Package evaluation to test sparseQFCA on Julia 1.14.0-DEV.2172 (32456e37ae*) started at 2026-05-13T01:06:28.803 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.65s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed SnoopPrecompile ─────── v1.0.3 Installed DiffResults ─────────── v1.1.0 Installed HiGHS_jll ───────────── v1.14.0+0 Installed DataStructures ──────── v0.19.4 Installed JLD2 ────────────────── v0.5.15 Installed MacroTools ──────────── v0.5.16 Installed ForwardDiff ─────────── v1.3.3 Installed SBML ────────────────── v1.6.0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed s2n_tls_jll ─────────── v1.7.3+0 Installed libaec_jll ──────────── v1.1.6+0 Installed ConstructionBase ────── v1.6.0 Installed DelimitedFiles ──────── v1.9.1 Installed MPICH_jll ───────────── v5.0.1+0 Installed HiGHS ───────────────── v1.23.0 Installed Clp ─────────────────── v1.2.2 Installed aws_c_cal_jll ───────── v0.9.13+0 Installed aws_c_common_jll ────── v0.12.6+0 Installed CodecZlib ───────────── v0.7.8 Installed Cgl_jll ─────────────── v0.6000.600+0 Installed Cbc_jll ─────────────── v200.1000.800+0 Installed ExprTools ───────────── v0.1.10 Installed TranscodingStreams ──── v0.11.3 Installed SBMLFBCModels ───────── v1.1.1 Installed OrderedCollections ──── v1.8.1 Installed MicrosoftMPI_jll ────── v10.1.4+3 (no artifacts on this platform) Installed HashArrayMappedTries ── v0.2.0 Installed Clp_jll ─────────────── v100.1700.700+1 Installed MPIABI_jll ──────────── v0.1.5+0 Installed CDDLib ──────────────── v0.10.2 Installed MUMPS_seq_jll ───────── v500.900.0+0 Installed Compat ──────────────── v4.18.1 Installed Statistics ──────────── v1.11.1 Installed Clarabel ────────────── v0.7.1 Installed PrecompileTools ─────── v1.3.3 Installed CoinUtils_jll ───────── v200.1100.600+0 Installed CEnum ───────────────── v0.5.0 Installed dlfcn_win32_jll ─────── v1.4.2+0 (no artifacts on this platform) Installed TimerOutputs ────────── v0.5.29 Installed Xorg_libpciaccess_jll ─ v0.19.0+0 Installed Colors ──────────────── v0.13.1 Installed ConstraintTrees ─────── v1.11.1 Installed ASL_jll ─────────────── v0.1.3+0 Installed CommonSubexpressions ── v0.3.1 Installed CodecBzip2 ──────────── v0.8.5 Installed mpif_jll ────────────── v0.1.7+0 Installed StaticArraysCore ────── v1.4.4 Installed IrrationalConstants ─── v0.2.6 Installed AbstractFBCModels ───── v1.3.0 Installed StaticArrays ────────── v1.9.18 Installed FileIO ──────────────── v1.19.0 Installed JuMP ────────────────── v1.30.1 Installed aws_c_s3_jll ────────── v0.11.5+0 Installed NaNMath ─────────────── v1.1.3 Installed Requires ────────────── v1.3.1 Installed ColorTypes ──────────── v0.12.1 Installed GenericLinearAlgebra ── v0.3.19 Installed QDLDL ───────────────── v0.4.1 Installed SCS ─────────────────── v2.6.3 Installed AMD ─────────────────── v0.5.3 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed LogExpFunctions ─────── v0.3.29 Installed HDF5_jll ────────────── v2.1.2+0 Installed StableRNGs ──────────── v1.0.4 Installed aws_c_io_jll ────────── v0.26.3+0 Installed DiffRules ───────────── v1.15.1 Installed SBML_jll ────────────── v5.21.0+0 Installed OpenBLAS32_jll ──────── v0.3.33+0 Installed Cbc ─────────────────── v1.2.0 Installed OpenMPI_jll ─────────── v5.0.11+0 Installed ECOS_jll ────────────── v200.0.800+0 Installed JSON ────────────────── v0.21.4 Installed ECOS ────────────────── v1.1.3 Installed Hwloc_jll ───────────── v2.13.0+1 Installed Parsers ─────────────── v2.8.4 Installed IfElse ──────────────── v0.1.1 Installed GLPK_jll ────────────── v5.0.1+1 Installed aws_c_sdkutils_jll ──── v0.2.4+1 Installed ScopedValues ────────── v1.6.2 Installed aws_checksums_jll ───── v0.2.10+0 Installed Unitful ─────────────── v1.28.0 Installed XML2_jll ────────────── v2.13.9+0 Installed PikaParser ──────────── v0.6.1 Installed JSONFBCModels ───────── v1.0.1 Installed COBREXA ─────────────── v2.9.1 Installed SpecialFunctions ────── v2.7.2 Installed MathOptIIS ──────────── v0.2.0 Installed Reexport ────────────── v1.2.2 Installed FixedPointNumbers ───── v0.8.5 Installed MPIPreferences ──────── v0.1.12 Installed cddlib_jll ──────────── v0.94.14+0 Installed Preferences ─────────── v1.5.2 Installed MutableArithmetics ──── v1.7.1 Installed JLLWrappers ─────────── v1.8.0 Installed Polyhedra ───────────── v0.8.1 Installed Libiconv_jll ────────── v1.18.0+0 Installed aws_c_compression_jll ─ v0.3.2+0 Installed aws_c_http_jll ──────── v0.10.13+0 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed MPItrampoline_jll ───── v5.5.6+0 Installed METIS_jll ───────────── v5.1.3+0 Installed SCS_jll ─────────────── v300.200.1100+0 Installed aws_c_auth_jll ──────── v0.9.6+0 Installed GLPK ────────────────── v1.2.1 Installed DocStringExtensions ─── v0.9.5 Installed Osi_jll ─────────────── v0.10800.700+0 Installed MathOptInterface ────── v1.51.0 Installed HDF5 ────────────────── v0.17.3 Installed sparseQFCA ──────────── v2.3.0 Installing 35 artifacts Installed artifact aws_c_sdkutils 54.9 KiB Installed artifact aws_c_common 285.2 KiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact aws_c_io 181.7 KiB Installed artifact aws_c_auth 130.3 KiB Installed artifact aws_c_cal 1.2 MiB Installed artifact METIS 1.1 MiB Installed artifact Cbc 1.1 MiB Installed artifact HDF5 6.1 MiB Installed artifact MPICH 8.8 MiB Installed artifact aws_c_s3 143.0 KiB Installed artifact ASL 276.3 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Clp 1.4 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact aws_c_http 387.4 KiB Installed artifact HiGHS 2.5 MiB Installed artifact SCS 543.6 KiB Installed artifact Osi 430.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Hwloc 3.5 MiB Installed artifact s2n_tls 1.8 MiB Installed artifact aws_c_compression 13.4 KiB Installed artifact aws_checksums 87.0 KiB Installed artifact libaec 50.0 KiB Installed artifact ECOS 75.2 KiB Installed artifact GLPK 3.1 MiB Installed artifact XML2 2.5 MiB Installed artifact CoinUtils 762.1 KiB Installed artifact Cgl 609.9 KiB Installed artifact cddlib 1.0 MiB Installed artifact Libiconv 1.9 MiB Installed artifact SBML 6.0 MiB Installed artifact MUMPS_seq 9.1 MiB Installed artifact OpenBLAS32 10.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 ⌃ [9961bab8] + Cbc v1.2.0 ⌅ [61c947e1] + Clarabel v0.7.1 ⌃ [e2554f3b] + Clp v1.2.2 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.1 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.4 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.19.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.3 [60bf3e95] + GLPK v1.2.1 ⌅ [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.23.0 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.30.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.2.0 [b8f27783] + MathOptInterface v1.51.0 [d8a4904e] + MutableArithmetics v1.7.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.4 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.3 [7e506255] + ScopedValues v1.6.2 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.7.2 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.28.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [38041ee0] + Cbc_jll v200.1000.800+0 ⌅ [3830e938] + Cgl_jll v0.6000.600+0 ⌅ [06985876] + Clp_jll v100.1700.700+1 ⌅ [be027038] + CoinUtils_jll v200.1100.600+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 [0234f1f7] + HDF5_jll v2.1.2+0 [8fd58aa0] + HiGHS_jll v1.14.0+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [d7ed1dd3] + MUMPS_seq_jll v500.900.0+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.33+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [7da25872] + Osi_jll v0.10800.700+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.6+0 [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 31.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.4 s ✓ MacroTools 0.9 s ✓ Reexport 1.2 s ✓ Statistics 1.3 s ✓ ConstructionBase 2.4 s ✓ IrrationalConstants 1.1 s ✓ StaticArraysCore 1.6 s ✓ OrderedCollections 1.0 s ✓ StableRNGs 1.0 s ✓ HashArrayMappedTries 1.3 s ✓ DocStringExtensions 1.0 s ✓ CEnum 1.0 s ✓ ExprTools 0.9 s ✓ IfElse 1.5 s ✓ TranscodingStreams 1.4 s ✓ Requires 1.2 s ✓ NaNMath 1.1 s ✓ DelimitedFiles 2.1 s ✓ AMD 1.9 s ✓ GenericLinearAlgebra 36.3 s ✓ Unitful 1.3 s ✓ Compat 1.7 s ✓ Preferences 13.2 s ✓ MutableArithmetics 1.9 s ✓ CommonSubexpressions 4.4 s ✓ FixedPointNumbers 1.7 s ✓ Statistics → SparseArraysExt 0.9 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.0 s ✓ DiffResults 3.9 s ✓ DataStructures 1.0 s ✓ ScopedValues 4.6 s ✓ AbstractFBCModels 1.5 s ✓ LogExpFunctions 1.6 s ✓ PikaParser 3.6 s ✓ TimerOutputs 1.1 s ✓ CodecZlib 8.3 s ✓ FileIO 1.3 s ✓ QDLDL 2.3 s ✓ Unitful → PrintfExt 2.2 s ✓ Unitful → ConstructionBaseUnitfulExt 2.1 s ✓ Unitful → NaNMathExt 0.9 s ✓ Compat → CompatLinearAlgebraExt 2.0 s ✓ JLLWrappers 1.8 s ✓ SnoopPrecompile 2.2 s ✓ MPIPreferences 1.4 s ✓ PrecompileTools 3.0 s ✓ ColorTypes 3.4 s ✓ ConstraintTrees 2.5 s ✓ METIS_jll 2.4 s ✓ libaec_jll 2.6 s ✓ aws_c_common_jll 2.6 s ✓ OpenBLAS32_jll 2.4 s ✓ Xorg_libpciaccess_jll 2.4 s ✓ Bzip2_jll 2.3 s ✓ LLVMOpenMP_jll 2.0 s ✓ Libiconv_jll 2.7 s ✓ s2n_tls_jll 2.5 s ✓ HiGHS_jll 2.3 s ✓ ECOS_jll 1.7 s ✓ dlfcn_win32_jll 2.6 s ✓ ASL_jll 1.7 s ✓ MicrosoftMPI_jll 2.5 s ✓ OpenSpecFun_jll 2.4 s ✓ GLPK_jll 2.5 s ✓ cddlib_jll 4.8 s ✓ MPItrampoline_jll 14.2 s ✓ StaticArrays 18.0 s ✓ Parsers 51.4 s ✓ JLD2 1.4 s ✓ ColorTypes → StyledStringsExt 8.8 s ✓ Colors 2.5 s ✓ MUMPS_seq_jll 2.5 s ✓ aws_checksums_jll 2.5 s ✓ aws_c_sdkutils_jll 2.5 s ✓ aws_c_cal_jll 2.4 s ✓ aws_c_compression_jll 2.5 s ✓ CoinUtils_jll 1.5 s ✓ CodecBzip2 2.4 s ✓ SCS_jll 2.5 s ✓ XML2_jll 5.9 s ✓ SpecialFunctions 2.0 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 4.3 s ✓ JSON 2.4 s ✓ aws_c_io_jll 2.3 s ✓ Osi_jll 2.5 s ✓ SBML_jll 2.6 s ✓ Hwloc_jll 1.4 s ✓ DiffRules 8.1 s ✓ JSONFBCModels 2.5 s ✓ aws_c_http_jll 2.6 s ✓ Clp_jll 19.0 s ✓ SBML 2.6 s ✓ MPICH_jll 5.2 s ✓ OpenMPI_jll 5.0 s ✓ MPIABI_jll 8.0 s ✓ ForwardDiff 2.6 s ✓ aws_c_auth_jll 2.7 s ✓ Cgl_jll 5.6 s ✓ SBMLFBCModels 5.2 s ✓ mpif_jll 2.2 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 2.6 s ✓ Unitful → ForwardDiffExt 96.7 s ✓ MathOptInterface 2.5 s ✓ aws_c_s3_jll 2.6 s ✓ Cbc_jll 8.7 s ✓ MathOptIIS 58.6 s ✓ SCS 61.1 s ✓ JuMP 14.2 s ✓ Polyhedra 122.1 s ✓ Clarabel 11.5 s ✓ ECOS 12.5 s ✓ GLPK 43.0 s ✓ Clp 2.8 s ✓ HDF5_jll 11.1 s ✓ Cbc 42.3 s ✓ HiGHS 19.9 s ✓ COBREXA 11.1 s ✓ Polyhedra → PolyhedraJuMPExt 10.8 s ✓ CDDLib 12.5 s ✓ HDF5 48.8 s ✓ sparseQFCA 121 dependencies successfully precompiled in 991 seconds. 39 already precompiled. Precompilation completed after 1026.31s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_0pjDvb/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 ⌃ [9961bab8] Cbc v1.2.0 ⌅ [61c947e1] Clarabel v0.7.1 ⌃ [e2554f3b] Clp v1.2.2 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.3 [87dc4568] HiGHS v1.23.0 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.30.1 [b8f27783] MathOptInterface v1.51.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.3 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_0pjDvb/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 ⌃ [9961bab8] Cbc v1.2.0 ⌅ [61c947e1] Clarabel v0.7.1 ⌃ [e2554f3b] Clp v1.2.2 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.1 [187b0558] ConstructionBase v1.6.0 [864edb3b] DataStructures v0.19.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.19.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.3 [60bf3e95] GLPK v1.2.1 ⌅ [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.23.0 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.8.0 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.30.1 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.2.0 [b8f27783] MathOptInterface v1.51.0 [d8a4904e] MutableArithmetics v1.7.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.4 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.3 [7e506255] ScopedValues v1.6.2 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.7.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.28.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [38041ee0] Cbc_jll v200.1000.800+0 ⌅ [3830e938] Cgl_jll v0.6000.600+0 ⌅ [06985876] Clp_jll v100.1700.700+1 ⌅ [be027038] CoinUtils_jll v200.1100.600+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 [0234f1f7] HDF5_jll v2.1.2+0 [8fd58aa0] HiGHS_jll v1.14.0+0 [e33a78d0] Hwloc_jll v2.13.0+1 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [d7ed1dd3] MUMPS_seq_jll v500.900.0+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.33+0 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [7da25872] Osi_jll v0.10800.700+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.6+0 [9aeb927a] mpif_jll v0.1.7+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 3: terminate called after throwing an instance of 'std::system_error' From worker 3: what(): Resource temporarily unavailable From worker 3: From worker 3: [737] signal 6 (-6): Aborted From worker 3: in expression starting at none:0 From worker 3: unknown function (ip: 0x749a16e96ebc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 3: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 3: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 3: __verbose_terminate_handler at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/vterminate.cc:95:10 From worker 3: __terminate at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48:15 From worker 3: terminate at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58:27 From worker 3: __cxa_throw at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98:18 From worker 3: __throw_system_error at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/src/c++11/system_error.cc:599:5 From worker 3: _M_start_thread at /workspace/srcdir/gcc-15.2.0/libstdc++-v3/src/c++11/thread.cc:176:27 From worker 3: _ZN17HighsTaskExecutor10initializeEi.part.668 at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) From worker 3: _ZN5Highs19calledOptimizeModelEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) From worker 3: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) From worker 3: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/0f5853b2f0786049f8ae5d642f412a7a73bfad68/lib/libhighs.so (unknown line) From worker 3: Highs_run at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/gen/libhighs.jl:328:9 [inlined] From worker 3: _Highs_run_workaround_issue_316 at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2253:3 [inlined] From worker 3: #47 at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2300:3 [inlined] From worker 3: disable_sigint at ./c.jl:167:3 From worker 3: optimize! at /home/pkgeval/.julia/packages/HiGHS/yPMPW/src/MOI_wrapper.jl:2300:67 From worker 3: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/Bridges/bridge_optimizer.jl:367:6 [inlined] From worker 3: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/MathOptInterface.jl:122:4 [inlined] From worker 3: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/EMtxt/src/Utilities/cachingoptimizer.jl:370:51 From worker 3: unknown function (ip: 0x7499dcceb4d2) at (unknown file) From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:610:106 From worker 3: optimize! at /home/pkgeval/.julia/packages/JuMP/EHXNP/src/optimizer_interface.jl:560:12 From worker 3: unknown function (ip: 0x7499dcce5f12) at (unknown file) From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676:25 [inlined] From worker 3: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:306:158 From worker 3: #pfor##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/macros.jl:86:9 From worker 3: unknown function (ip: 0x7499dcca1c3a) at (unknown file) From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: jl_apply at /source/src/julia.h:2328:12 [inlined] From worker 3: jl_f_invokelatest at /source/src/builtins.c:910:23 From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: jl_apply at /source/src/julia.h:2328:12 [inlined] From worker 3: jl_f__apply_iterate at /source/src/builtins.c:897:26 From worker 3: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:283 From worker 3: run_work_thunk at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70:3 From worker 3: unknown function (ip: 0x7499dcc78acb) at (unknown file) From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: run_work_thunk_remotevalue at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:79:3 From worker 3: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:88:4 From worker 3: unknown function (ip: 0x7499dcc7869f) at (unknown file) From worker 3: _jl_invoke at /source/src/gf.c:4125:23 [inlined] From worker 3: ijl_apply_generic at /source/src/gf.c:4351:12 From worker 3: jl_apply at /source/src/julia.h:2328:12 [inlined] From worker 3: start_task at /source/src/task.c:1275:19 From worker 3: Allocations: 29051283 (Pool: 29050029; Big: 1254); GC: 14 Worker 3 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:978 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:986 [3] unsafe_read(s::Sockets.TCPSocket, p::Ptr{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:908 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:907 [5] read! @ ./io.jl:912 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(3) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(3) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] (Array{Int64})(A::Vector{Any}) @ Core ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:517 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [10] _start() @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 4, 5, 6, 7, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1279 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/cluster.jl:1074 Testing failed after 1298.48s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2423.46s: package tests unexpectedly errored