Package evaluation to test ExtXYZ on Julia 1.14.0-DEV.2172 (32456e37ae*) started at 2026-05-12T14:43:27.001 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 17.07s ################################################################################ # Installation # Installing ExtXYZ... Resolving package versions... Installed UnitfulAtomic ──── v1.0.0 Installed PeriodicTable ──── v1.2.1 Installed Unitful ────────── v1.28.0 Installed libcleri_jll ───── v0.12.1+3 Installed Requires ───────── v1.3.1 Installed StaticArraysCore ─ v1.4.4 Installed StaticArrays ───── v1.9.18 Installed PrecompileTools ── v1.3.3 Installed AtomsBase ──────── v0.5.2 Installed Preferences ────── v1.5.2 Installed JLLWrappers ────── v1.8.0 Installed ExtXYZ ─────────── v0.2.2 Installed extxyz_jll ─────── v0.1.3+0 Installing 2 artifacts Installed artifact extxyz 23.2 KiB Installed artifact libcleri 19.1 KiB Updating `~/.julia/environments/v1.14/Project.toml` [352459e4] + ExtXYZ v0.2.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [a963bdd2] + AtomsBase v0.5.2 [352459e4] + ExtXYZ v0.2.2 [692b3bcd] + JLLWrappers v1.8.0 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [cdc7adba] + libcleri_jll v0.12.1+3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 8.6s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 1.3 s ✓ StaticArraysCore 1.4 s ✓ Requires 35.9 s ✓ Unitful 1.6 s ✓ Preferences 2.6 s ✓ Unitful → PrintfExt 2.4 s ✓ JLLWrappers 1.3 s ✓ PrecompileTools 9.5 s ✓ UnitfulAtomic 6.6 s ✓ PeriodicTable 2.7 s ✓ libcleri_jll 15.4 s ✓ StaticArrays 2.6 s ✓ extxyz_jll 7.2 s ✓ AtomsBase 6.5 s ✓ AtomsBaseTesting 7.6 s ✓ ExtXYZ 15 dependencies successfully precompiled in 105 seconds. 30 already precompiled. Precompilation completed after 138.35s ################################################################################ # Testing # Testing ExtXYZ Status `/tmp/jl_5OzBv5/Project.toml` [a963bdd2] AtomsBase v0.5.2 [ed7c10db] AtomsBaseTesting v0.4.0 [352459e4] ExtXYZ v0.2.2 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5OzBv5/Manifest.toml` [a963bdd2] AtomsBase v0.5.2 [ed7c10db] AtomsBaseTesting v0.4.0 [352459e4] ExtXYZ v0.2.2 [692b3bcd] JLLWrappers v1.8.0 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [ae029012] Requires v1.3.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [6ecdc6fc] extxyz_jll v0.1.3+0 [cdc7adba] libcleri_jll v0.12.1+3 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... Failed to parse int natoms from ' ' AtomsBase -> IO -> Atoms: Test Failed at /home/pkgeval/.julia/packages/ExtXYZ/LO7ur/test/atomsbase.jl:11 Expression: all(position(sys1, :) .≈ position(sys2, :)) Evaluated: all(Bool[1, 0, 1, 1, 1]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] [2] simple_test_approx_eq(sys1::FlexibleSystem{3, Atom{3, Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}, Quantity{Float64, 𝐋 𝐓^-1, Unitful.FreeUnits{(m, s^-1), 𝐋 𝐓^-1, nothing}}, Quantity{Float64, 𝐌, Unitful.FreeUnits{(u,), 𝐌, nothing}}}, PeriodicCell{3, Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}, sys2::Atoms{@NamedTuple{species::Vector{ChemicalSpecies}, atomic_number::Vector{Int64}, position::Vector{Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}, magnetic_moment::Vector{Float64}, charge::Vector{Quantity{Float64, 𝐈 𝐓, Unitful.FreeUnits{(e,), 𝐈 𝐓, nothing}}}, vdw_radius::Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}, mass::Vector{Quantity{Float64, 𝐌, Unitful.FreeUnits{(u,), 𝐌, nothing}}}, covalent_radius::Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}, atomic_symbol::Vector{Symbol}, velocity::Vector{Vector{Quantity{Float64, 𝐋 𝐓^-1, Unitful.FreeUnits{(u^-1/2, eV^1/2), 𝐋 𝐓^-1, nothing}}}}}, @NamedTuple{multiplicity::Int32, periodicity::Tuple{Bool, Bool, Bool}, charge::Quantity{Int32, 𝐈 𝐓, Unitful.FreeUnits{(e,), 𝐈 𝐓, nothing}}, extra_data::Int32, cell_vectors::Vector{Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}}}; test_cell::Bool) @ Main ~/.julia/packages/ExtXYZ/LO7ur/test/atomsbase.jl:11 [3] simple_test_approx_eq(sys1::FlexibleSystem{3, Atom{3, Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}, Quantity{Float64, 𝐋 𝐓^-1, Unitful.FreeUnits{(m, s^-1), 𝐋 𝐓^-1, nothing}}, Quantity{Float64, 𝐌, Unitful.FreeUnits{(u,), 𝐌, nothing}}}, PeriodicCell{3, Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}, sys2::Atoms{@NamedTuple{species::Vector{ChemicalSpecies}, atomic_number::Vector{Int64}, position::Vector{Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}, magnetic_moment::Vector{Float64}, charge::Vector{Quantity{Float64, 𝐈 𝐓, Unitful.FreeUnits{(e,), 𝐈 𝐓, nothing}}}, vdw_radius::Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}, mass::Vector{Quantity{Float64, 𝐌, Unitful.FreeUnits{(u,), 𝐌, nothing}}}, covalent_radius::Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}, atomic_symbol::Vector{Symbol}, velocity::Vector{Vector{Quantity{Float64, 𝐋 𝐓^-1, Unitful.FreeUnits{(u^-1/2, eV^1/2), 𝐋 𝐓^-1, nothing}}}}}, @NamedTuple{multiplicity::Int32, periodicity::Tuple{Bool, Bool, Bool}, charge::Quantity{Int32, 𝐈 𝐓, Unitful.FreeUnits{(e,), 𝐈 𝐓, nothing}}, extra_data::Int32, cell_vectors::Vector{Vector{Quantity{Float64, 𝐋, Unitful.FreeUnits{(Å,), 𝐋, nothing}}}}}}) @ Main ~/.julia/packages/ExtXYZ/LO7ur/test/atomsbase.jl:10 [4] top-level scope @ ~/.julia/packages/ExtXYZ/LO7ur/test/atomsbase.jl:105 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [6] macro expansion @ ~/.julia/packages/ExtXYZ/LO7ur/test/atomsbase.jl:112 [inlined] ┌ Warning: 'pbc' ignored since no 'cell' entry found in dict. └ @ ExtXYZ ~/.julia/packages/ExtXYZ/LO7ur/src/atoms.jl:160 ┌ Warning: 'pbc' ignored since no 'cell' entry found in dict. └ @ ExtXYZ ~/.julia/packages/ExtXYZ/LO7ur/src/atoms.jl:160 Test Summary: | Pass Fail Total Time ExtXYZ.jl | 80 1 81 1m42.9s Dictionary interface | 21 21 12.9s Conversion AtomsBase -> Atoms | 9 9 26.9s Conversion AtomsBase -> dict (velocity) | 16 16 7.3s Conversion AtomsBase -> dict (no velocity) | 1 1 3.3s Defaults dict -> Atoms | 5 5 6.2s Warning about setting invalid data | 3 3 3.9s AtomsBase -> IO -> Atoms | 8 1 9 14.1s Extra variables for atoms | 8 8 4.2s AtomsBase missing cell | 1 1 1.6s AtomsBase isolated system | 8 8 7.5s RNG of the outermost testset: Random.Xoshiro(0x2e3dcdcdde1e6616, 0x8c467d630f90a60e, 0x8e7b536f9a365ff9, 0xcfcbf584f59a2d69, 0x4a0d9dc7c71775fc) ERROR: LoadError: Some tests did not pass: 80 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ExtXYZ/LO7ur/test/runtests.jl:3 Testing failed after 115.91s ERROR: LoadError: Package ExtXYZ errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 299.96s: package has test failures