Package evaluation to test MDSh5 on Julia 1.14.0-DEV.2207 (8c4818189c*) started at 2026-05-17T15:30:12.861 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.72s ################################################################################ # Installation # Installing MDSh5... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [d26121ab] + MDSh5 v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [992eb4ea] + CondaPkg v0.2.36 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.0 [d26121ab] + MDSh5 v0.1.0 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.15 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [6099a3de] + PythonCall v0.9.32 [6c6a2e73] + Scratch v1.3.0 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v2.3.1+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 4.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7"` in "/tmp/jl_h9KTJO/Project.toml". │ SHA is a non-upgradable standard library with version 1.13.0 in the current Julia version. │ Fix by setting compat to "0.7, 1" to mark support of the current version 1.13.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:520 Precompiling package dependencies... Precompiling project...  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MDSh5/57Boc/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml  CondaPkg Resolving changes  + mdsh5 (pip)  + openssl  + python  + uv  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_h9KTJO/.CondaPkg ✔ Created /tmp/jl_h9KTJO/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_h9KTJO/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=3, <3.6"  │ uv = ">=0.4"  │  │ [dependencies.python]  │ version = ">=3.10,!=3.14.0,!=3.14.1,<4"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [pypi-dependencies]  │ mdsh5 = "*"  │  │ [project]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_h9KTJO/.CondaPkg/pixi.toml ✔ The default environment has been installed. 55.0 s ✓ MDSh5 1 dependency successfully precompiled in 56 seconds. 53 already precompiled. 1 dependency had output during precompilation: ┌ MDSh5 │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MDSh5/57Boc/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml │ CondaPkg Resolving changes │ + mdsh5 (pip) │ + openssl │ + python │ + uv │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_h9KTJO/.CondaPkg │ ✔ Created /tmp/jl_h9KTJO/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_h9KTJO/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ uv = ">=0.4" │ │ │ │ [dependencies.python] │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [pypi-dependencies] │ │ mdsh5 = "*" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_h9KTJO/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 63.84s ################################################################################ # Testing # Testing MDSh5 ┌ Warning: Ignoring incompatible compat entry `SHA = "0.7"` in "/tmp/jl_GrQaX4/Project.toml". │ SHA is a non-upgradable standard library with version 1.13.0 in the current Julia version. │ Fix by setting compat to "0.7, 1" to mark support of the current version 1.13.0. └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:520 Status `/tmp/jl_GrQaX4/Project.toml` [d26121ab] MDSh5 v0.1.0 [6099a3de] PythonCall v0.9.32 [ea8e919c] SHA v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GrQaX4/Manifest.toml` [992eb4ea] CondaPkg v0.2.36 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.0 [d26121ab] MDSh5 v0.1.0 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.15 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [6099a3de] PythonCall v0.9.32 [6c6a2e73] Scratch v1.3.0 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v2.3.1+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MDSh5/57Boc/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml CondaPkg Resolving changes + mdsh5 (pip) + openssl + python + uv CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_GrQaX4/.CondaPkg ✔ Created /tmp/jl_GrQaX4/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_GrQaX4/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ uv = ">=0.4" │ │ [dependencies.python] │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [pypi-dependencies] │ mdsh5 = "*" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_GrQaX4/.CondaPkg/pixi.toml ✔ The default environment has been installed. Traceback (most recent call last): File "/tmp/jl_GrQaX4/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/mdsh5/read_mds.py", line 173, in read_mds conn = mdsthin.Connection(ps_arg, sshp_host=s_host, ssh_port=ps_port) File "/tmp/jl_GrQaX4/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/mdsthin/connection.py", line 149, in __init__ self.connect() ~~~~~~~~~~~~^^ File "/tmp/jl_GrQaX4/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/mdsthin/connection.py", line 221, in connect raise Exception('Unable to find ssh command') Exception: Unable to find ssh command read_mds: Error During Test at /home/pkgeval/.julia/packages/MDSh5/57Boc/test/runtests.jl:19 Got exception outside of a @test Python: TypeError: 'NoneType' object is not iterable Python stacktrace: [1] search_shots @ mdsh5.read_mds /tmp/jl_GrQaX4/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/mdsh5/read_mds.py:407 [2] read_mds @ mdsh5.read_mds /tmp/jl_GrQaX4/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/mdsh5/read_mds.py:107 Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/err.jl:77 [2] errcheck(val::Ptr{PythonCall.C.PyObject}) @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/err.jl:10 [inlined] [3] pycallargs(f::PythonCall.Py, args::PythonCall.Py, kwargs::PythonCall.Py) @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/builtins.jl:195 [4] pycall(::PythonCall.Py; kwargs::@Kwargs{shot_numbers::Nothing, trees::Nothing, point_names::Nothing, server::Nothing, proxy_server::Nothing, resample::Nothing, rescale::Nothing, out_filename::String, reread_data::Bool, force_full_data_read::Bool, config::String, leave_shots_tqdm::Bool}) @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/builtins.jl:207 [5] pycall @ ~/.julia/packages/PythonCall/1cbNR/src/Core/builtins.jl:203 [inlined] [6] incref(x::Ptr{PythonCall.C.PyObject}) @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/Py.jl:363 [inlined] [7] pycopy!(dst::PythonCall.Py, src::PythonCall.Py) @ PythonCall.Core ~/.julia/packages/PythonCall/1cbNR/src/Core/Py.jl:363 [inlined] [8] read_mds(; shot_numbers::Nothing, trees::Nothing, point_names::Nothing, server::Nothing, proxy_server::Nothing, resample::Nothing, rescale::Nothing, out_filename::String, reread_data::Bool, force_full_data_read::Bool, config::String, leave_shots_tqdm::Bool) @ MDSh5 ~/.julia/packages/MDSh5/57Boc/src/MDSh5.jl:124 [9] top-level scope @ ~/.julia/packages/MDSh5/57Boc/test/runtests.jl:20 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [11] macro expansion @ ~/.julia/packages/MDSh5/57Boc/test/runtests.jl:20 [inlined] [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:517 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [16] _start() @ Base ./client.jl:596 Test Summary: | Error Total Time read_mds | 1 1 7.7s RNG of the outermost testset: Random.Xoshiro(0x102dd5a3f4ac64d0, 0xc13c1401aa7ecdad, 0x38ad8d6cdc8655fc, 0xf1b7c2d089ddffd1, 0x0b4c287d07da7a7a) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MDSh5/57Boc/test/runtests.jl:19 Searching... Testing failed after 49.59s ERROR: LoadError: Package MDSh5 errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 177.62s: package tests unexpectedly errored