Package evaluation to test PrincipalMomentAnalysisApp on Julia 1.14.0-DEV.2186 (48ff18f4cd*) started at 2026-05-17T22:39:51.081 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.44s ################################################################################ # Installation # Installing PrincipalMomentAnalysisApp... Resolving package versions... Installed AbstractTrees ─────────────── v0.4.5 Installed URIs ──────────────────────── v1.6.1 Installed DelimitedFiles ────────────── v1.9.1 Installed Mux ───────────────────────── v1.0.2 Installed MacroTools ────────────────── v0.5.16 Installed InlineStrings ─────────────── v1.4.5 Installed FilePathsBase ─────────────── v0.9.24 Installed DataStructures ────────────── v0.18.22 Installed ConcurrentUtilities ───────── v2.5.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed OrderedCollections ────────── v1.8.1 Installed ExceptionUnwrapping ───────── v0.1.11 Installed CSV ───────────────────────── v0.10.16 Installed NearestNeighbors ──────────── v0.4.27 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed TensorCore ────────────────── v0.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed Statistics ────────────────── v1.11.1 Installed WebSockets ────────────────── v1.6.0 Installed StatsAPI ──────────────────── v1.8.0 Installed DataValueInterfaces ───────── v1.0.0 Installed SentinelArrays ────────────── v1.4.9 Installed MbedTLS ───────────────────── v1.1.10 Installed FunctionalCollections ─────── v0.5.0 Installed Hiccup ────────────────────── v0.2.2 Installed PrecompileTools ───────────── v1.3.4 Installed Colors ────────────────────── v0.12.11 Installed Distances ─────────────────── v0.10.12 Installed OpenSSL ───────────────────── v1.6.1 Installed AssetRegistry ─────────────── v0.1.1 Installed LoggingExtras ─────────────── v1.2.0 Installed StaticArraysCore ──────────── v1.4.4 Installed ColorTypes ────────────────── v0.11.5 Installed StaticArrays ──────────────── v1.9.18 Installed Widgets ───────────────────── v0.6.7 Installed ColorVectorSpace ──────────── v0.10.0 Installed StringManipulation ────────── v0.4.4 Installed Pidfile ───────────────────── v1.3.0 Installed BitFlags ──────────────────── v0.1.9 Installed Parameters ────────────────── v0.12.3 Installed JSON ──────────────────────── v0.21.4 Installed Requires ──────────────────── v1.3.1 Installed Parsers ───────────────────── v2.8.4 Installed HTTP ──────────────────────── v1.11.0 Installed Tables ────────────────────── v1.12.1 Installed PlotlyKaleido ─────────────── v2.3.1 Installed Reexport ──────────────────── v1.2.2 Installed PlotlyBase ────────────────── v0.8.23 Installed DataFrames ────────────────── v1.8.2 Installed PrettyTables ──────────────── v3.3.2 Installed WebIO ─────────────────────── v0.8.21 Installed Blink ─────────────────────── v0.12.9 Installed PrincipalMomentAnalysisApp ── v0.2.6 Installed Preferences ───────────────── v1.5.2 Installed FixedPointNumbers ─────────── v0.8.5 Installed SimpleBufferStream ────────── v1.2.0 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed JSExpr ────────────────────── v0.5.4 Installed WeakRefStrings ────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed PrincipalMomentAnalysis ───── v0.2.2 Installed Mustache ──────────────────── v1.0.21 Installed Crayons ───────────────────── v4.1.1 Installed IterTools ─────────────────── v1.10.0 Installed UnPack ────────────────────── v1.0.2 Installed Lazy ──────────────────────── v0.15.1 Installed DocStringExtensions ───────── v0.9.5 Installed WorkerUtilities ───────────── v1.6.1 Installed PlotlyJS ──────────────────── v0.18.18 Installed ColorSchemes ──────────────── v3.31.0 Installing 9 artifacts Installed artifact mathjax 18.7 KiB Installed artifact web 215.6 KiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact plotly-artifacts 1.7 MiB Installed artifact MbedTLS 2.2 MiB Installed artifact plotly 2.3 MiB Installed artifact testfiles 6.2 MiB Installed artifact electronjs_app 79.1 MiB Installed artifact Kaleido 75.3 MiB Updating `~/.julia/environments/v1.14/Project.toml` [e56c3062] + PrincipalMomentAnalysisApp v0.2.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.16 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [cd3eb016] + HTTP v1.11.0 [9fb69e20] + Hiccup v0.2.2 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [b8a86587] + NearestNeighbors v0.4.27 [510215fc] + Observables v0.5.5 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.18 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [6a3ba550] + PrincipalMomentAnalysis v0.2.2 [e56c3062] + PrincipalMomentAnalysisApp v0.2.6 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.9 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.3 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [f7e6163d] + Kaleido_jll v0.2.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4bf6c08295346efba58bb2d5f8c52984efed7f27/build.log` Installation completed after 79.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.7 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.8 s ✓ MacroTools 1.7 s ✓ InlineStrings 0.9 s ✓ Reexport 1.2 s ✓ Statistics 0.9 s ✓ DataAPI 0.9 s ✓ TensorCore 0.8 s ✓ UnPack 0.9 s ✓ DataValueInterfaces 1.1 s ✓ StaticArraysCore 1.0 s ✓ StatsAPI 1.3 s ✓ URIs 1.4 s ✓ OrderedCollections 1.0 s ✓ InvertedIndices 1.2 s ✓ Observables 1.0 s ✓ BitFlags 1.2 s ✓ IterTools 1.2 s ✓ DocStringExtensions 1.2 s ✓ AbstractTrees 1.1 s ✓ WorkerUtilities 1.4 s ✓ TranscodingStreams 0.9 s ✓ SimpleBufferStream 0.9 s ✓ IteratorInterfaceExtensions 1.0 s ✓ LaTeXStrings 2.3 s ✓ Crayons 1.6 s ✓ Requires 1.7 s ✓ ConcurrentUtilities 1.1 s ✓ DelimitedFiles 2.7 s ✓ SentinelArrays 1.6 s ✓ LoggingExtras 1.2 s ✓ Compat 1.5 s ✓ Preferences 1.2 s ✓ Pidfile 1.9 s ✓ ExceptionUnwrapping 1.3 s ✓ FunctionalCollections 5.9 s ✓ Lazy 1.4 s ✓ Hiccup 4.1 s ✓ FixedPointNumbers 1.6 s ✓ Statistics → SparseArraysExt 1.0 s ✓ Missings 1.1 s ✓ PooledArrays 1.6 s ✓ Distances 1.4 s ✓ Parameters 4.6 s ✓ OpenSSL 1.0 s ✓ CodecZlib 0.8 s ✓ TableTraits 0.9 s ✓ Compat → CompatLinearAlgebraExt 2.2 s ✓ JLLWrappers 1.9 s ✓ PrecompileTools 4.6 s ✓ ColorTypes 1.8 s ✓ Distances → DistancesSparseArraysExt 2.0 s ✓ Tables 2.6 s ✓ FilePathsBase 4.0 s ✓ DataStructures 2.4 s ✓ Kaleido_jll 2.4 s ✓ MbedTLS_jll 15.0 s ✓ StaticArrays 4.1 s ✓ StringManipulation 17.6 s ✓ Parsers 3.8 s ✓ ColorVectorSpace 7.6 s ✓ Colors 1.5 s ✓ Mustache 3.3 s ✓ FilePathsBase → FilePathsBaseTestExt 1.4 s ✓ FilePathsBase → FilePathsBaseMmapExt 1.7 s ✓ SortingAlgorithms 2.6 s ✓ MbedTLS 1.8 s ✓ StaticArrays → StaticArraysStatisticsExt 42.0 s ✓ PrettyTables 4.3 s ✓ JSON 1.4 s ✓ InlineStrings → ParsersExt 2.0 s ✓ Widgets 10.3 s ✓ ColorSchemes 26.0 s ✓ HTTP 8.7 s ✓ NearestNeighbors 89.0 s ✓ DataFrames 1.5 s ✓ AssetRegistry 1.8 s ✓ PlotlyKaleido 3.5 s ✓ WeakRefStrings 15.1 s ✓ PlotlyBase WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. 5.1 s ✓ WebSockets 3.1 s ✓ PrincipalMomentAnalysis 8.9 s ✓ Mux 27.9 s ✓ CSV 15.3 s ✓ PlotlyBase → DataFramesExt 8.7 s ✓ WebIO 9.0 s ✓ JSExpr 12.3 s ✓ Blink 18.8 s ✓ PlotlyJS 14.1 s ✓ PlotlyJS → CSVExt 20.4 s ✓ PlotlyJS → DataFramesExt 26.5 s ✓ PrincipalMomentAnalysisApp 90 dependencies successfully precompiled in 532 seconds. 37 already precompiled. 1 dependency had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ Precompilation completed after 559.43s ################################################################################ # Testing # Testing PrincipalMomentAnalysisApp Status `/tmp/jl_q8aofq/Project.toml` [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.16 ⌅ [5ae59095] Colors v0.12.11 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [c8e1da08] IterTools v1.10.0 [97c1335a] JSExpr v0.5.4 [f0f68f2c] PlotlyJS v0.18.18 [6a3ba550] PrincipalMomentAnalysis v0.2.2 [e56c3062] PrincipalMomentAnalysisApp v0.2.6 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_q8aofq/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.16 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [cd3eb016] HTTP v1.11.0 [9fb69e20] Hiccup v0.2.2 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [b8a86587] NearestNeighbors v0.4.27 [510215fc] Observables v0.5.5 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.18 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [6a3ba550] PrincipalMomentAnalysis v0.2.2 [e56c3062] PrincipalMomentAnalysisApp v0.2.6 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.9 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.3 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [f7e6163d] Kaleido_jll v0.2.1+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: [Processing] Got message: exit Any[] [ Info: [Processing] Exiting thread. [ Info: [Processing] Got message: setvalue Any["samplesimplexmethod", "SA"] [ Info: [Processing] Got message: setvalue Any["loadrowsassamples", "true"] [ Info: [Processing] Got message: setvalue Any["logtransform", "false"] [ Info: [Processing] Got message: setvalue Any["logtransformoffset", "1"] [ Info: [Processing] Got message: setvalue Any["normalizemethod", "Mean=0"] [ Info: [Processing] Got message: setvalue Any["dimreductionmethod", "PMA"] [ Info: [Processing] Got message: setvalue Any["knearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["distnearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["xaxis", "1"] [ Info: [Processing] Got message: setvalue Any["yaxis", "2"] [ Info: [Processing] Got message: setvalue Any["zaxis", "3"] [ Info: [Processing] Got message: setvalue Any["plotwidth", "1024"] [ Info: [Processing] Got message: setvalue Any["plotheight", "768"] [ Info: [Processing] Got message: setvalue Any["showpoints", "true"] [ Info: [Processing] Got message: setvalue Any["showlines", "true"] [ Info: [Processing] Got message: setvalue Any["showtriangles", "false"] [ Info: [Processing] Got message: setvalue Any["markersize", "4"] [ Info: [Processing] Got message: setvalue Any["linewidth", "1"] [ Info: [Processing] Got message: setvalue Any["triangleopacity", "0.05"] [ Info: [Processing] Got message: setvalue Any["colorby", "Auto"] [ Info: [Processing] Got message: setvalue Any["exportmode", "Variables"] [ Info: [Processing] Got message: setvalue Any["exportsingledim", "1"] [ Info: [Processing] Got message: setvalue Any["exportsinglesort", "Abs"] [ Info: [Processing] Got message: setvalue Any["exportmultipledim", "3"] [ Info: [Processing] Got message: exit Any[] [ Info: [Processing] Got message: setvalue Any["samplesimplexmethod", "SA"] [ Info: [Processing] Got message: setvalue Any["loadrowsassamples", "true"] [ Info: [Processing] Got message: setvalue Any["logtransform", "false"] [ Info: [Processing] Got message: setvalue Any["logtransformoffset", "1"] [ Info: [Processing] Got message: setvalue Any["normalizemethod", "Mean=0"] [ Info: [Processing] Got message: setvalue Any["dimreductionmethod", "PMA"] [ Info: [Processing] Got message: setvalue Any["knearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["distnearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["xaxis", "1"] [ Info: [Processing] Got message: setvalue Any["yaxis", "2"] [ Info: [Processing] Got message: setvalue Any["zaxis", "3"] [ Info: [Processing] Got message: setvalue Any["plotwidth", "1024"] [ Info: [Processing] Got message: setvalue Any["plotheight", "768"] [ Info: [Processing] Got message: setvalue Any["showpoints", "true"] [ Info: [Processing] Got message: setvalue Any["showlines", "true"] [ Info: [Processing] Got message: setvalue Any["showtriangles", "false"] [ Info: [Processing] Got message: setvalue Any["markersize", "4"] [ Info: [Processing] Got message: setvalue Any["linewidth", "1"] [ Info: [Processing] Got message: setvalue Any["triangleopacity", "0.05"] [ Info: [Processing] Got message: setvalue Any["colorby", "Auto"] [ Info: [Processing] Got message: setvalue Any["exportmode", "Variables"] [ Info: [Processing] Got message: setvalue Any["exportsingledim", "1"] [ Info: [Processing] Got message: setvalue Any["exportsinglesort", "Abs"] [ Info: [Processing] Got message: setvalue Any["exportmultipledim", "3"] [ Info: [Processing] Got message: setvalue Any["samplefilepath", "/home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/data/data.tsv"] [ Info: [Processing] Got message: setvalue Any["lastsampleannot", "Time"] [ Info: [Processing] Got message: loadsample Any[] [ Info: loadsample waiting for 0 jobs to finish. [ Info: Spawning loadsample (3@133) [ Info: Running loadsample (3@133) with 2 parameter(s) in thread 1. [ Info: Finished running loadsample[30.3s] (3@133) in thread 1. [ Info: [Processing] Got message: setvalue Any["samplesimplexmethod", "SA"] [ Info: [Processing] Got message: setvalue Any["sampleannot", "Group"] [ Info: [Processing] Got message: dimreduction Any[] [ Info: normalizesample waiting for 0 jobs to finish. [ Info: setupsimplices waiting for 1 jobs to finish. [ Info: dimreduction waiting for 2 jobs to finish. [ Info: Spawning normalizesample (8@135) [ Info: Running normalizesample (8@135) with 5 parameter(s) in thread 1. [ Info: Finished running normalizesample[1.4s] (8@135) in thread 1. [ Info: Spawning setupsimplices (14@138) [ Info: Running setupsimplices (14@138) with 6 parameter(s) in thread 1. [ Info: Finished running setupsimplices[1.9s] (14@138) in thread 1. [ Info: Spawning dimreduction (16@138) [ Info: Running dimreduction (16@138) with 3 parameter(s) in thread 1. ┌ Warning: Job dimreduction (16@138) failed └ @ PrincipalMomentAnalysisApp.Schedulers ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/Schedulers.jl:452 MethodError: no method matching eigen!(::Symmetric{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, ::UnitRange{Int64}) The function `eigen!` exists, but no method is defined for this combination of argument types. Closest candidates are: eigen!(::AbstractMatrix, !Matched::Cholesky; sortby) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:269 eigen!(!Matched::SymTridiagonal{<:Union{Float32, Float64}, <:StridedVector{T} where T}, ::UnitRange) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/tridiag.jl:285 eigen!(!Matched::Union{Hermitian{var"#s5308", var"#s5307"}, Hermitian{Complex{var"#s5308"}, var"#s5307"}, Symmetric{var"#s5308", var"#s5307"}} where {var"#s5308"<:Union{Float32, Float64}, var"#s5307"<:(StridedMatrix{T} where T)}, ::UnitRange) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:76 ... Stacktrace: [1] eigen(A::Symmetric{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, irange::UnitRange{Int64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:98 [2] _pma(A::Matrix{Float64}, S::SparseArrays.SparseMatrixCSC{Float64, Int64}; nsv::Int64) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:51 [3] pma(A::Matrix{Float64}, sg::SimplexGraph{SparseArrays.SparseMatrixCSC{Bool, Int64}, Vector{Int64}}; kwargs::@Kwargs{nsv::Int64}) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:71 [4] dimreduction(st::PrincipalMomentAnalysisApp.Schedulers.JobStatus, input::Dict{String, Any}) @ PrincipalMomentAnalysisApp ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/app.jl:148 [5] runjob!(s::Scheduler, jobID::Int64, jobName::String, changedAt::Base.Threads.Atomic{Int64}, runAt::Int64, f::typeof(PrincipalMomentAnalysisApp.dimreduction), input::Dict{String, Any}) @ PrincipalMomentAnalysisApp.Schedulers ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/Schedulers.jl:444 [6] _spawn!(s::Scheduler, jobID::Int64, scheduledAt::Int64) @ PrincipalMomentAnalysisApp.Schedulers ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/Schedulers.jl:323 [7] (::PrincipalMomentAnalysisApp.Schedulers.var"#_schedule!##2#_schedule!##3"{Int64, Int64})(s::Scheduler) @ PrincipalMomentAnalysisApp.Schedulers ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/Schedulers.jl:278 [8] step!(s::Scheduler) @ PrincipalMomentAnalysisApp.Schedulers ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/Schedulers.jl:135 [9] process_step(jg::JobGraph, fromGUI::Channel{Pair{Symbol, Vector}}, toGUI::Channel{Pair{Symbol, Any}}, lastSchedulerTime::Base.RefValue{UInt64}; verbosityLevel::Int64) @ PrincipalMomentAnalysisApp ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/app.jl:409 [10] runall(app::MiniApp) @ Main ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/utils.jl:40 [11] eval_test_function(func::Any, args::Any, kwargs::Any, quoted_func::Union{Expr, Symbol}, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:407 [12] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:3 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [14] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:25 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [16] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:54 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [19] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/runtests.jl:14 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [21] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/runtests.jl:15 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:517 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [26] _start() @ Base ./client.jl:593┌ Warning: [Processing] Error processing event: MethodError(LinearAlgebra.eigen!, ([0.9710083750000004 -0.386920841980862 -0.18214153819583762 -0.22828488537700997 -0.12206005411335019 -0.14125000275673394 -0.3149403939601527 -0.09919525946969693 -0.08472393298913751 -0.046289332141977106 -0.7451529886363635 0.4265659497392615 0.33737463826654657 0.40934255176987105 0.2957088009389806 0.1331766500261454 0.2708212581685626 0.21065038446969697 0.1886956155763329 0.14659857430889392; -0.386920841980862 0.5040415795454548 0.13860433120941001 0.1513928738358972 -0.018199667269204124 0.06040464566196858 0.12537140649082262 0.03747901748397094 0.013989212912422897 0.07427120288849935 0.42814946406848436 -0.2580797840909092 -0.1406202444307469 -0.19783179228701134 -0.1890871646311203 -0.06711014487466468 -0.18382799432879945 -0.10443641234888633 -0.054492917736260575 -0.08940002588254717; -0.18214153819583762 0.13860433120941001 0.3815862443181819 0.20487967032272086 0.00024773211319807946 0.08008221623077062 0.10492268077737647 -0.02118692879838731 0.04107587020752927 0.00563643216272911 0.2518737142554617 -0.17320629620520903 -0.1950258011363636 -0.04521946157150594 -0.1329496069447965 -0.01266707231520048 -0.06424500897258067 -0.04941273621859652 -0.07424017092357064 -0.06768747935374518; -0.22828488537700997 0.1513928738358972 0.20487967032272086 0.4577992011363635 0.016700043023829755 0.03959305803055712 0.11842160513619227 0.04949154813847717 0.10488669002477134 0.0003283664133129204 0.3425486355520072 -0.18988981520318654 -0.17100621468963043 -0.07383220795454531 -0.04212801604327938 -0.028722114946449814 -0.015020793106552289 -0.0541983983976192 -0.06639512133022125 -0.14168868156476983; -0.12206005411335019 -0.018199667269204124 0.00024773211319807946 0.016700043023829755 0.23748067954545443 0.040648268201900144 0.057474956656650804 0.07409857119008642 0.0510482947527502 0.07441474683153143 0.10605807816260812 -0.07595262771316155 -0.038421605294596345 -0.13768613668994156 -0.0050355628787878744 -0.04901511989017781 0.03370800826757142 -0.030131283766440174 -0.02957445393306963 -0.02807678058784876; -0.14125000275673394 0.06040464566196858 0.08008221623077062 0.03959305803055712 0.040648268201900144 0.1895413944805194 -0.0004449266433643334 -0.019116475298418808 0.031194452500080842 -0.022523689040739113 0.1270265755496444 -0.08990959182736959 -0.09448590249061171 -0.049660052781399164 -0.08571448358986905 -0.0032834540043289785 -0.04545744990886725 0.01305706622239623 -0.038846324540012835 -0.024261058307675994; -0.3149403939601527 0.12537140649082262 0.10492268077737647 0.11842160513619227 0.057474956656650804 -0.0004449266433643334 0.403781273133117 0.057480184565438026 0.02648507171862229 0.018422111914162567 0.3036796425801281 -0.18474354236577714 -0.11200044042470647 -0.1396855954280646 -0.10683237040714044 -0.028586028491428803 -0.05299844277597403 -0.0680521608350077 -0.09747586692951603 -0.03500789810638159; -0.09919525946969693 0.03747901748397094 -0.02118692879838731 0.04949154813847717 0.07409857119008642 -0.019116475298418808 0.057480184565438026 0.33949503061868674 0.018798091856032432 0.04110901917792756 0.06920663446969702 -0.03242196055054943 -0.0979332465715818 -0.1741320549213409 -0.08265272290201017 0.04030015636157083 -0.04847743804520421 -0.0780252029671717 -0.006296339127275535 0.0002717222087353383; -0.08472393298913751 0.013989212912422897 0.04107587020752927 0.10488669002477134 0.0510482947527502 0.031194452500080842 0.02648507171862229 0.018798091856032432 0.17972920631313138 0.11790346603886724 0.07209524105288528 -0.12416796637661984 -0.04779153382981996 -0.072193011241343 0.01600950176136377 -0.0422235154606397 0.035820946542489664 -0.07984584933910004 -0.009015026010101025 -0.10729927687374383; -0.046289332141977106 0.07427120288849935 0.00563643216272911 0.0003283664133129204 0.07441474683153143 -0.022523689040739113 0.018422111914162567 0.04110901917792756 0.11790346603886724 0.2785004249999998 0.04627493797491376 -0.09482694202229715 -0.0018058076485838338 -0.11977420633200934 -0.04299645424684377 -0.027947800323102595 -0.006969211928148127 -0.03149977775987934 -0.031182737935087426 -0.024348574999999997; -0.7451529886363635 0.42814946406848436 0.2518737142554617 0.3425486355520072 0.10605807816260812 0.1270265755496444 0.3036796425801281 0.06920663446969702 0.07209524105288528 0.04627493797491376 0.767731102272727 -0.3635024653347686 -0.27684697661764457 -0.25737554001226076 -0.22450504078267283 -0.0749035313591334 -0.22987815784366888 -0.11779166098484846 -0.12106789774124821 -0.12655687096740095; 0.4265659497392615 -0.2580797840909092 -0.17320629620520903 -0.18988981520318654 -0.07595262771316155 -0.08990959182736959 -0.18474354236577714 -0.03242196055054943 -0.12416796637661984 -0.09482694202229715 -0.3635024653347686 0.41901400378787884 0.14869774482389253 0.1492416519971625 0.11277855658993155 0.009249502201289912 0.06645150983514105 0.16074533380349526 0.08842795282652946 0.14968050311470527; 0.33737463826654657 -0.1406202444307469 -0.1950258011363636 -0.17100621468963043 -0.038421605294596345 -0.09448590249061171 -0.11200044042470647 -0.0979332465715818 -0.04779153382981996 -0.0018058076485838338 -0.27684697661764457 0.14869774482389253 0.3163629109848484 0.18536922330837163 0.1606171336193811 0.04212476230117904 0.05919525124001387 0.03638160078730884 0.05000407984792863 0.013448320558183225; 0.40934255176987105 -0.19783179228701134 -0.04521946157150594 -0.07383220795454531 -0.13768613668994156 -0.049660052781399164 -0.1396855954280646 -0.1741320549213409 -0.072193011241343 -0.11977420633200934 -0.25737554001226076 0.1492416519971625 0.18536922330837163 0.5676459284090908 0.14755412323260705 0.039412104020927735 0.058700880352906395 0.13667282414966458 0.09182492785278057 0.008210396896979825; 0.2957088009389806 -0.1890871646311203 -0.1329496069447965 -0.04212801604327938 -0.0050355628787878744 -0.08571448358986905 -0.10683237040714044 -0.08265272290201017 0.01600950176136377 -0.04299645424684377 -0.22450504078267283 0.11277855658993155 0.1606171336193811 0.14755412323260705 0.2768500128787878 0.039086935353861665 0.12437409326304327 0.0537611346484513 0.10717417648963048 -0.003306574611288759; 0.1331766500261454 -0.06711014487466468 -0.01266707231520048 -0.028722114946449814 -0.04901511989017781 -0.0032834540043289785 -0.028586028491428803 0.04030015636157083 -0.0422235154606397 -0.027947800323102595 -0.0749035313591334 0.009249502201289912 0.04212476230117904 0.039412104020927735 0.039086935353861665 0.37951897023809505 0.05699020617554528 -0.0014019850580072792 0.0033004633650050735 -0.041126884205136965; 0.2708212581685626 -0.18382799432879945 -0.06424500897258067 -0.015020793106552289 0.03370800826757142 -0.04545744990886725 -0.05299844277597403 -0.04847743804520421 0.035820946542489664 -0.006969211928148127 -0.22987815784366888 0.06645150983514105 0.05919525124001387 0.058700880352906395 0.12437409326304327 0.05699020617554528 0.2594695685876624 0.004298679073838621 0.06494651160990132 0.058497645459769876; 0.21065038446969697 -0.10443641234888633 -0.04941273621859652 -0.0541983983976192 -0.030131283766440174 0.01305706622239623 -0.0680521608350077 -0.0780252029671717 -0.07984584933910004 -0.03149977775987934 -0.11779166098484846 0.16074533380349526 0.03638160078730884 0.13667282414966458 0.0537611346484513 -0.0014019850580072792 0.004298679073838621 0.29740077556818156 0.014727640667990946 0.15117029267543003; 0.1886956155763329 -0.054492917736260575 -0.07424017092357064 -0.06639512133022125 -0.02957445393306963 -0.038846324540012835 -0.09747586692951603 -0.006296339127275535 -0.009015026010101025 -0.031182737935087426 -0.12106789774124821 0.08842795282652946 0.05000407984792863 0.09182492785278057 0.10717417648963048 0.0033004633650050735 0.06494651160990132 0.014727640667990946 0.2955913477272728 0.028443241034577398; 0.14659857430889392 -0.08940002588254717 -0.06768747935374518 -0.14168868156476983 -0.02807678058784876 -0.024261058307675994 -0.03500789810638159 0.0002717222087353383 -0.10729927687374383 -0.024348574999999997 -0.12655687096740095 0.14968050311470527 0.013448320558183225 0.008210396896979825 -0.003306574611288759 -0.041126884205136965 0.058497645459769876 0.15117029267543003 0.028443241034577398 0.42511242499999974], 11:20), 0x000000000000a119) └ @ PrincipalMomentAnalysisApp ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/app.jl:413 ┌ Warning: [Processing] Error processing event: MethodError(LinearAlgebra.eigen!, ([0.9710083750000004 -0.386920841980862 -0.18214153819583762 -0.22828488537700997 -0.12206005411335019 -0.14125000275673394 -0.3149403939601527 -0.09919525946969693 -0.08472393298913751 -0.046289332141977106 -0.7451529886363635 0.4265659497392615 0.33737463826654657 0.40934255176987105 0.2957088009389806 0.1331766500261454 0.2708212581685626 0.21065038446969697 0.1886956155763329 0.14659857430889392; -0.386920841980862 0.5040415795454548 0.13860433120941001 0.1513928738358972 -0.018199667269204124 0.06040464566196858 0.12537140649082262 0.03747901748397094 0.013989212912422897 0.07427120288849935 0.42814946406848436 -0.2580797840909092 -0.1406202444307469 -0.19783179228701134 -0.1890871646311203 -0.06711014487466468 -0.18382799432879945 -0.10443641234888633 -0.054492917736260575 -0.08940002588254717; -0.18214153819583762 0.13860433120941001 0.3815862443181819 0.20487967032272086 0.00024773211319807946 0.08008221623077062 0.10492268077737647 -0.02118692879838731 0.04107587020752927 0.00563643216272911 0.2518737142554617 -0.17320629620520903 -0.1950258011363636 -0.04521946157150594 -0.1329496069447965 -0.01266707231520048 -0.06424500897258067 -0.04941273621859652 -0.07424017092357064 -0.06768747935374518; -0.22828488537700997 0.1513928738358972 0.20487967032272086 0.4577992011363635 0.016700043023829755 0.03959305803055712 0.11842160513619227 0.04949154813847717 0.10488669002477134 0.0003283664133129204 0.3425486355520072 -0.18988981520318654 -0.17100621468963043 -0.07383220795454531 -0.04212801604327938 -0.028722114946449814 -0.015020793106552289 -0.0541983983976192 -0.06639512133022125 -0.14168868156476983; -0.12206005411335019 -0.018199667269204124 0.00024773211319807946 0.016700043023829755 0.23748067954545443 0.040648268201900144 0.057474956656650804 0.07409857119008642 0.0510482947527502 0.07441474683153143 0.10605807816260812 -0.07595262771316155 -0.038421605294596345 -0.13768613668994156 -0.0050355628787878744 -0.04901511989017781 0.03370800826757142 -0.030131283766440174 -0.02957445393306963 -0.02807678058784876; -0.14125000275673394 0.06040464566196858 0.08008221623077062 0.03959305803055712 0.040648268201900144 0.1895413944805194 -0.0004449266433643334 -0.019116475298418808 0.031194452500080842 -0.022523689040739113 0.1270265755496444 -0.08990959182736959 -0.09448590249061171 -0.049660052781399164 -0.08571448358986905 -0.0032834540043289785 -0.04545744990886725 0.01305706622239623 -0.038846324540012835 -0.024261058307675994; -0.3149403939601527 0.12537140649082262 0.10492268077737647 0.11842160513619227 0.057474956656650804 -0.0004449266433643334 0.403781273133117 0.057480184565438026 0.02648507171862229 0.018422111914162567 0.3036796425801281 -0.18474354236577714 -0.11200044042470647 -0.1396855954280646 -0.10683237040714044 -0.028586028491428803 -0.05299844277597403 -0.0680521608350077 -0.09747586692951603 -0.03500789810638159; -0.09919525946969693 0.03747901748397094 -0.02118692879838731 0.04949154813847717 0.07409857119008642 -0.019116475298418808 0.057480184565438026 0.33949503061868674 0.018798091856032432 0.04110901917792756 0.06920663446969702 -0.03242196055054943 -0.0979332465715818 -0.1741320549213409 -0.08265272290201017 0.04030015636157083 -0.04847743804520421 -0.0780252029671717 -0.006296339127275535 0.0002717222087353383; -0.08472393298913751 0.013989212912422897 0.04107587020752927 0.10488669002477134 0.0510482947527502 0.031194452500080842 0.02648507171862229 0.018798091856032432 0.17972920631313138 0.11790346603886724 0.07209524105288528 -0.12416796637661984 -0.04779153382981996 -0.072193011241343 0.01600950176136377 -0.0422235154606397 0.035820946542489664 -0.07984584933910004 -0.009015026010101025 -0.10729927687374383; -0.046289332141977106 0.07427120288849935 0.00563643216272911 0.0003283664133129204 0.07441474683153143 -0.022523689040739113 0.018422111914162567 0.04110901917792756 0.11790346603886724 0.2785004249999998 0.04627493797491376 -0.09482694202229715 -0.0018058076485838338 -0.11977420633200934 -0.04299645424684377 -0.027947800323102595 -0.006969211928148127 -0.03149977775987934 -0.031182737935087426 -0.024348574999999997; -0.7451529886363635 0.42814946406848436 0.2518737142554617 0.3425486355520072 0.10605807816260812 0.1270265755496444 0.3036796425801281 0.06920663446969702 0.07209524105288528 0.04627493797491376 0.767731102272727 -0.3635024653347686 -0.27684697661764457 -0.25737554001226076 -0.22450504078267283 -0.0749035313591334 -0.22987815784366888 -0.11779166098484846 -0.12106789774124821 -0.12655687096740095; 0.4265659497392615 -0.2580797840909092 -0.17320629620520903 -0.18988981520318654 -0.07595262771316155 -0.08990959182736959 -0.18474354236577714 -0.03242196055054943 -0.12416796637661984 -0.09482694202229715 -0.3635024653347686 0.41901400378787884 0.14869774482389253 0.1492416519971625 0.11277855658993155 0.009249502201289912 0.06645150983514105 0.16074533380349526 0.08842795282652946 0.14968050311470527; 0.33737463826654657 -0.1406202444307469 -0.1950258011363636 -0.17100621468963043 -0.038421605294596345 -0.09448590249061171 -0.11200044042470647 -0.0979332465715818 -0.04779153382981996 -0.0018058076485838338 -0.27684697661764457 0.14869774482389253 0.3163629109848484 0.18536922330837163 0.1606171336193811 0.04212476230117904 0.05919525124001387 0.03638160078730884 0.05000407984792863 0.013448320558183225; 0.40934255176987105 -0.19783179228701134 -0.04521946157150594 -0.07383220795454531 -0.13768613668994156 -0.049660052781399164 -0.1396855954280646 -0.1741320549213409 -0.072193011241343 -0.11977420633200934 -0.25737554001226076 0.1492416519971625 0.18536922330837163 0.5676459284090908 0.14755412323260705 0.039412104020927735 0.058700880352906395 0.13667282414966458 0.09182492785278057 0.008210396896979825; 0.2957088009389806 -0.1890871646311203 -0.1329496069447965 -0.04212801604327938 -0.0050355628787878744 -0.08571448358986905 -0.10683237040714044 -0.08265272290201017 0.01600950176136377 -0.04299645424684377 -0.22450504078267283 0.11277855658993155 0.1606171336193811 0.14755412323260705 0.2768500128787878 0.039086935353861665 0.12437409326304327 0.0537611346484513 0.10717417648963048 -0.003306574611288759; 0.1331766500261454 -0.06711014487466468 -0.01266707231520048 -0.028722114946449814 -0.04901511989017781 -0.0032834540043289785 -0.028586028491428803 0.04030015636157083 -0.0422235154606397 -0.027947800323102595 -0.0749035313591334 0.009249502201289912 0.04212476230117904 0.039412104020927735 0.039086935353861665 0.37951897023809505 0.05699020617554528 -0.0014019850580072792 0.0033004633650050735 -0.041126884205136965; 0.2708212581685626 -0.18382799432879945 -0.06424500897258067 -0.015020793106552289 0.03370800826757142 -0.04545744990886725 -0.05299844277597403 -0.04847743804520421 0.035820946542489664 -0.006969211928148127 -0.22987815784366888 0.06645150983514105 0.05919525124001387 0.058700880352906395 0.12437409326304327 0.05699020617554528 0.2594695685876624 0.004298679073838621 0.06494651160990132 0.058497645459769876; 0.21065038446969697 -0.10443641234888633 -0.04941273621859652 -0.0541983983976192 -0.030131283766440174 0.01305706622239623 -0.0680521608350077 -0.0780252029671717 -0.07984584933910004 -0.03149977775987934 -0.11779166098484846 0.16074533380349526 0.03638160078730884 0.13667282414966458 0.0537611346484513 -0.0014019850580072792 0.004298679073838621 0.29740077556818156 0.014727640667990946 0.15117029267543003; 0.1886956155763329 -0.054492917736260575 -0.07424017092357064 -0.06639512133022125 -0.02957445393306963 -0.038846324540012835 -0.09747586692951603 -0.006296339127275535 -0.009015026010101025 -0.031182737935087426 -0.12106789774124821 0.08842795282652946 0.05000407984792863 0.09182492785278057 0.10717417648963048 0.0033004633650050735 0.06494651160990132 0.014727640667990946 0.2955913477272728 0.028443241034577398; 0.14659857430889392 -0.08940002588254717 -0.06768747935374518 -0.14168868156476983 -0.02807678058784876 -0.024261058307675994 -0.03500789810638159 0.0002717222087353383 -0.10729927687374383 -0.024348574999999997 -0.12655687096740095 0.14968050311470527 0.013448320558183225 0.008210396896979825 -0.003306574611288759 -0.041126884205136965 0.058497645459769876 0.15117029267543003 0.028443241034577398 0.42511242499999974], 11:20), 0x000000000000a119) └ @ PrincipalMomentAnalysisApp ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/src/app.jl:413 data.tsv: Error During Test at /home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:56 Test threw exception Expression: reduced.sa == dfSample[!, 1:3] FieldError: type MethodError has no field `sa`, available fields: `f`, `args`, `world` Stacktrace: [1] getproperty(x::MethodError, f::Symbol) @ Base ./Base_compiler.jl:58 [2] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [4] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:25 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:56 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] data.tsv: Error During Test at /home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:57 Test threw exception Expression: reduced.va[!, 1] == varIds FieldError: type MethodError has no field `va`, available fields: `f`, `args`, `world` Stacktrace: [1] getproperty(x::MethodError, f::Symbol) @ Base ./Base_compiler.jl:58 [2] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [4] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:25 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:57 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:781 [inlined] data.tsv: Error During Test at /home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:24 Got exception outside of a @test MethodError: no method matching eigen!(::Symmetric{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, ::UnitRange{Int64}) The function `eigen!` exists, but no method is defined for this combination of argument types. Closest candidates are: eigen!(::AbstractMatrix, !Matched::Cholesky; sortby) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:269 eigen!(!Matched::SymTridiagonal{<:Union{Float32, Float64}, <:StridedVector{T} where T}, ::UnitRange) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/tridiag.jl:285 eigen!(!Matched::Union{Hermitian{var"#s5308", var"#s5307"}, Hermitian{Complex{var"#s5308"}, var"#s5307"}, Symmetric{var"#s5308", var"#s5307"}} where {var"#s5308"<:Union{Float32, Float64}, var"#s5307"<:(StridedMatrix{T} where T)}, ::UnitRange) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:76 ... Stacktrace: [1] eigen(A::Symmetric{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, irange::UnitRange{Int64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:98 [2] _pma(A::Matrix{Float64}, S::SparseArrays.SparseMatrixCSC{Float64, Int64}; nsv::Int64) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:51 [3] pma(A::Matrix{Float64}, sg::SimplexGraph{SparseArrays.SparseMatrixCSC{Bool, Int64}, Vector{Int64}}; kwargs::@Kwargs{nsv::Int64}) @ PrincipalMomentAnalysis ~/.julia/packages/PrincipalMomentAnalysis/eI8Bo/src/pma.jl:71 [4] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:3 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:25 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [8] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/test_app.jl:58 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [10] top-level scope @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/runtests.jl:14 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [12] macro expansion @ ~/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/runtests.jl:15 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:517 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [17] _start() @ Base ./client.jl:593 [ Info: [Processing] Got message: setvalue Any["samplesimplexmethod", "SA"] [ Info: [Processing] Got message: setvalue Any["loadrowsassamples", "true"] [ Info: [Processing] Got message: setvalue Any["logtransform", "false"] [ Info: [Processing] Got message: setvalue Any["logtransformoffset", "1"] [ Info: [Processing] Got message: setvalue Any["normalizemethod", "Mean=0"] [ Info: [Processing] Got message: setvalue Any["dimreductionmethod", "PMA"] [ Info: [Processing] Got message: setvalue Any["knearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["distnearestneighbors", "0"] [ Info: [Processing] Got message: setvalue Any["xaxis", "1"] [ Info: [Processing] Got message: setvalue Any["yaxis", "2"] [ Info: [Processing] Got message: setvalue Any["zaxis", "3"] [ Info: [Processing] Got message: setvalue Any["plotwidth", "1024"] [ Info: [Processing] Got message: setvalue Any["plotheight", "768"] [ Info: [Processing] Got message: setvalue Any["showpoints", "true"] [ Info: [Processing] Got message: setvalue Any["showlines", "true"] [ Info: [Processing] Got message: setvalue Any["showtriangles", "false"] [ Info: [Processing] Got message: setvalue Any["markersize", "4"] [ Info: [Processing] Got message: setvalue Any["linewidth", "1"] [ Info: [Processing] Got message: setvalue Any["triangleopacity", "0.05"] [ Info: [Processing] Got message: setvalue Any["colorby", "Auto"] [ Info: [Processing] Got message: setvalue Any["exportmode", "Variables"] [ Info: [Processing] Got message: setvalue Any["exportsingledim", "1"] [ Info: [Processing] Got message: setvalue Any["exportsinglesort", "Abs"] [ Info: [Processing] Got message: setvalue Any["exportmultipledim", "3"] [ Info: [Processing] Got message: setvalue Any["samplefilepath", "/home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/data/data_missing.tsv"] [ Info: [Processing] Got message: setvalue Any["lastsampleannot", "Time"] [ Info: [Processing] Got message: setvalue Any["normalizemethod", "None"] [ Info: [Processing] Got message: normalize Any[] [ Info: loadsample waiting for 0 jobs to finish. [ Info: normalizesample waiting for 1 jobs to finish. [ Info: Spawning loadsample (3@133) [ Info: Running loadsample (3@133) with 2 parameter(s) in thread 1. [ Info: Finished running loadsample[0.2s] (3@133) in thread 1. [ Info: Spawning normalizesample (8@137) [ Info: Running normalizesample (8@137) with 5 parameter(s) in thread 1. [ Info: Reconstructing missing values (taking the mean over all nonmissing samples) [ Info: Finished running normalizesample[3.0s] (8@137) in thread 1. [ Info: [Processing] Got message: setvalue Any["logtransform", "true"] [ Info: [Processing] Got message: setvalue Any["logtransformoffset", "0.57"] [ Info: [Processing] Got message: normalize Any[] [ Info: normalizesample waiting for 0 jobs to finish. [ Info: Spawning normalizesample (8@141) [ Info: Running normalizesample (8@141) with 5 parameter(s) in thread 1. [ Info: Reconstructing missing values (taking the mean over all nonmissing samples) [ Info: Finished running normalizesample[0.5s] (8@141) in thread 1. Test Summary: | Pass Error Total Time PrincipalMomentAnalysisApp | 15 3 18 2m00.4s content | 1 1 1.6s app | 14 3 17 1m57.2s exit | 2 2 6.3s exit2 | 1 1 1.7s data.tsv | 7 3 10 1m43.3s MissingValueReconstruction | 4 4 5.9s RNG of the outermost testset: Random.Xoshiro(0xe0560630edc2ec7a, 0x086e987360495e01, 0x9dafda8a22c43f01, 0xae51ef2ca9a709f5, 0xd24e9e7660058735) ERROR: LoadError: Some tests did not pass: 15 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PrincipalMomentAnalysisApp/ZYABW/test/runtests.jl:13 Testing failed after 167.34s ERROR: LoadError: Package PrincipalMomentAnalysisApp errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 855.67s: package tests unexpectedly errored