Package evaluation to test SingleCellProjections on Julia 1.14.0-DEV.2172 (32456e37ae*) started at 2026-05-12T23:47:07.795


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 15.19s


################################################################################
# Installation
#

Installing SingleCellProjections...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [03d38035] + SingleCellProjections v0.4.4
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.22.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.44
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  [38540f10] + CommonSolve v0.2.6
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
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  [c8ec2601] + H5Zblosc v0.1.2
  [f67ccb44] + HDF5 v0.17.3
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.5
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
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  [49dc5b4e] + KernelDensitySJ v0.2.2
  [b964fa9f] + LaTeXStrings v1.4.0
⌃ [d3d80556] + LineSearches v7.5.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.12
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
⌅ [d41bc354] + NLSolversBase v7.10.0
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.27
⌅ [429524aa] + Optim v1.13.3
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.37
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.2
  [08abe8d2] + PrettyTables v3.3.2
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.4.0
  [1fd47b50] + QuadGK v2.11.3
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
⌅ [f2b01f46] + Roots v2.3.0
  [f56ea72b] + SCTransform v0.3.1
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.9
  [efcf1570] + Setfield v1.1.2
  [eddce310] + SingleCell10x v0.2.2
  [03d38035] + SingleCellProjections v0.4.4
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.7.2
  [c5dd0088] + StableHashTraits v2.0.3
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
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  [bd369af6] + Tables v1.12.1
  [59d54670] + ThreadedSparseArrays v0.2.3
  [3bb67fe8] + TranscodingStreams v0.11.3
  [9d95972d] + TupleTools v1.6.0
  [0b7ba130] + Blosc_jll v1.21.7+0
  [0234f1f7] + HDF5_jll v2.1.2+0
  [e33a78d0] + Hwloc_jll v2.13.0+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [b5ada748] + MPIABI_jll v0.1.5+0
  [7cb0a576] + MPICH_jll v5.0.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.6+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.11+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0
⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0
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  [73a04cd5] + aws_c_compression_jll v0.3.2+0
  [3254fc65] + aws_c_http_jll v0.10.13+0
  [13c41daa] + aws_c_io_jll v0.26.3+0
⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0
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  [9fa8497b] + Future v1.11.0
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  [9e88b42a] + Serialization v1.11.0
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  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
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  [8e850b90] + libblastrampoline_jll v5.15.0+0
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  [3f19e933] + p7zip_jll v17.8.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 11.42s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
ERROR: LoadError: AssertionError: Internal error, got AᵀB, ABᵀ or AᵀBᵀ where A and B are sparse.
Stacktrace:
  [1] (::SingleCellProjections.MatrixExpressions.AdjointSparseOperation)(A::LinearAlgebra.Adjoint{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, B::SparseArrays.SparseMatrixCSC{Float64, Int64})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/adjoint_sparse_chain.jl:162
  [2] _apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:75
  [3] _apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:74
  [4] apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:87 [inlined]
  [5] apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:84 [inlined]
  [6] diag_chain_mul(A::SingleCellProjections.MatrixExpressions.MatrixProduct{SingleCellProjections.MatrixExpressions.MatrixSum})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/diagmul_chain.jl:162
  [7] compute(D::SingleCellProjections.MatrixExpressions.Diag)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/linalg.jl:132
  [8] compute(D::SingleCellProjections.MatrixExpressions.DiagGram{SingleCellProjections.MatrixExpressions.MatrixSum})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/linalg.jl:57
  [9] variable_sum_squares(matrix::SingleCellProjections.MatrixExpressions.MatrixSum)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:4
 [10] variable_sum_squares(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:7 [inlined]
 [11] variable_var(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:19
 [12] variable_std(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:31
 [13] _setscaling!(model::SingleCellProjections.NormalizationModel, data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame}, design::SingleCellProjections.DesignMatrix, scale::Bool, min_std::Float64)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:70
 [14] SingleCellProjections.NormalizationModel(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame}, design::SingleCellProjections.DesignMatrix; scale::Bool, min_std::Float64, annotate::Bool, rtol::Float64, var::Symbol, obs::Symbol)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:119
 [15] NormalizationModel
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:101 [inlined]
 [16] #normalize_matrix#155
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:224 [inlined]
 [17] normalize_matrix
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:223 [inlined]
 [18] #normalize_matrix#156
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:259 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:21 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:6 [inlined]
 [22] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [23] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:118
 [24] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:327
 [25] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/SingleCellProjections.jl:138
 [26] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [27] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [28] top-level scope
    @ stdin:5
 [29] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [31] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [32] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [33] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/src/SingleCellProjections.jl:1
in expression starting at stdin:5
              ✗ SingleCellProjections
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2818
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2672
  [4] macro expansion
    @ ./loading.jl:2599 [inlined]
  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)
    @ Base ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2563
  [7] require
    @ ./loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base ./module.jl:137 [inlined]
 [11] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsPrincipalMomentAnalysisExt.jl:3
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [17] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [19] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsPrincipalMomentAnalysisExt.jl:1
in expression starting at stdin:5
              ✗ SingleCellProjections → SingleCellProjectionsPrincipalMomentAnalysisExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2818
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2672
  [4] macro expansion
    @ ./loading.jl:2599 [inlined]
  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)
    @ Base ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2563
  [7] require
    @ ./loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base ./module.jl:137 [inlined]
 [11] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsStableRNGsExt.jl:3
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [17] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [19] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsStableRNGsExt.jl:1
in expression starting at stdin:5
              ✗ SingleCellProjections → SingleCellProjectionsStableRNGsExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2818
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2672
  [4] macro expansion
    @ ./loading.jl:2599 [inlined]
  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)
    @ Base ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2563
  [7] require
    @ ./loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base ./module.jl:137 [inlined]
 [11] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsUMAPExt.jl:3
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [17] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [19] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsUMAPExt.jl:1
in expression starting at stdin:5
              ✗ SingleCellProjections → SingleCellProjectionsUMAPExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("03d38035-ed2f-4a36-82eb-797f1727ab2e"), "SingleCellProjections") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2818
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2672
  [4] macro expansion
    @ ./loading.jl:2599 [inlined]
  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)
    @ Base ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2563
  [7] require
    @ ./loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base ./module.jl:137 [inlined]
 [11] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsTSneExt.jl:3
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [17] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [19] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/ext/SingleCellProjectionsTSneExt.jl:1
in expression starting at stdin:5
              ✗ SingleCellProjections → SingleCellProjectionsTSneExt

Precompilation completed after 155.98s


################################################################################
# Testing
#

     Testing SingleCellProjections
      Status `/tmp/jl_EL62Ok/Project.toml`
  [1520ce14] AbstractTrees v0.4.5
  [944b1d66] CodecZlib v0.7.8
  [a93c6f00] DataFrames v1.8.2
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.125
  [38e38edf] GLM v1.9.4
  [c8ec2601] H5Zblosc v0.1.2
  [f67ccb44] HDF5 v0.17.3
⌃ [09f84164] HypothesisTests v0.11.6
  [e1d29d7a] Missings v1.2.0
  [b8a86587] NearestNeighbors v0.4.27
  [aea7be01] PrecompileTools v1.3.3
  [6a3ba550] PrincipalMomentAnalysis v0.2.2
  [f56ea72b] SCTransform v0.3.1
  [eddce310] SingleCell10x v0.2.2
  [03d38035] SingleCellProjections v0.4.4
  [860ef19b] StableRNGs v1.0.4
  [90137ffa] StaticArrays v1.9.18
  [10745b16] Statistics v1.11.1
  [24678dba] TSne v1.3.0
  [59d54670] ThreadedSparseArrays v0.2.3
⌅ [c4f8c510] UMAP v0.1.11
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_EL62Ok/Manifest.toml`
  [47edcb42] ADTypes v1.22.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.44
  [79e6a3ab] Adapt v4.5.2
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.24.0
  [a74b3585] Blosc v0.7.3
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.1.0
  [38540f10] CommonSolve v0.2.6
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [a33af91c] CompositionsBase v0.1.2
  [187b0558] ConstructionBase v1.6.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.2
  [864edb3b] DataStructures v0.19.4
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.18
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.125
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.7
  [1a297f60] FillArrays v1.16.0
  [6a86dc24] FiniteDiff v2.31.0
  [f6369f11] ForwardDiff v1.3.3
  [38e38edf] GLM v1.9.4
  [86223c79] Graphs v1.14.0
  [c8ec2601] H5Zblosc v0.1.2
  [f67ccb44] HDF5 v0.17.3
  [34004b35] HypergeometricFunctions v0.3.28
⌃ [09f84164] HypothesisTests v0.11.6
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.5
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.8.0
  [49dc5b4e] KernelDensitySJ v0.2.2
  [b964fa9f] LaTeXStrings v1.4.0
⌃ [d3d80556] LineSearches v7.5.1
  [2ab3a3ac] LogExpFunctions v0.3.29
⌅ [2fda8390] LsqFit v0.15.1
  [3da0fdf6] MPIPreferences v0.1.12
  [1914dd2f] MacroTools v0.5.16
  [e1d29d7a] Missings v1.2.0
⌅ [d41bc354] NLSolversBase v7.10.0
  [77ba4419] NaNMath v1.1.3
  [dd2c4c9e] NearestNeighborDescent v0.3.8
  [b8a86587] NearestNeighbors v0.4.27
⌅ [429524aa] Optim v1.13.3
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.37
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.2
  [08abe8d2] PrettyTables v3.3.2
  [6a3ba550] PrincipalMomentAnalysis v0.2.2
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.4.0
  [1fd47b50] QuadGK v2.11.3
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.9.0
⌅ [f2b01f46] Roots v2.3.0
  [f56ea72b] SCTransform v0.3.1
  [6c6a2e73] Scratch v1.3.0
  [91c51154] SentinelArrays v1.4.9
  [efcf1570] Setfield v1.1.2
  [1277b4bf] ShiftedArrays v2.0.0
  [699a6c99] SimpleTraits v0.9.5
  [eddce310] SingleCell10x v0.2.2
  [03d38035] SingleCellProjections v0.4.4
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.7.2
  [c5dd0088] StableHashTraits v2.0.3
  [860ef19b] StableRNGs v1.0.4
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [4c63d2b9] StatsFuns v1.5.2
  [3eaba693] StatsModels v0.7.9
  [892a3eda] StringManipulation v0.4.4
  [856f2bd8] StructTypes v1.11.0
  [24678dba] TSne v1.3.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [59d54670] ThreadedSparseArrays v0.2.3
  [3bb67fe8] TranscodingStreams v0.11.3
  [9d95972d] TupleTools v1.6.0
⌅ [c4f8c510] UMAP v0.1.11
⌅ [68821587] Arpack_jll v3.5.2+0
  [0b7ba130] Blosc_jll v1.21.7+0
  [0234f1f7] HDF5_jll v2.1.2+0
  [e33a78d0] Hwloc_jll v2.13.0+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [b5ada748] MPIABI_jll v0.1.5+0
  [7cb0a576] MPICH_jll v5.0.1+0
  [f1f71cc9] MPItrampoline_jll v5.5.6+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.11+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0
⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0
  [70f11efc] aws_c_cal_jll v0.9.13+0
  [73048d1d] aws_c_common_jll v0.12.6+0
  [73a04cd5] aws_c_compression_jll v0.3.2+0
  [3254fc65] aws_c_http_jll v0.10.13+0
  [13c41daa] aws_c_io_jll v0.26.3+0
⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0
  [1282aa60] aws_c_sdkutils_jll v0.2.4+1
  [b2a88e68] aws_checksums_jll v0.2.10+0
  [c4b69c83] dlfcn_win32_jll v1.4.2+0
  [477f73a3] libaec_jll v1.1.6+0
  [9aeb927a] mpif_jll v0.1.7+0
  [cddc5d3d] s2n_tls_jll v1.7.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.1+0
  [deac9b47] LibCURL_jll v8.20.0+1
  [e37daf67] LibGit2_jll v1.9.3+0
  [29816b5a] LibSSH2_jll v1.11.101+0
  [14a3606d] MozillaCACerts_jll v2026.3.19
  [4536629a] OpenBLAS_jll v0.3.33+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.6+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.69.0+0
  [3f19e933] p7zip_jll v17.8.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
ERROR: LoadError: AssertionError: Internal error, got AᵀB, ABᵀ or AᵀBᵀ where A and B are sparse.
Stacktrace:
  [1] (::SingleCellProjections.MatrixExpressions.AdjointSparseOperation)(A::LinearAlgebra.Adjoint{Float64, SparseArrays.SparseMatrixCSC{Float64, Int64}}, B::SparseArrays.SparseMatrixCSC{Float64, Int64})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/adjoint_sparse_chain.jl:162
  [2] _apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:75
  [3] _apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:74
  [4] apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}}, ind::Int64)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:87 [inlined]
  [5] apply_chain(co::SingleCellProjections.MatrixExpressions.ChainOrder{Union{SingleCellProjections.MatrixExpressions.AdjointSparseCopyOperation, SingleCellProjections.MatrixExpressions.AdjointSparseOperation, SingleCellProjections.MatrixExpressions.DiagMulOperation}, Vector{Union{SingleCellProjections.MatrixExpressions.MatrixSum, SingleCellProjections.MatrixExpressions.MatrixRef}}})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/chain.jl:84 [inlined]
  [6] diag_chain_mul(A::SingleCellProjections.MatrixExpressions.MatrixProduct{SingleCellProjections.MatrixExpressions.MatrixSum})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/diagmul_chain.jl:162
  [7] compute(D::SingleCellProjections.MatrixExpressions.Diag)
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/linalg.jl:132
  [8] compute(D::SingleCellProjections.MatrixExpressions.DiagGram{SingleCellProjections.MatrixExpressions.MatrixSum})
    @ SingleCellProjections.MatrixExpressions ~/.julia/packages/SingleCellProjections/30C4U/src/MatrixExpressions/linalg.jl:57
  [9] variable_sum_squares(matrix::SingleCellProjections.MatrixExpressions.MatrixSum)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:4
 [10] variable_sum_squares(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:7 [inlined]
 [11] variable_var(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:19
 [12] variable_std(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame})
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:31
 [13] _setscaling!(model::SingleCellProjections.NormalizationModel, data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame}, design::SingleCellProjections.DesignMatrix, scale::Bool, min_std::Float64)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:70
 [14] SingleCellProjections.NormalizationModel(data::SingleCellProjections.DataMatrix{SingleCellProjections.MatrixExpressions.MatrixSum, DataFrames.DataFrame, DataFrames.DataFrame}, design::SingleCellProjections.DesignMatrix; scale::Bool, min_std::Float64, annotate::Bool, rtol::Float64, var::Symbol, obs::Symbol)
    @ SingleCellProjections ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:119
 [15] NormalizationModel
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:101 [inlined]
 [16] #normalize_matrix#155
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:224 [inlined]
 [17] normalize_matrix
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:223 [inlined]
 [18] #normalize_matrix#156
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/normalize.jl:259 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:21 [inlined]
 [20] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [21] macro expansion
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:6 [inlined]
 [22] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [23] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:118
 [24] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:327
 [25] top-level scope
    @ ~/.julia/packages/SingleCellProjections/30C4U/src/SingleCellProjections.jl:138
 [26] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [27] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
 [28] top-level scope
    @ stdin:5
 [29] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [31] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [32] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:350
 [33] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/src/precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/src/SingleCellProjections.jl:1
in expression starting at stdin:5
  1 dependency had output during precompilation:
┌ SingleCellProjections
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

SingleCellProjections 
Failed to precompile SingleCellProjections [03d38035-ed2f-4a36-82eb-797f1727ab2e] to "/home/pkgeval/.julia/compiled/v1.14/SingleCellProjections/jl_H0wGsL" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/SingleCellProjections/30C4U/test/runtests.jl:1

Testing failed after 135.52s

ERROR: LoadError: Package SingleCellProjections errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162
  [3] Cmd(cmd::Cmd)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
  [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:352
 [12] _start()
    @ Base ./client.jl:593
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 340.68s: package fails to precompile