Package evaluation to test AllenSDK on Julia 1.14.0-DEV.2207 (8c4818189c*) started at 2026-05-17T15:26:13.822 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.16s ################################################################################ # Installation # Installing AllenSDK... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [9d22b198] + AllenSDK v0.4.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [9d22b198] + AllenSDK v0.4.0 [992eb4ea] + CondaPkg v0.2.36 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.0 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.15 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [6099a3de] + PythonCall v0.9.32 [6c6a2e73] + Scratch v1.3.0 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v2.3.1+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 5.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project...  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/mNsl5/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml  CondaPkg Resolving changes  + allensdk (pip)  + argschema (pip)  + h5py (pip)  + hdf5  + hdmf (pip)  + numpy  + openssl  + pandas  + pynwb (pip)  + python  + scipy  + setuptools  + urllib3  + uv  + xarray  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_uQfuGR/.CondaPkg ✔ Created /tmp/jl_uQfuGR/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_uQfuGR/.CondaPkg/pixi.toml  │ [dependencies]  │ hdf5 = "=1.14.6"  │ numpy = "<1.24"  │ openssl = ">=3, <3.6"  │ uv = ">=0.4"  │ setuptools = "<81"  │ xarray = "<2023.2.0"  │ pandas = "==1.5.3"  │ urllib3 = "<2"  │ scipy = "<1.11"  │  │ [dependencies.python]  │ version = ">=3.9,<3.13, >=3.10,!=3.14.0,!=3.14.1,<4"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [pypi-dependencies]  │ allensdk = "==2.16.2"  │ pynwb = "<3"  │ h5py = "!=3.12.0"  │ hdmf = ">3.8,<4"  │ argschema = ">=3.0.1"  │  │ [project]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_uQfuGR/.CondaPkg/pixi.toml ✔ The default environment has been installed. 89.9 s ✓ AllenSDK 1 dependency successfully precompiled in 95 seconds. 53 already precompiled. 1 dependency had output during precompilation: ┌ AllenSDK │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/mNsl5/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml │ CondaPkg Resolving changes │ + allensdk (pip) │ + argschema (pip) │ + h5py (pip) │ + hdf5 │ + hdmf (pip) │ + numpy │ + openssl │ + pandas │ + pynwb (pip) │ + python │ + scipy │ + setuptools │ + urllib3 │ + uv │ + xarray │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_uQfuGR/.CondaPkg │ ✔ Created /tmp/jl_uQfuGR/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_uQfuGR/.CondaPkg/pixi.toml │ │ [dependencies] │ │ hdf5 = "=1.14.6" │ │ numpy = "<1.24" │ │ openssl = ">=3, <3.6" │ │ uv = ">=0.4" │ │ setuptools = "<81" │ │ xarray = "<2023.2.0" │ │ pandas = "==1.5.3" │ │ urllib3 = "<2" │ │ scipy = "<1.11" │ │ │ │ [dependencies.python] │ │ version = ">=3.9,<3.13, >=3.10,!=3.14.0,!=3.14.1,<4" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [pypi-dependencies] │ │ allensdk = "==2.16.2" │ │ pynwb = "<3" │ │ h5py = "!=3.12.0" │ │ hdmf = ">3.8,<4" │ │ argschema = ">=3.0.1" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_uQfuGR/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 87.91s ################################################################################ # Testing # Testing AllenSDK Status `/tmp/jl_IwwuYF/Project.toml` [9d22b198] AllenSDK v0.4.0 [6099a3de] PythonCall v0.9.32 [6c6a2e73] Scratch v1.3.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_IwwuYF/Manifest.toml` [9d22b198] AllenSDK v0.4.0 [992eb4ea] CondaPkg v0.2.36 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.0 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.15 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [6099a3de] PythonCall v0.9.32 [6c6a2e73] Scratch v1.3.0 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v2.3.1+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/mNsl5/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/1cbNR/CondaPkg.toml CondaPkg Resolving changes + allensdk (pip) + argschema (pip) + h5py (pip) + hdf5 + hdmf (pip) + numpy + openssl + pandas + pynwb (pip) + python + scipy + setuptools + urllib3 + uv + xarray CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_IwwuYF/.CondaPkg ✔ Created /tmp/jl_IwwuYF/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_IwwuYF/.CondaPkg/pixi.toml │ [dependencies] │ hdf5 = "=1.14.6" │ numpy = "<1.24" │ openssl = ">=3, <3.6" │ uv = ">=0.4" │ setuptools = "<81" │ xarray = "<2023.2.0" │ pandas = "==1.5.3" │ urllib3 = "<2" │ scipy = "<1.11" │ │ [dependencies.python] │ version = ">=3.9,<3.13, >=3.10,!=3.14.0,!=3.14.1,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [pypi-dependencies] │ allensdk = "==2.16.2" │ pynwb = "<3" │ h5py = "!=3.12.0" │ hdmf = ">3.8,<4" │ argschema = ">=3.0.1" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_IwwuYF/.CondaPkg/pixi.toml ✔ The default environment has been installed. HDF5 version: Test Failed at /home/pkgeval/.julia/packages/AllenSDK/mNsl5/test/runtests.jl:7 Expression: string(AllenSDK.h5py.h5.get_libversion()) == "(1, 14, 6)" Evaluated: "(2, 0, 0)" == "(1, 14, 6)" Stacktrace: [1] top-level scope @ ~/.julia/packages/AllenSDK/mNsl5/test/runtests.jl:7 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/AllenSDK/mNsl5/test/runtests.jl:7 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Test Summary: | Fail Total Time HDF5 version | 1 1 4.0s RNG of the outermost testset: Random.Xoshiro(0x33b9cf7f631f9917, 0x04f112821a201575, 0xc49416c29936b6af, 0x6e34e7d3b0b3ab1e, 0x1ce3cf9c847b18b3) ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AllenSDK/mNsl5/test/runtests.jl:6 Testing failed after 68.47s ERROR: LoadError: Package AllenSDK errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 246.28s: package has test failures