Package evaluation to test StructuralIdentifiability on Julia 1.14.0-DEV.2207 (8c4818189c*) started at 2026-05-17T16:05:35.092 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.1s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [220ca800] + StructuralIdentifiability v0.5.21 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.48.6 [a9b6321e] + Atomix v1.1.3 [861a8166] + Combinatorics v1.1.0 [864edb3b] + DataStructures v0.19.4 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.10.3 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.8.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.54.2 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.7 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [73480bc8] + RationalFunctionFields v0.3.1 [220ca800] + StructuralIdentifiability v0.5.21 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.1 ⌅ [e134572f] + FLINT_jll v301.400.1+0 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.3 s ✓ FLINT_jll 31.1 s ✓ Nemo 137.6 s ✓ Groebner 12.9 s ✓ ParamPunPam 14.0 s ✓ RationalFunctionFields 16.2 s ✓ StructuralIdentifiability 6 dependencies successfully precompiled in 216 seconds. 71 already precompiled. Precompilation completed after 241.76s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_XhlmDr/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.48.6 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.1.0 [864edb3b] DataStructures v0.19.4 [0b43b601] Groebner v0.10.3 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.54.2 [3e851597] ParamPunPam v0.5.7 [aea7be01] PrecompileTools v1.3.4 [27ebfcd6] Primes v0.5.7 [73480bc8] RationalFunctionFields v0.3.1 [276daf66] SpecialFunctions v2.7.2 [220ca800] StructuralIdentifiability v0.5.21 ⌅ [98d24dd4] TestSetExtensions v3.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XhlmDr/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.48.6 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.3 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.1.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.4 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.10.3 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.8.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.54.2 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.7 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [73480bc8] RationalFunctionFields v0.3.1 [431bcebd] SciMLPublic v1.0.1 [276daf66] SpecialFunctions v2.7.2 [aedffcd0] Static v1.4.0 [220ca800] StructuralIdentifiability v0.5.21 ⌅ [98d24dd4] TestSetExtensions v3.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.1 ⌅ [e134572f] FLINT_jll v301.400.1+0 [656ef2d0] OpenBLAS32_jll v0.3.33+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Installed ImplicitDiscreteSolve ─ v2.1.0 Updating `/tmp/jl_XhlmDr/Project.toml` ⌅ [861a8166] ↓ Combinatorics v1.1.0 ⇒ v1.0.2 [loaded: v1.1.0] [961ee093] + ModelingToolkit v11.26.3 Updating `/tmp/jl_XhlmDr/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [6e696c72] + AbstractPlutoDingetjes v1.3.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.25.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [e2ed5e7c] + Bijections v0.2.2 [caf10ac8] + BipartiteGraphs v0.1.7 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.12.1 ⌅ [861a8166] ↓ Combinatorics v1.1.0 ⇒ v1.0.2 [loaded: v1.1.0] [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.4 [187b0558] + ConstructionBase v1.6.0 [85a47980] + Dictionaries v0.4.6 [2b5f629d] + DiffEqBase v7.5.0 [459566f4] + DiffEqCallbacks v4.17.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.18 ⌅ [5b8099bc] + DomainSets v0.7.18 [7c1d4256] + DynamicPolynomials v0.6.6 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.20 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.3.2 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.31.0 [f6369f11] + ForwardDiff v1.3.3 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.8.0 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [3263718b] + ImplicitDiscreteSolve v2.1.0 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.28.0 [ba0b0d4f] + Krylov v0.10.6 [87fe0de2] + LineSearch v0.1.9 [7ed4a6bd] + LinearSolve v3.79.0 [e6f89c97] + LoggingExtras v1.2.0 [bb5d69b7] + MaybeInplace v0.1.4 [961ee093] + ModelingToolkit v11.26.3 [7771a370] + ModelingToolkitBase v1.36.2 [6bb917b9] + ModelingToolkitTearing v1.13.5 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v2.25.1 [5959db7a] + NonlinearSolveFirstOrder v2.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bbf590c4] + OrdinaryDiffEqCore v4.2.0 [e409e4f3] + PoissonRandom v0.4.8 [d236fae5] + PreallocationTools v1.2.0 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.0 [189a3867] + Reexport v1.2.2 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [9dfe8606] + SCCNonlinearSolve v1.13.0 [1bc83da4] + SafeTestsets v0.1.0 [0bca4576] + SciMLBase v3.13.0 [19f34311] + SciMLJacobianOperators v0.1.13 ⌅ [a6db7da4] + SciMLLogging v1.10.1 [c0aeaf25] + SciMLOperators v1.21.0 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.11.1 [699a6c99] + SimpleTraits v0.9.5 [0c0c59c1] + StarAlgebras v0.3.0 [64909d44] + StateSelection v1.9.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [2efcf032] + SymbolicIndexingInterface v0.3.47 [19f23fe9] + SymbolicLimits v1.1.0 [d1185830] + SymbolicUtils v4.29.3 [0c5d862f] + Symbolics v7.24.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [d30d5f5c] + WeakCacheSets v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Updating `/tmp/jl_XhlmDr/Project.toml` [0c5d862f] + Symbolics v7.24.0 Manifest No packages added to or removed from `/tmp/jl_XhlmDr/Manifest.toml` WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, IntervalSets.AbstractInterval{T} where T) in module IntervalSetsRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module IntervalSetsRecipesBaseExt on the same line (check for duplicate calls to `include`). ┌ Warning: Replacing module `IntervalSetsRecipesBaseExt` └ @ Base loading.jl:2725 [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a, b, c, d [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y, y2 [ Info: Summary of the model: [ Info: State variables: x0, x1, x2, x3 [ Info: Parameters: a1, a2, b1, b2, ka, kc, n [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, E, A, I, J, C, Ninv [ Info: Parameters: alpha, b, g1, g2, k, q, r [ Info: Inputs: [ Info: Outputs: y, y2 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y1, y2, y3, y4, y5 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y0, y1, y2, y3, y4 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y0, y1, y2, y3, y4, y5 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x, y, v, w, z [ Info: Parameters: a, b, beta, c, d, h, k, lm, q, u [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: s, i, r, x1, x2 [ Info: Parameters: M, b0, b1, g, mu, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6 [ Info: Parameters: k1, k2, k3, k4, k5, k6 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y, z, w [ Info: Parameters: a, b, c, d, e, f [ Info: Inputs: [ Info: Outputs: g [ Info: Summary of the model: [ Info: State variables: S, L, In, Q [ Info: Parameters: Ninv, a, b, e, g, s [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, R, W [ Info: Parameters: Dd, T, a, d, dr, e, g, r, rR [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: P0, P1, P2, P3, P4, P5 [ Info: Parameters: Ks, M, Mar, alpa, beta, beta_SA, beta_SI, phi, siga1, siga2 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: EGFR, pEGFR, pEGFR_Akt, Akt, pAkt, S6, pAkt_S6, pS6, EGF_EGFR [ Info: Parameters: EGFR_turnover, a1, a2, a3, reaction_1_k1, reaction_1_k2, reaction_2_k1, reaction_2_k2, reaction_3_k1, reaction_4_k1, reaction_5_k1, reaction_5_k2, reaction_6_k1, reaction_7_k1, reaction_8_k1, reaction_9_k1 [ Info: Inputs: pro_EGFR [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: p1, p2, p3, p4 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: k01, k12, k13, k14, k21, k31, k41 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: b, c, d, k1, k2, q1, q2, s, w1, w2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x4, x5, x6, x7 [ Info: Parameters: k10, k5, k6, k7, k8, k9 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, In, Tr, N [ Info: Parameters: a, b, d, g, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I, R, Q [ Info: Parameters: beta, gamma, psi, v [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10 [ Info: Parameters: t1, t10, t11, t12, t13, t14, t15, t16, t17, t18, t19, t2, t20, t21, t22, t3, t4, t5, t6, t7, t8, t9 [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6, y7, y8 [ Info: Summary of the model: [ Info: State variables: A, S, I, R [ Info: Parameters: K, c, gamma, mu, phi [ Info: Inputs: u1 [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I, R, C, D [ Info: Parameters: N, beta, mu, pp, q, r [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, I, J, R, U [ Info: Parameters: alpha, beta, eta, xi [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I [ Info: Parameters: K, N, beta, gamma [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: A, S, E, I [ Info: Parameters: K, N, beta, epsilon, gamma, mu, r [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, E, I, De, Di, F [ Info: Parameters: N, beta, beta_d, gamma, gamma_d, mu_0, mu_d, mu_i, nu, phi, phi_e, s, s_d [ Info: Inputs: q [ Info: Outputs: y1, y2, y5, y3, y4, y6 [ Info: Summary of the model: [ Info: State variables: x, y, z, w, v [ Info: Parameters: b1, b2, b3, b4, b5, d1, k2, k3, k4, k5, m1, m3, m4, mu2, mu3, mu4, mu5, r1, r2, r3, r4 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: T, L, N, C, I, M [ Info: Parameters: KC, KL, KN, KT, a, alpha1, alpha2, b, beta, c1, f, g, gI, gamma, gt, h, m, muI, p, pI, pt, q, r2, ucte, w [ Info: Inputs: u1, D, u2 [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, E, In, Cu [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I [ Info: Parameters: N, alpha, beta, lambda [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, U, I [ Info: Parameters: N, beta, d, w, z [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: beta, cry, zea, beta10, OHbeta10, betaio, OHbetaio [ Info: Parameters: kOHbeta10, kbeta, kbeta10, kcryOH, kcrybeta, kzea [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: mRNA, GFP, enz, mRNAenz [ Info: Parameters: b, d1, d2, d3, kTL [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: p1, p10, p11, p12, p13, p14, p15, p16, p17, p18, p20, p21, p22, p23, p24, p25, p3, p4, p5, p6, p7, p8, p9 [ Info: Inputs: u1 [ Info: Outputs: y1, y2, y3, y4 [ Info: Summary of the model: [ Info: State variables: N, E, S, M, P [ Info: Parameters: delta_EL, delta_LM, delta_NE, mu_EE, mu_LE, mu_LL, mu_M, mu_N, mu_P, mu_PE, mu_PL, rho_E, rho_P [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10, x11, x12, x13, x14, x15, x16, x17, x18, x19, x20 [ Info: Parameters: km, p1, p10, p11, p12, p13, p14, p15, p16, p17, p18, p19, p2, p20, p3, p4, p5, p6, p7, p8, p9, vm [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6, y7, y8, y9, y10, y11, y12, y13, y14, y15, y16, y17, y18, y19, y20 [ Info: Summary of the model: [ Info: State variables: Ca, Cb, T, Tj, Arr [ Info: Parameters: Ca0, DH, E, R, Ta, Th, UA, V, Vh, cp, cph, k0, ro, roh [ Info: Inputs: u1, u2 [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: q1, q3, q35, q36, q7 [ Info: Parameters: R, S, V3, V36, k3, k4, k5, k6, k7 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: C, L, B, P, I [ Info: Parameters: ai, alpha, ap, beta, ks, rhob, rhoc, rhoi, rhol, rhop, taob, taoc, taoi, taop [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5 [ Info: Parameters: k2, k3, k4 [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: pi1, pi2, pi3 [ Info: Parameters: A11, A12, A13, A21, A22, A23, A31, A32, A33, B11, B21, B31, g1, g2, g3 [ Info: Inputs: u1 [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: pi1, pi2, pi3 [ Info: Parameters: A11, A12, A13, A21, A22, A23, A31, A32, A33, B11, B21, B31, g1, g2, g3 [ Info: Inputs: u1 [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: beta11, beta12, beta21, beta22, r1, r2 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: T0, k, k1, k2, k3, k4, r1, r3 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: Sd, Sn, Ad, An, I [ Info: Parameters: ba, bi, delta, ea, es, f, gai, gir, h1, h2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, I, A, Q, J, R [ Info: Parameters: b, d1, d2, d3, d4, d5, d6, ea, ej, eq, g1, g2, k1, k2, l, m1, m2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I [ Info: Parameters: K, L, N, b, e, g, m, r [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: Y2, Y1, Y3, Y4, Z0, Y0, Z1, Z2, Z3, w1, w2, I1, I4 [ Info: Parameters: D0, D1, D2, D3, D4, E0, E1, E2, E3, E4, J1, J2, J3, Tau, f1, m1, m2, m3, n, n1, n2, n3 [ Info: Inputs: [ Info: Outputs: O1, O2, O3, O4, O6, O7, O8, O9, O10 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, d_T, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, d_T, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, d_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, d_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: A, I, H, R, D, E [ Info: Parameters: N, a, c1, c2, d, h, r1, r2, r3, s [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10, x11, x12, x13, x14, x15 [ Info: Parameters: a1, a2, a3, c1, c1a, c1c, c2, c2a, c2c, c3, c3a, c3c, c4, c4a, c5, c5a, c6a, e1a, e2a, i1, i1a, k1, k2, k3, k_deg, k_prod, kv, t1, t2 [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6 Test Summary: | Total Time Benchmarks are valid | 0 45.1s [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/31snG/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.160479 seconds (874.77 k allocations: 48.411 MiB, 99.57% compilation time) 0.001642 seconds (6.67 k allocations: 288.391 KiB) 0.002195 seconds (10.77 k allocations: 483.297 KiB) 0.002056 seconds (10.74 k allocations: 478.188 KiB) 0.002453 seconds (14.49 k allocations: 633.016 KiB) 0.001342 seconds (7.92 k allocations: 358.992 KiB) 0.001014 seconds (7.45 k allocations: 300.180 KiB) 15.540835 seconds (5.85 M allocations: 333.715 MiB, 0.91% gc time, 99.81% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.330360 seconds (94.12 k allocations: 5.621 MiB, 98.36% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.011485 seconds (9.44 k allocations: 509.211 KiB, 89.97% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003246 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 1.796930123 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 0.057806011 seconds ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 31 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16AttributeSetNode9getSortedERNS_11LLVMContextENS_8ArrayRefINS_9AttributeEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZNK4llvm13AttributeList17addParamAttributeERNS_11LLVMContextENS_8ArrayRefIjEENS_9AttributeE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm8CallBase12addParamAttrEjNS_9AttributeE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm13IRBuilderBase21CreateMemTransferInstEjPNS_5ValueENS_10MaybeAlignES2_S3_S2_bRKNS_9AAMDNodesE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) CreateMemCpy at /source/usr/include/llvm/IR/IRBuilder.h:705:33 [inlined] CreateMemCpy at /source/usr/include/llvm/IR/IRBuilder.h:691:24 [inlined] emit_memcpy_llvm at /source/src/cgutils.cpp:1189:29 emit_memcpy at /source/src/cgutils.cpp:1198:21 [inlined] split_value_into at /source/src/cgutils.cpp:1328:24 emit_new_struct at /source/src/cgutils.cpp:4599:41 emit_expr at /source/src/codegen.cpp:6763:132 emit_ssaval_assign at /source/src/codegen.cpp:6194:25 emit_stmtpos at /source/src/codegen.cpp:6497:27 [inlined] emit_function at /source/src/codegen.cpp:9788:25 jl_emit_code at /source/src/codegen.cpp:10127:57 jl_emit_codeinst at /source/src/codegen.cpp:10192:83 jl_emit_codeinsts_to_jit_impl at /source/src/jitlayers.cpp:472:49 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1717:157 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1723:5 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1731:17 jfptr_typeinf_ext_toplevel_2.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] jl_type_infer at /source/src/gf.c:463:35 jl_compile_method_internal at /source/src/gf.c:3654:24 _jl_invoke at /source/src/gf.c:4119:16 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 __groebner1 at /home/pkgeval/.julia/packages/Groebner/Q7HGS/src/groebner/groebner.jl:57:32 unknown function (ip: 0x73b8e9ed33b7) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 _groebner1 at /home/pkgeval/.julia/packages/Groebner/Q7HGS/src/groebner/groebner.jl:34:5 unknown function (ip: 0x73b8e9ecfa4d) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 groebner0 at /home/pkgeval/.julia/packages/Groebner/Q7HGS/src/groebner/groebner.jl:10:30 #groebner#201 at /home/pkgeval/.julia/packages/Groebner/Q7HGS/src/interface.jl:109:5 [inlined] groebner at /home/pkgeval/.julia/packages/Groebner/Q7HGS/src/interface.jl:107:4 [inlined] field_contains_algebraic at /home/pkgeval/.julia/packages/RationalFunctionFields/E2pFC/src/Field.jl:343:705 field_contains at /home/pkgeval/.julia/packages/RationalFunctionFields/E2pFC/src/Field.jl:366:133 #check_identifiability#223 at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/global_identifiability.jl:179:178 check_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/global_identifiability.jl:179:54 [inlined] #assess_global_identifiability#238 at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/global_identifiability.jl:287:90 assess_global_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/global_identifiability.jl:287:2 [inlined] macro expansion at ./timing.jl:503:3 [inlined] #_assess_identifiability#392 at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/StructuralIdentifiability.jl:174:377 _assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/StructuralIdentifiability.jl:140:33 [inlined] #388 at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/StructuralIdentifiability.jl:121:13 with_logstate at ./logging/logging.jl:542:15 with_logger at ./logging/logging.jl:653:5 [inlined] #assess_identifiability#385 at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/StructuralIdentifiability.jl:119:20 [inlined] assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/src/StructuralIdentifiability.jl:110:75 unknown function (ip: 0x73b8e9e05cf6) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_body at /source/src/interpreter.c:594:35 eval_body at /source/src/interpreter.c:563:21 eval_body at /source/src/interpreter.c:571:21 eval_body at /source/src/interpreter.c:571:21 eval_body at /source/src/interpreter.c:571:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 _include at ./loading.jl:3173:35 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 unknown function (ip: 0x73b8efbca612) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/test/runtests.jl:157:3 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2246:17 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/test/runtests.jl:155:17 [inlined] macro expansion at ./timing.jl:739:25 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/test/runtests.jl:154:439 jl_invoke_oneshot at /source/src/gf.c:4162:23 ijl_eval_thunk at /source/src/toplevel.c:760:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 _include at ./loading.jl:3173:35 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:706:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:321:353 _start at ./client.jl:596:35 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x73b905d4a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ed8497d9690 Total snapshots: 389. Utilization: 0% ╎389 @Base/task.jl:1168 wait_forever() 388╎ 389 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 19616913 (Pool: 19616206; Big: 707); GC: 16 [31] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/31snG/test/identifiability.jl:1 _ZN4llvm7hashing6detail23hash_combine_range_implIKjEENSt9enable_ifIXsrNS1_16is_hashable_dataIT_EE5valueENS_9hash_codeEE4typeEPS6_SB_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm14FoldingSetBase19FindNodeOrInsertPosERKNS_16FoldingSetNodeIDERPvRKNS0_14FoldingSetInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12SelectionDAG19FindNodeOrInsertPosERKNS_16FoldingSetNodeIDERKNS_5SDLocERPv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12SelectionDAG7getLoadENS_3ISD14MemIndexedModeENS1_11LoadExtTypeENS_3EVTERKNS_5SDLocENS_7SDValueES8_S8_S4_PNS_17MachineMemOperandE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12SelectionDAG7getLoadENS_3EVTERKNS_5SDLocENS_7SDValueES5_PNS_17MachineMemOperandE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner9visitLOADEPN4llvm6SDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN12_GLOBAL__N_111DAGCombiner7combineEPN4llvm6SDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm12SelectionDAG7CombineENS_12CombineLevelEPNS_14BatchAAResultsENS_15CodeGenOptLevelE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel17CodeGenAndEmitDAGEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm22SelectionDAGISelLegacy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1414:23 compileModule at /source/src/jitlayers.cpp:2390:79 materialize at /source/src/jitlayers.cpp:906:36 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2085:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3666:27 _jl_invoke at /source/src/gf.c:4119:16 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 annotatedstring_optimize! at /source/usr/share/julia/stdlib/v1.14/StyledStrings/src/styledmarkup.jl:891:83 |> at ./operators.jl:980:1 [inlined] tree_format at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1064:605 print_tree at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1254:77 tree at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1308:113 print_group at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:389:41 #print#5 at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:331:314 print at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:271:186 [inlined] print at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:271:3 [inlined] print at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:271:3 _peek_report at /source/usr/share/julia/stdlib/v1.14/Profile/src/Profile.jl:94:20 unknown function (ip: 0x73b8e9d8e8cf) at (unknown file) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] jl_f_invokelatest at /source/src/builtins.c:910:23 profile_printing_listener at ./Base.jl:359:42 #start_profile_listener##0 at ./Base.jl:377:3 jfptr_YY.start_profile_listenerYY.YY.0_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4127:23 [inlined] ijl_apply_generic at /source/src/gf.c:4353:12 jl_apply at /source/src/julia.h:2328:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 229250177 (Pool: 229247416; Big: 2761); GC: 82 PkgEval terminated after 2746.15s: test duration exceeded the time limit