Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.2172 (32456e37ae*) started at 2026-05-15T01:49:15.496 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.13s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed DiffResults ─────────── v1.1.0 Installed DataStructures ──────── v0.19.4 Installed HiGHS_jll ───────────── v1.14.0+0 Installed SnoopPrecompile ─────── v1.0.3 Installed s2n_tls_jll ─────────── v1.7.3+0 Installed MacroTools ──────────── v0.5.16 Installed ForwardDiff ─────────── v1.3.3 Installed SBML ────────────────── v1.6.0 Installed JLD2 ────────────────── v0.5.15 Installed HiGHS ───────────────── v1.23.0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed libaec_jll ──────────── v1.1.6+0 Installed MPICH_jll ───────────── v5.0.1+0 Installed Clp ─────────────────── v1.2.2 Installed ConstructionBase ────── v1.6.0 Installed DelimitedFiles ──────── v1.9.1 Installed Cgl_jll ─────────────── v0.6000.600+0 Installed SBMLFBCModels ───────── v1.1.1 Installed aws_c_cal_jll ───────── v0.9.13+0 Installed aws_c_common_jll ────── v0.12.6+0 Installed CodecZlib ───────────── v0.7.8 Installed ExprTools ───────────── v0.1.10 Installed MicrosoftMPI_jll ────── v10.1.4+3 (no artifacts on this platform) Installed Cbc_jll ─────────────── v200.1000.800+0 Installed OrderedCollections ──── v1.8.1 Installed Clp_jll ─────────────── v100.1700.700+1 Installed TranscodingStreams ──── v0.11.3 Installed HashArrayMappedTries ── v0.2.0 Installed Statistics ──────────── v1.11.1 Installed Compat ──────────────── v4.18.1 Installed MUMPS_seq_jll ───────── v500.900.0+0 Installed CDDLib ──────────────── v0.10.2 Installed MPIABI_jll ──────────── v0.1.5+0 Installed Clarabel ────────────── v0.7.1 Installed PrecompileTools ─────── v1.3.4 Installed ConstraintTrees ─────── v1.11.1 Installed dlfcn_win32_jll ─────── v1.4.2+0 (no artifacts on this platform) Installed Xorg_libpciaccess_jll ─ v0.19.0+0 Installed CEnum ───────────────── v0.5.0 Installed Colors ──────────────── v0.13.1 Installed CoinUtils_jll ───────── v200.1100.600+0 Installed TimerOutputs ────────── v0.5.29 Installed CommonSubexpressions ── v0.3.1 Installed ASL_jll ─────────────── v0.1.3+0 Installed FileIO ──────────────── v1.19.0 Installed StaticArraysCore ────── v1.4.4 Installed mpif_jll ────────────── v0.1.7+0 Installed IrrationalConstants ─── v0.2.6 Installed StaticArrays ────────── v1.9.18 Installed AbstractFBCModels ───── v1.3.0 Installed JuMP ────────────────── v1.30.1 Installed CodecBzip2 ──────────── v0.8.5 Installed aws_c_s3_jll ────────── v0.11.5+0 Installed ColorTypes ──────────── v0.12.1 Installed GenericLinearAlgebra ── v0.3.19 Installed QDLDL ───────────────── v0.4.1 Installed Requires ────────────── v1.3.1 Installed NaNMath ─────────────── v1.1.3 Installed SCS ─────────────────── v2.6.3 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed LogExpFunctions ─────── v0.3.29 Installed AMD ─────────────────── v0.5.3 Installed StableRNGs ──────────── v1.0.4 Installed aws_c_io_jll ────────── v0.26.3+0 Installed DiffRules ───────────── v1.15.1 Installed SBML_jll ────────────── v5.21.0+0 Installed HDF5_jll ────────────── v2.1.2+0 Installed OpenBLAS32_jll ──────── v0.3.33+1 Installed JSON ────────────────── v0.21.4 Installed ECOS_jll ────────────── v200.0.800+0 Installed Cbc ─────────────────── v1.2.0 Installed OpenMPI_jll ─────────── v5.0.11+0 Installed Hwloc_jll ───────────── v2.13.0+1 Installed Parsers ─────────────── v2.8.4 Installed ECOS ────────────────── v1.1.3 Installed aws_c_sdkutils_jll ──── v0.2.4+1 Installed IfElse ──────────────── v0.1.1 Installed COBREXA ─────────────── v2.9.1 Installed ScopedValues ────────── v1.6.2 Installed GLPK_jll ────────────── v5.0.1+1 Installed aws_checksums_jll ───── v0.2.10+0 Installed Unitful ─────────────── v1.28.0 Installed PikaParser ──────────── v0.6.1 Installed Reexport ────────────── v1.2.2 Installed XML2_jll ────────────── v2.13.9+0 Installed JSONFBCModels ───────── v1.0.1 Installed MathOptIIS ──────────── v0.2.0 Installed SpecialFunctions ────── v2.7.2 Installed FixedPointNumbers ───── v0.8.5 Installed MutableArithmetics ──── v1.7.1 Installed Preferences ─────────── v1.5.2 Installed MPIPreferences ──────── v0.1.12 Installed Libiconv_jll ────────── v1.18.0+0 Installed JLLWrappers ─────────── v1.8.0 Installed cddlib_jll ──────────── v0.94.14+0 Installed aws_c_http_jll ──────── v0.10.13+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed Polyhedra ───────────── v0.8.1 Installed aws_c_compression_jll ─ v0.3.2+0 Installed METIS_jll ───────────── v5.1.3+0 Installed SCS_jll ─────────────── v300.200.1100+0 Installed MPItrampoline_jll ───── v5.5.6+0 Installed GLPK ────────────────── v1.2.1 Installed aws_c_auth_jll ──────── v0.9.6+0 Installed Osi_jll ─────────────── v0.10800.700+0 Installed DocStringExtensions ─── v0.9.5 Installed HDF5 ────────────────── v0.17.3 Installed MathOptInterface ────── v1.51.0 Installed sparseQFCA ──────────── v2.3.0 Installing 35 artifacts Installed artifact aws_c_sdkutils 54.9 KiB Installed artifact aws_c_compression 13.4 KiB Installed artifact aws_checksums 87.0 KiB Installed artifact SCS 543.6 KiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact aws_c_cal 1.2 MiB Installed artifact aws_c_io 181.7 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Bzip2 503.5 KiB Installed artifact aws_c_s3 143.0 KiB Installed artifact Libiconv 1.9 MiB Installed artifact aws_c_auth 130.3 KiB Installed artifact ASL 276.3 KiB Installed artifact ECOS 75.2 KiB Installed artifact CoinUtils 762.1 KiB Installed artifact Cbc 1.1 MiB Installed artifact aws_c_http 387.4 KiB Installed artifact cddlib 1.0 MiB Installed artifact GLPK 3.1 MiB Installed artifact XML2 2.5 MiB Installed artifact HDF5 6.1 MiB Installed artifact s2n_tls 1.8 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact HiGHS 2.5 MiB Installed artifact Cgl 609.9 KiB Installed artifact libaec 50.0 KiB Installed artifact aws_c_common 285.2 KiB Installed artifact Osi 430.1 KiB Installed artifact METIS 1.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact MPICH 8.8 MiB Installed artifact Clp 1.4 MiB Installed artifact OpenBLAS32 10.2 MiB Installed artifact MUMPS_seq 9.1 MiB Installed artifact SBML 6.0 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 ⌃ [9961bab8] + Cbc v1.2.0 ⌅ [61c947e1] + Clarabel v0.7.1 ⌃ [e2554f3b] + Clp v1.2.2 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.1 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.4 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.19.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.3 [60bf3e95] + GLPK v1.2.1 ⌅ [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.23.0 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.30.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.2.0 [b8f27783] + MathOptInterface v1.51.0 [d8a4904e] + MutableArithmetics v1.7.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.4 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.3 [7e506255] + ScopedValues v1.6.2 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.7.2 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [38041ee0] + Cbc_jll v200.1000.800+0 ⌅ [3830e938] + Cgl_jll v0.6000.600+0 ⌅ [06985876] + Clp_jll v100.1700.700+1 ⌅ [be027038] + CoinUtils_jll v200.1100.600+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 [0234f1f7] + HDF5_jll v2.1.2+0 [8fd58aa0] + HiGHS_jll v1.14.0+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [d7ed1dd3] + MUMPS_seq_jll v500.900.0+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [7da25872] + Osi_jll v0.10800.700+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 25.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.4 s ✓ MacroTools 0.9 s ✓ Reexport 1.2 s ✓ Statistics 1.3 s ✓ ConstructionBase 2.3 s ✓ IrrationalConstants 1.1 s ✓ StaticArraysCore 1.6 s ✓ OrderedCollections 1.0 s ✓ StableRNGs 1.0 s ✓ HashArrayMappedTries 1.2 s ✓ DocStringExtensions 1.0 s ✓ CEnum 1.0 s ✓ ExprTools 1.0 s ✓ IfElse 1.5 s ✓ TranscodingStreams 1.4 s ✓ Requires 1.6 s ✓ NaNMath 1.1 s ✓ DelimitedFiles 2.0 s ✓ AMD 1.8 s ✓ GenericLinearAlgebra 35.0 s ✓ Unitful 1.3 s ✓ Compat 1.6 s ✓ Preferences 12.8 s ✓ MutableArithmetics 1.9 s ✓ CommonSubexpressions 4.3 s ✓ FixedPointNumbers 1.6 s ✓ Statistics → SparseArraysExt 0.8 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.9 s ✓ DiffResults 3.8 s ✓ DataStructures 1.0 s ✓ ScopedValues 4.5 s ✓ AbstractFBCModels 1.6 s ✓ LogExpFunctions 1.6 s ✓ PikaParser 3.4 s ✓ TimerOutputs 1.1 s ✓ CodecZlib 9.2 s ✓ FileIO 1.7 s ✓ QDLDL 2.5 s ✓ Unitful → PrintfExt 2.3 s ✓ Unitful → ConstructionBaseUnitfulExt 2.4 s ✓ Unitful → NaNMathExt 1.0 s ✓ Compat → CompatLinearAlgebraExt 2.4 s ✓ JLLWrappers 2.0 s ✓ SnoopPrecompile 2.4 s ✓ MPIPreferences 2.0 s ✓ PrecompileTools 3.0 s ✓ ColorTypes 3.2 s ✓ ConstraintTrees 2.9 s ✓ METIS_jll 2.6 s ✓ libaec_jll 2.5 s ✓ aws_c_common_jll 2.4 s ✓ OpenBLAS32_jll 2.4 s ✓ Xorg_libpciaccess_jll 2.5 s ✓ Bzip2_jll 2.4 s ✓ LLVMOpenMP_jll 2.5 s ✓ Libiconv_jll 2.5 s ✓ s2n_tls_jll 2.6 s ✓ HiGHS_jll 2.4 s ✓ ECOS_jll 1.6 s ✓ dlfcn_win32_jll 2.4 s ✓ ASL_jll 1.7 s ✓ MicrosoftMPI_jll 2.5 s ✓ OpenSpecFun_jll 2.5 s ✓ GLPK_jll 2.5 s ✓ cddlib_jll 4.7 s ✓ MPItrampoline_jll 14.7 s ✓ StaticArrays 17.9 s ✓ Parsers 48.7 s ✓ JLD2 1.3 s ✓ ColorTypes → StyledStringsExt 8.8 s ✓ Colors 2.2 s ✓ MUMPS_seq_jll 2.2 s ✓ aws_checksums_jll 2.2 s ✓ aws_c_sdkutils_jll 2.4 s ✓ aws_c_cal_jll 2.2 s ✓ aws_c_compression_jll 2.3 s ✓ CoinUtils_jll 1.3 s ✓ CodecBzip2 2.2 s ✓ SCS_jll 2.4 s ✓ XML2_jll 5.6 s ✓ SpecialFunctions 1.8 s ✓ StaticArrays → StaticArraysStatisticsExt 1.6 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3.7 s ✓ JSON 2.3 s ✓ aws_c_io_jll 2.3 s ✓ Osi_jll 2.2 s ✓ SBML_jll 2.2 s ✓ Hwloc_jll 1.3 s ✓ DiffRules 7.0 s ✓ JSONFBCModels 2.4 s ✓ aws_c_http_jll 2.1 s ✓ Clp_jll 15.8 s ✓ SBML 2.3 s ✓ MPICH_jll 4.3 s ✓ OpenMPI_jll 4.4 s ✓ MPIABI_jll 6.7 s ✓ ForwardDiff 2.2 s ✓ aws_c_auth_jll 2.3 s ✓ Cgl_jll 4.1 s ✓ SBMLFBCModels 3.9 s ✓ mpif_jll 1.7 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 1.9 s ✓ Unitful → ForwardDiffExt 80.5 s ✓ MathOptInterface 2.1 s ✓ aws_c_s3_jll 2.1 s ✓ Cbc_jll 6.1 s ✓ MathOptIIS 47.6 s ✓ SCS 64.8 s ✓ JuMP 13.5 s ✓ Polyhedra 122.4 s ✓ Clarabel 11.2 s ✓ ECOS 11.7 s ✓ GLPK 41.7 s ✓ Clp 2.8 s ✓ HDF5_jll 10.7 s ✓ Cbc 41.5 s ✓ HiGHS 19.9 s ✓ COBREXA 11.6 s ✓ Polyhedra → PolyhedraJuMPExt 10.6 s ✓ CDDLib 12.6 s ✓ HDF5 47.9 s ✓ sparseQFCA 121 dependencies successfully precompiled in 941 seconds. 39 already precompiled. Precompilation completed after 971.73s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_azgyhd/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 ⌃ [9961bab8] Cbc v1.2.0 ⌅ [61c947e1] Clarabel v0.7.1 ⌃ [e2554f3b] Clp v1.2.2 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.3 [87dc4568] HiGHS v1.23.0 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.30.1 [b8f27783] MathOptInterface v1.51.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.3 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_azgyhd/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 ⌃ [9961bab8] Cbc v1.2.0 ⌅ [61c947e1] Clarabel v0.7.1 ⌃ [e2554f3b] Clp v1.2.2 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.1 [187b0558] ConstructionBase v1.6.0 [864edb3b] DataStructures v0.19.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.19.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.3 [60bf3e95] GLPK v1.2.1 ⌅ [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.23.0 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.8.0 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.30.1 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.2.0 [b8f27783] MathOptInterface v1.51.0 [d8a4904e] MutableArithmetics v1.7.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.4 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.3 [7e506255] ScopedValues v1.6.2 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.7.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [38041ee0] Cbc_jll v200.1000.800+0 ⌅ [3830e938] Cgl_jll v0.6000.600+0 ⌅ [06985876] Clp_jll v100.1700.700+1 ⌅ [be027038] CoinUtils_jll v200.1100.600+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 [0234f1f7] HDF5_jll v2.1.2+0 [8fd58aa0] HiGHS_jll v1.14.0+0 [e33a78d0] Hwloc_jll v2.13.0+1 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [d7ed1dd3] MUMPS_seq_jll v500.900.0+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.33+1 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [7da25872] Osi_jll v0.10800.700+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 Distributed Reversibility Correction: Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-6 Number of reversibe blocked in forward direction : 44 Number of reversibe blocked in backward direction : 51 Number of irreversible reactions after Correction : 313 Number of reversible reactions after Correction : 206 terminate called after throwing an instance of 'std::system_error' what(): Resource temporarily unavailable [731] signal 6 (-6): Aborted in expression starting at timing.jl:395 unknown function (ip: 0x76928d330ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) __verbose_terminate_handler at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/vterminate.cc:95:10 __terminate at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48:15 terminate at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58:27 __cxa_throw at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98:18 __throw_system_error at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/src/c++11/system_error.cc:599:5 _M_start_thread at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/src/c++11/thread.cc:176:27 _ZN17HighsTaskExecutor10initializeEi.part.668 at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) _ZN5Highs19calledOptimizeModelEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) Highs_run at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/gen/libhighs.jl:328:9 [inlined] _Highs_run_workaround_issue_316 at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2253:3 [inlined] #47 at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2300:3 [inlined] disable_sigint at ./c.jl:167:3 optimize! at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2300:67 optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/Bridges/bridge_optimizer.jl:367:6 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/MathOptInterface.jl:122:4 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/Utilities/cachingoptimizer.jl:370:51 unknown function (ip: 0x76925ff99482) at (unknown file) _jl_invoke at /source/src/gf.c:4125:23 [inlined] ijl_apply_generic at /source/src/gf.c:4351:12 #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:610:106 optimize! at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:560:12 [inlined] QFCA at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/QFCA/SQFCA.jl:79:419 QFCA at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/QFCA/SQFCA.jl:61:1 unknown function (ip: 0x76925f8dcb74) at (unknown file) _jl_invoke at /source/src/gf.c:4125:23 [inlined] ijl_apply_generic at /source/src/gf.c:4351:12 top-level scope at ./timing.jl:739:24 jl_invoke_oneshot at /source/src/gf.c:4160:23 ijl_eval_thunk at /source/src/toplevel.c:760:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4125:23 [inlined] ijl_apply_generic at /source/src/gf.c:4351:12 _include at ./loading.jl:3173:35 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4125:23 [inlined] ijl_apply_generic at /source/src/gf.c:4351:12 jl_apply at /source/src/julia.h:2328:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:353 _start at ./client.jl:593:35 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4125:23 [inlined] ijl_apply_generic at /source/src/gf.c:4351:12 jl_apply at /source/src/julia.h:2328:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x76928d2cd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 73298075 (Pool: 73296747; Big: 1328); GC: 29 Testing failed after 223.66s ERROR: LoadError: Package sparseQFCA errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 2334.4s: the process was aborted