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 777 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Progress: 1%|▎ | ETA: 0:13:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007f2024513940 Total snapshots: 537. Utilization: 0% ╎537 @Base/task.jl:1168 wait_forever() 536╎ 537 @Base/task.jl:1246 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000782e8f2af1c0 Total snapshots: 560. Utilization: 0% ╎560 @Base/task.jl:1168 wait_forever() 559╎ 560 @Base/task.jl:1246 wait() Parsed args: scale => "ftt" logdir => "/tmp/jl_BqVPnh" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_q84SLG/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_BqVPnh/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_BqVPnh" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing [777] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_svrg.jl:74 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 60608427 (Pool: 60607550; Big: 877); GC: 37 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 34787963 (Pool: 34786903; Big: 1060); GC: 36 [1690] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:145 initialize at /source/src/codegen.cpp:370:10 tbaa at /source/src/codegen.cpp:2114:30 [inlined] literal_pointer_val at /source/src/cgutils.cpp:747:64 emit_isa at /source/src/cgutils.cpp:2084:28 emit_typecheck at /source/src/cgutils.cpp:2186:63 emit_builtin_call at /source/src/codegen.cpp:4358:27 emit_call at /source/src/codegen.cpp:5774:41 emit_expr at /source/src/codegen.cpp:6677:66 emit_ssaval_assign at /source/src/codegen.cpp:6194:25 emit_stmtpos at /source/src/codegen.cpp:6497:27 [inlined] emit_function at /source/src/codegen.cpp:9788:25 jl_emit_code at /source/src/codegen.cpp:10127:57 jl_emit_codeinst at /source/src/codegen.cpp:10192:83 jl_emit_codeinsts_to_jit_impl at /source/src/jitlayers.cpp:472:49 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1717:157 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1723:5 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1731:17 jfptr_typeinf_ext_toplevel_3.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] jl_type_infer at /source/src/gf.c:463:35 jl_compile_method_internal at /source/src/gf.c:3654:24 _jl_invoke at /source/src/gf.c:4119:16 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/svrg:120:256 unknown function (ip: 0x72a55c505e7f) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 _include at ./loading.jl:3173:35 include at ./Base.jl:326:4 exec_options at ./client.jl:355:495 _start at ./client.jl:596:35 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x72a5729ca249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 11838564 (Pool: 11838391; Big: 173); GC: 8 PkgEval terminated after 2808.31s: test duration exceeded the time limit