Package evaluation to test MoleculeDock on Julia 1.14.0-DEV.2172 (32456e37ae*) started at 2026-05-13T02:25:34.036 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.14s ################################################################################ # Installation # Installing MoleculeDock... Resolving package versions... Installed ImageIO ────────────────────────── v0.6.9 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed MosaicViews ────────────────────── v0.3.4 Installed ChunkCodecLibZstd ──────────────── v1.0.0 Installed Libtiff_jll ────────────────────── v4.7.2+0 Installed ImageMagick ────────────────────── v1.4.2 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed UnsafePointers ─────────────────── v1.0.0 Installed SimpleWeightedGraphs ───────────── v1.5.1 Installed CondaPkg ───────────────────────── v0.2.34 Installed CpuId ──────────────────────────── v0.3.1 Installed NearestNeighbors ───────────────── v0.4.27 Installed CustomUnitRanges ───────────────── v1.0.2 Installed Giflib_jll ─────────────────────── v5.2.3+0 Installed Distances ──────────────────────── v0.10.12 Installed HistogramThresholding ──────────── v0.3.1 Installed NaNMath ────────────────────────── v1.1.3 Installed StaticArrayInterface ───────────── v1.10.0 Installed FileIO ─────────────────────────── v1.19.0 Installed Pidfile ────────────────────────── v1.3.0 Installed Graphics ───────────────────────── v1.1.3 Installed ScopedValues ───────────────────── v1.6.2 Installed WoodburyMatrices ───────────────── v1.1.0 Installed Reexport ───────────────────────── v1.2.2 Installed Tables ─────────────────────────── v1.12.1 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.4.0 Installed Preferences ────────────────────── v1.5.2 Installed RegionTrees ────────────────────── v0.3.2 Installed LERC_jll ───────────────────────── v4.1.0+0 Installed TableTraits ────────────────────── v1.0.1 Installed Polynomials ────────────────────── v4.1.1 Installed Imath_jll ──────────────────────── v3.2.2+0 Installed RangeArrays ────────────────────── v0.3.2 Installed MappedArrays ───────────────────── v0.4.3 Installed SortingAlgorithms ──────────────── v1.2.2 Installed UnPack ─────────────────────────── v1.0.2 Installed MoleculeDock ───────────────────── v0.1.0 Installed Inflate ────────────────────────── v0.1.5 Installed DataStructures ─────────────────── v0.19.4 Installed CodecZstd ──────────────────────── v0.8.7 Installed MacroTools ─────────────────────── v0.5.16 Installed OpenEXR_jll ────────────────────── v3.4.9+0 Installed Quaternions ────────────────────── v0.7.7 Installed ManualMemory ───────────────────── v0.1.8 Installed AbstractTrees ──────────────────── v0.4.5 Installed VectorizationBase ──────────────── v0.21.72 Installed LazyModules ────────────────────── v0.3.1 Installed oneTBB_jll ─────────────────────── v2022.3.0+0 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed micromamba_jll ─────────────────── v2.3.1+0 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed StatsBase ──────────────────────── v0.34.10 Installed ArrayInterface ─────────────────── v7.24.0 Installed HostCPUFeatures ────────────────── v0.1.18 Installed DataValueInterfaces ────────────── v1.0.0 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed CEnum ──────────────────────────── v0.5.0 Installed RealDot ────────────────────────── v0.1.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed StructUtils ────────────────────── v2.8.1 Installed IrrationalConstants ────────────── v0.2.6 Installed Clustering ─────────────────────── v0.15.8 Installed libzip_jll ─────────────────────── v1.11.3+0 Installed libpng_jll ─────────────────────── v1.6.58+0 Installed ImageTransformations ───────────── v0.10.2 Installed SimpleTraits ───────────────────── v0.9.5 Installed ColorVectorSpace ───────────────── v0.11.0 Installed ImageMetadata ──────────────────── v0.9.10 Installed ImageShow ──────────────────────── v0.3.8 Installed libsixel_jll ───────────────────── v1.10.5+0 Installed Interpolations ─────────────────── v0.16.2 Installed Scratch ────────────────────────── v1.3.0 Installed libwebp_jll ────────────────────── v1.6.0+0 Installed MoleculeFlow ───────────────────── v0.6.2 Installed ImageBinarization ──────────────── v0.3.1 Installed ImageMorphology ────────────────── v0.4.7 Installed Setfield ───────────────────────── v1.1.2 Installed pixi_jll ───────────────────────── v0.41.3+0 Installed ImageCore ──────────────────────── v0.10.5 Installed MetaGraphs ─────────────────────── v0.8.1 Installed ImageMagick_jll ────────────────── v7.1.2023+0 Installed AxisArrays ─────────────────────── v0.4.8 Installed PNGFiles ───────────────────────── v0.4.4 Installed FFTViews ───────────────────────── v0.3.2 Installed PythonCall ─────────────────────── v0.9.31 Installed DocStringExtensions ────────────── v0.9.5 Installed StackViews ─────────────────────── v0.1.2 Installed PkgVersion ─────────────────────── v0.3.3 Installed OpenJpeg_jll ───────────────────── v2.5.5+0 Installed JpegTurbo ──────────────────────── v0.1.6 Installed SLEEFPirates ───────────────────── v0.6.43 Installed TiledIteration ─────────────────── v0.5.0 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed HashArrayMappedTries ───────────── v0.2.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DataAPI ────────────────────────── v1.16.0 Installed Netpbm ─────────────────────────── v1.1.1 Installed ImageDistances ─────────────────── v0.2.17 Installed ImageQualityIndexes ────────────── v0.3.7 Installed SIMD ───────────────────────────── v3.7.2 Installed ImageAxes ──────────────────────── v0.6.12 Installed AbstractFFTs ───────────────────── v1.5.0 Installed Colors ─────────────────────────── v0.13.1 Installed StaticArraysCore ───────────────── v1.4.4 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed ColorSchemes ───────────────────── v3.31.0 Installed StaticArrays ───────────────────── v1.9.18 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed QOI ────────────────────────────── v1.0.2 Installed ColorTypes ─────────────────────── v0.12.1 Installed SciMLPublic ────────────────────── v1.0.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed openbabel_jll ──────────────────── v3.1.1+0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Parsers ────────────────────────── v2.8.4 Installed JSON ───────────────────────────── v1.5.2 Installed Requires ───────────────────────── v1.3.1 Installed OpenEXR ────────────────────────── v0.3.3 Installed JLLWrappers ────────────────────── v1.8.0 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed IterTools ──────────────────────── v1.10.0 Installed XZ_jll ─────────────────────────── v5.8.3+0 Installed ChunkCodecCore ─────────────────── v1.0.1 Installed TiffImages ─────────────────────── v0.11.9 Installed ThreadingUtilities ─────────────── v0.5.5 Installed ImageCorners ───────────────────── v0.1.3 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed JpegTurbo_jll ──────────────────── v3.1.5+0 Installed PaddedViews ────────────────────── v0.5.12 Installed Graphs ─────────────────────────── v1.14.0 Installed JLD2 ───────────────────────────── v0.6.4 Installed ConstructionBase ───────────────── v1.6.0 Installed Sixel ──────────────────────────── v0.1.5 Installed Adapt ──────────────────────────── v4.5.2 Installed TranscodingStreams ─────────────── v0.11.3 Installed TensorCore ─────────────────────── v0.1.1 Installed Compat ─────────────────────────── v4.18.1 Installed Statistics ─────────────────────── v1.11.1 Installed Xorg_libX11_jll ────────────────── v1.8.13+0 Installed ImageSegmentation ──────────────── v1.10.0 Installed LoopVectorization ──────────────── v0.12.173 Installed ImageContrastAdjustment ────────── v0.3.13 Installed StatsAPI ───────────────────────── v1.8.0 Installed ImageBase ──────────────────────── v0.1.7 Installed CoordinateTransformations ──────── v0.6.4 Installed WebP ───────────────────────────── v0.1.3 Installed ProgressMeter ──────────────────── v1.11.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.3 Installed CPUSummary ─────────────────────── v0.2.7 Installed Ratios ─────────────────────────── v0.4.5 Installed MicroMamba ─────────────────────── v0.1.15 Installed ChunkCodecLibZlib ──────────────── v1.0.0 Installed ComputationalResources ─────────── v0.3.2 Installed Parameters ─────────────────────── v0.12.3 Installed ChainRulesCore ─────────────────── v1.26.1 Installed IfElse ─────────────────────────── v0.1.1 Installed IntegralArrays ─────────────────── v0.1.6 Installed FixedPointNumbers ──────────────── v0.8.5 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed PtrArrays ──────────────────────── v1.4.0 Installed LittleCMS_jll ──────────────────── v2.19.0+0 Installed IntervalSets ───────────────────── v0.7.14 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed CatIndices ─────────────────────── v0.2.2 Installed IndirectArrays ─────────────────── v1.0.0 Installed FFTW_jll ───────────────────────── v3.3.12+0 Installed Xorg_libXext_jll ───────────────── v1.3.8+0 Installed Rotations ──────────────────────── v1.7.1 Installed FFTW ───────────────────────────── v1.10.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Images ─────────────────────────── v0.26.2 Installed ImageFiltering ─────────────────── v0.7.12 Installing 28 artifacts Installed artifact Giflib 154.6 KiB Installed artifact libsixel 177.3 KiB Installed artifact Imath 184.9 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact vina 720.6 KiB Installed artifact libpng 329.4 KiB Installed artifact FFTW 2.2 MiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenJpeg 421.8 KiB Installed artifact XZ 1.6 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXext 286.6 KiB Installed artifact libzip 177.6 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact LittleCMS 718.9 KiB Installed artifact OpenEXR 1.3 MiB Installed artifact libwebp 2.6 MiB Installed artifact LERC 267.4 KiB Installed artifact XML2 2.5 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libX11 4.8 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact ImageMagick 9.3 MiB Installed artifact openbabel 6.3 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [63b6304e] + MoleculeDock v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.5.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [aafaddc9] + CatIndices v0.2.2 [d360d2e6] + ChainRulesCore v1.26.1 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [992eb4ea] + CondaPkg v0.2.34 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.19.0 [53c48c17] + FixedPointNumbers v0.8.5 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.14.0 [076d061b] + HashArrayMappedTries v0.2.0 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.13 [a09fc81d] + ImageCore v0.10.5 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 [6a3955dd] + ImageFiltering v0.7.12 [82e4d734] + ImageIO v0.6.9 [6218d12a] + ImageMagick v1.4.2 [bc367c6b] + ImageMetadata v0.9.10 [787d08f9] + ImageMorphology v0.4.7 [2996bd0c] + ImageQualityIndexes v0.3.7 [80713f31] + ImageSegmentation v1.10.0 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.2 [916415d5] + Images v0.26.2 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [1d092043] + IntegralArrays v0.1.6 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.14 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.5.2 [b835a17e] + JpegTurbo v0.1.6 [10f19ff3] + LayoutPointers v0.1.17 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.3 ⌅ [626554b9] + MetaGraphs v0.8.1 [0b3b1443] + MicroMamba v0.1.15 [e1d29d7a] + Missings v1.2.0 [63b6304e] + MoleculeDock v0.1.0 [0907176b] + MoleculeFlow v0.6.2 [e94cdb99] + MosaicViews v0.3.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.27 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [fa939f87] + Pidfile v1.3.0 [eebad327] + PkgVersion v0.3.3 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.1.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [6099a3de] + PythonCall v0.9.31 [4b34888f] + QOI v1.0.2 [94ee1d12] + Quaternions v0.7.7 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [dee08c22] + RegionTrees v0.3.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [ec057cc2] + StructUtils v2.8.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.5 [731e570b] + TiffImages v0.11.9 [06e1c1a7] + TiledIteration v0.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [e17b2a0c] + UnsafePointers v1.0.0 [3d5dd08c] + VectorizationBase v0.21.72 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.1.0 [6e34b625] + Bzip2_jll v1.0.9+0 [f5851436] + FFTW_jll v3.3.12+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [59f7168a] + Giflib_jll v5.2.3+0 [c73af94c] + ImageMagick_jll v7.1.2023+0 [905a6f67] + Imath_jll v3.2.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [88015f11] + LERC_jll v4.1.0+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [d3a379c0] + LittleCMS_jll v2.19.0+0 [856f044c] + MKL_jll v2025.2.0+0 [18a262bb] + OpenEXR_jll v3.4.9+0 [643b3616] + OpenJpeg_jll v2.5.5+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.58+0 [075b6546] + libsixel_jll v1.10.5+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [f8abcde7] + micromamba_jll v2.3.1+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [deeba441] + openbabel_jll v3.1.1+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 23.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.5 s ✓ MacroTools 0.9 s ✓ Reexport 1.1 s ✓ MappedArrays 1.0 s ✓ TensorCore 1.3 s ✓ ConstructionBase 2.3 s ✓ IrrationalConstants 0.9 s ✓ DataValueInterfaces 1.0 s ✓ StatsAPI 1.3 s ✓ IterTools 1.2 s ✓ IntervalSets 1.0 s ✓ CEnum 1.1 s ✓ Inflate 1.4 s ✓ TranscodingStreams 1.1 s ✓ ChunkCodecCore 1.2 s ✓ Statistics 1.1 s ✓ StaticArraysCore 0.9 s ✓ IfElse 1.0 s ✓ PtrArrays 1.1 s ✓ ManualMemory 1.0 s ✓ DataAPI 1.0 s ✓ SciMLPublic 0.9 s ✓ RealDot 0.9 s ✓ CommonWorldInvalidations 1.0 s ✓ CustomUnitRanges 1.1 s ✓ LazyModules 1.5 s ✓ AbstractTrees 1.2 s ✓ AbstractFFTs 1.1 s ✓ ComputationalResources 0.9 s ✓ IndirectArrays 0.9 s ✓ UnPack 1.0 s ✓ UnsafePointers 1.0 s ✓ RangeArrays 1.5 s ✓ OrderedCollections 1.0 s ✓ HashArrayMappedTries 1.2 s ✓ DocStringExtensions 1.7 s ✓ OffsetArrays 0.9 s ✓ SIMDTypes 0.9 s ✓ IteratorInterfaceExtensions 1.1 s ✓ NaNMath 1.4 s ✓ Requires 2.7 s ✓ ProgressMeter 1.8 s ✓ WoodburyMatrices 1.5 s ✓ Scratch 2.1 s ✓ StructUtils 1.9 s ✓ CpuId 1.3 s ✓ Compat 2.0 s ✓ Preferences 1.2 s ✓ Pidfile 4.5 s ✓ PkgVersion 3.5 s ✓ SimpleTraits 0.9 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 0.9 s ✓ IntervalSets → IntervalSetsRandomExt 1.0 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 2.1 s ✓ CodecZstd 1.1 s ✓ ChunkCodecLibZlib 1.3 s ✓ ChunkCodecLibZstd 1.6 s ✓ Statistics → SparseArraysExt 4.3 s ✓ FixedPointNumbers 1.6 s ✓ Distances 0.9 s ✓ IntervalSets → IntervalSetsStatisticsExt 1.1 s ✓ AliasTables 2.1 s ✓ ThreadingUtilities 1.1 s ✓ Missings 1.2 s ✓ Quaternions 4.5 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.1 s ✓ Parameters 3.9 s ✓ DataStructures 1.1 s ✓ ScopedValues 1.5 s ✓ LogExpFunctions 1.1 s ✓ PaddedViews 1.0 s ✓ StackViews 1.0 s ✓ CatIndices 0.9 s ✓ TableTraits 1.0 s ✓ Ratios 1.1 s ✓ Adapt 9.5 s ✓ FileIO 1.7 s ✓ AxisAlgorithms 1.3 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 0.9 s ✓ Compat → CompatLinearAlgebraExt 1.4 s ✓ PrecompileTools 2.3 s ✓ JLLWrappers 3.0 s ✓ Setfield 2.0 s ✓ AxisArrays 3.0 s ✓ ColorTypes 1.6 s ✓ Distances → DistancesSparseArraysExt 1.2 s ✓ SortingAlgorithms 1.1 s ✓ MosaicViews 2.0 s ✓ Tables 1.0 s ✓ Ratios → RatiosFixedPointNumbersExt 1.3 s ✓ ArrayInterface 1.6 s ✓ Adapt → AdaptSparseArraysExt 0.9 s ✓ OffsetArrays → OffsetArraysAdaptExt 2.8 s ✓ ChainRulesCore 7.0 s ✓ Aqua 15.4 s ✓ SIMD 14.9 s ✓ StaticArrays 18.2 s ✓ Parsers 8.9 s ✓ Static 47.9 s ✓ JLD2 2.4 s ✓ Bzip2_jll 2.5 s ✓ XZ_jll 1.9 s ✓ Xorg_xtrans_jll 5.4 s ✓ IntelOpenMP_jll 2.4 s ✓ libpng_jll 5.2 s ✓ micromamba_jll 5.4 s ✓ oneTBB_jll 2.5 s ✓ Imath_jll 2.4 s ✓ LERC_jll 2.3 s ✓ Xorg_libXau_jll 2.3 s ✓ FFTW_jll 5.2 s ✓ pixi_jll 2.4 s ✓ Libiconv_jll 2.4 s ✓ Xorg_libXdmcp_jll 2.4 s ✓ Giflib_jll 2.3 s ✓ JpegTurbo_jll 35.0 s ✓ Polynomials 1.3 s ✓ ColorTypes → StyledStringsExt 1.1 s ✓ IntegralArrays 8.7 s ✓ Colors 4.1 s ✓ ColorVectorSpace 4.9 s ✓ StatsBase 1.4 s ✓ StructUtils → StructUtilsTablesExt 0.9 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.5 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1.6 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1.0 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 1.0 s ✓ Distances → DistancesChainRulesCoreExt 3.7 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.0 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4.5 s ✓ ArnoldiMethod 3.8 s ✓ CoordinateTransformations 1.8 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.9 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 2.0 s ✓ RegionTrees 5.7 s ✓ Rotations 1.8 s ✓ Adapt → AdaptStaticArraysExt 8.0 s ✓ JSON 1.3 s ✓ BitTwiddlingConvenienceFunctions 3.4 s ✓ CPUSummary 6.7 s ✓ StaticArrayInterface 5.7 s ✓ JLD2 → UnPackExt 2.6 s ✓ libzip_jll  Downloading artifact: micromamba 6.3 s ✓ MicroMamba  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 11.0 s ✓ MKL_jll 2.7 s ✓ OpenEXR_jll 2.4 s ✓ XML2_jll 2.5 s ✓ Xorg_libxcb_jll 2.6 s ✓ Ghostscript_jll 2.9 s ✓ Libtiff_jll 2.4 s ✓ libsixel_jll 3.3 s ✓ Polynomials → PolynomialsChainRulesCoreExt 5.4 s ✓ QOI 53.3 s ✓ TiffImages 2.3 s ✓ Graphics 32.3 s ✓ ImageCore 10.1 s ✓ ColorSchemes 8.5 s ✓ NearestNeighbors 10.5 s ✓ Graphs 4.9 s ✓ Interpolations 3.0 s ✓ HostCPUFeatures 2.3 s ✓ PolyesterWeave 1.5 s ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 2.0 s ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1.9 s ✓ CloseOpenIntervals 2.0 s ✓ LayoutPointers  Downloading artifact: pixi 11.7 s ✓ CondaPkg 7.9 s ✓ FFTW 5.8 s ✓ OpenEXR 2.7 s ✓ openbabel_jll 2.5 s ✓ Xorg_libX11_jll 2.6 s ✓ LittleCMS_jll 4.9 s ✓ ImageBase 8.1 s ✓ PNGFiles 10.2 s ✓ Sixel 8.6 s ✓ JpegTurbo 4.6 s ✓ Clustering 9.0 s ✓ MetaGraphs 4.2 s ✓ SimpleWeightedGraphs 4.7 s ✓ Graphs → GraphsSharedArraysExt 1.7 s ✓ TiledIteration 16.1 s ✓ VectorizationBase 21.5 s ✓ PythonCall 1.7 s ✓ FFTViews 3.9 s ✓ Polynomials → PolynomialsFFTWExt 2.6 s ✓ Xorg_libXext_jll 2.5 s ✓ OpenJpeg_jll 4.0 s ✓ HistogramThresholding 6.7 s ✓ ImageAxes 6.9 s ✓ ImageTransformations 8.5 s ✓ ImageShow 4.2 s ✓ SLEEFPirates 100.1 s ✓ ImageFiltering 2.8 s ✓ Libglvnd_jll 6.7 s ✓ ImageBinarization 4.8 s ✓ ImageMetadata 7.8 s ✓ ImageContrastAdjustment 41.5 s ✓ LoopVectorization 28.7 s ✓ ImageCorners 2.7 s ✓ libwebp_jll 7.8 s ✓ Netpbm 17.8 s ✓ ImageMorphology 9.2 s ✓ WebP 3.0 s ✓ ImageMagick_jll 6.9 s ✓ ImageDistances 16.7 s ✓ ImageSegmentation 5.1 s ✓ ImageIO 13.8 s ✓ ImageMagick 22.5 s ✓ ImageQualityIndexes 24.5 s ✓ Images ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] getproperty(x::Module, f::Symbol)  @ Base ./Base_compiler.jl:51  [2] _resolve_top_env(load_path::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:10  [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:823  [4] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:796  [5] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/env.jl:70  [6] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/context.jl:135  [7] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/C.jl:26  [8] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1605  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1593  [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1481  [11] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2283  [12] Dict{String, Int64}()  @ Base ./loading.jl:2178 [inlined]  [13] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2811  [14] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [15] macro expansion  @ ./loading.jl:2599 [inlined]  [16] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [17] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [18] require  @ ./loading.jl:2539 [inlined]  [19] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [20] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [21] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [22] top-level scope  @ ~/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:3  [23] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [24] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [25] top-level scope  @ stdin:5  [26] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [28] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [29] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [30] _start()  @ Base ./client.jl:593 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:1 in expression starting at stdin:5 ✗ MoleculeFlow ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("0907176b-47b3-4e96-be91-0e9bb91fb14f"), "MoleculeFlow") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/MoleculeDock/J1X2e/src/MoleculeDock.jl:3  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [17] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [19] _start()  @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/MoleculeDock/J1X2e/src/MoleculeDock.jl:1 in expression starting at stdin:5 ✗ MoleculeDock 210 dependencies successfully precompiled in 1110 seconds. 40 already precompiled. 3 dependencies had output during precompilation: ┌ MicroMamba │ Downloading artifact: micromamba └ ┌ CondaPkg │ Downloading artifact: pixi └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1131.6s ################################################################################ # Testing # Testing MoleculeDock Status `/tmp/jl_zYJ4il/Project.toml` [4c88cf16] Aqua v0.8.14 [63b6304e] MoleculeDock v0.1.0 [0907176b] MoleculeFlow v0.6.2 [deeba441] openbabel_jll v3.1.1+0 [56f22d72] Artifacts v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zYJ4il/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.24.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.26.1 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [992eb4ea] CondaPkg v0.2.34 [187b0558] ConstructionBase v1.6.0 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.19.0 [53c48c17] FixedPointNumbers v0.8.5 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.14.0 [076d061b] HashArrayMappedTries v0.2.0 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [cbc4b850] ImageBinarization v0.3.1 [f332f351] ImageContrastAdjustment v0.3.13 [a09fc81d] ImageCore v0.10.5 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 [6a3955dd] ImageFiltering v0.7.12 [82e4d734] ImageIO v0.6.9 [6218d12a] ImageMagick v1.4.2 [bc367c6b] ImageMetadata v0.9.10 [787d08f9] ImageMorphology v0.4.7 [2996bd0c] ImageQualityIndexes v0.3.7 [80713f31] ImageSegmentation v1.10.0 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.2 [916415d5] Images v0.26.2 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [1d092043] IntegralArrays v0.1.6 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.14 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.5.2 [b835a17e] JpegTurbo v0.1.6 [10f19ff3] LayoutPointers v0.1.17 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.3 ⌅ [626554b9] MetaGraphs v0.8.1 [0b3b1443] MicroMamba v0.1.15 [e1d29d7a] Missings v1.2.0 [63b6304e] MoleculeDock v0.1.0 [0907176b] MoleculeFlow v0.6.2 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.27 [f09324ee] Netpbm v1.1.1 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [f57f5aa1] PNGFiles v0.4.4 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.4 [fa939f87] Pidfile v1.3.0 [eebad327] PkgVersion v0.3.3 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.1.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [6099a3de] PythonCall v0.9.31 [4b34888f] QOI v1.0.2 [94ee1d12] Quaternions v0.7.7 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [dee08c22] RegionTrees v0.3.2 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [431bcebd] SciMLPublic v1.0.1 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [47aef6b3] SimpleWeightedGraphs v1.5.1 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [ec057cc2] StructUtils v2.8.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.5 [731e570b] TiffImages v0.11.9 [06e1c1a7] TiledIteration v0.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [e17b2a0c] UnsafePointers v1.0.0 [3d5dd08c] VectorizationBase v0.21.72 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [6e34b625] Bzip2_jll v1.0.9+0 [f5851436] FFTW_jll v3.3.12+0 [61579ee1] Ghostscript_jll v9.55.1+0 [59f7168a] Giflib_jll v5.2.3+0 [c73af94c] ImageMagick_jll v7.1.2023+0 [905a6f67] Imath_jll v3.2.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.5+0 [88015f11] LERC_jll v4.1.0+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [89763e89] Libtiff_jll v4.7.2+0 [d3a379c0] LittleCMS_jll v2.19.0+0 [856f044c] MKL_jll v2025.2.0+0 [18a262bb] OpenEXR_jll v3.4.9+0 [643b3616] OpenJpeg_jll v2.5.5+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.58+0 [075b6546] libsixel_jll v1.10.5+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [f8abcde7] micromamba_jll v2.3.1+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [deeba441] openbabel_jll v3.1.1+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] getproperty(x::Module, f::Symbol)  @ Base ./Base_compiler.jl:51  [2] _resolve_top_env(load_path::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:10  [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:823  [4] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:796  [5] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/env.jl:70  [6] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/context.jl:135  [7] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/C.jl:26  [8] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1605  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1593  [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1481  [11] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2283  [12] Dict{String, Int64}()  @ Base ./loading.jl:2178 [inlined]  [13] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2811  [14] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [15] macro expansion  @ ./loading.jl:2599 [inlined]  [16] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [17] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [18] require  @ ./loading.jl:2539 [inlined]  [19] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [20] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [21] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [22] top-level scope  @ ~/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:3  [23] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [24] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [25] top-level scope  @ stdin:5  [26] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [28] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [29] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [30] _start()  @ Base ./client.jl:593 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("0907176b-47b3-4e96-be91-0e9bb91fb14f"), "MoleculeFlow") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] top-level scope  @ ~/.julia/packages/MoleculeDock/J1X2e/src/MoleculeDock.jl:3  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [17] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:350  [19] _start()  @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/MoleculeDock/J1X2e/src/MoleculeDock.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ MoleculeDock │ [Output was shown above] └ ┌ MoleculeFlow │ ERROR: LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` │ Suggestion: check for spelling errors or missing imports. │ Stacktrace: │ [1] getproperty(x::Module, f::Symbol) │ @ Base ./Base_compiler.jl:51 │ [2] _resolve_top_env(load_path::Any) │ @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:10 │ [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) │ @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:823 │ [4] resolve() │ @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/resolve.jl:796 │ [5] envdir() │ @ CondaPkg ~/.julia/packages/CondaPkg/8GjrP/src/env.jl:70 │ [6] init_context() │ @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/context.jl:135 │ [7] __init__() │ @ PythonCall.C ~/.julia/packages/PythonCall/83z4q/src/C/C.jl:26 │ [8] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1605 │ [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1593 │ [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) │ @ Base ./loading.jl:1481 │ [11] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2283 │ [12] Dict{String, Int64}() │ @ Base ./loading.jl:2178 [inlined] │ [13] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2811 │ [14] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [15] macro expansion │ @ ./loading.jl:2599 [inlined] │ [16] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [17] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [18] require │ @ ./loading.jl:2539 [inlined] │ [19] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [20] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [21] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base ./module.jl:137 [inlined] │ [22] top-level scope │ @ ~/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:3 │ [23] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [24] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [25] top-level scope │ @ stdin:5 │ [26] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [28] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [29] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:350 │ [30] _start() │ @ Base ./client.jl:593 │ during initialization of module C │ in expression starting at /home/pkgeval/.julia/packages/MoleculeFlow/YBEW7/src/MoleculeFlow.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 2 packages failed to precompile: MoleculeDock Failed to precompile MoleculeDock [63b6304e-8562-42bf-81d2-e51868ec1191] to "/home/pkgeval/.julia/compiled/v1.14/MoleculeDock/jl_X4MtWJ" (ProcessExited(1)). MoleculeFlow Failed to precompile MoleculeFlow [0907176b-47b3-4e96-be91-0e9bb91fb14f] to "/home/pkgeval/.julia/compiled/v1.14/MoleculeFlow/jl_k4YdbC" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/MoleculeDock/J1X2e/test/runtests.jl:1 Testing failed after 31.58s ERROR: LoadError: Package MoleculeDock errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1264.47s: package fails to precompile