Package evaluation to test BioFetch on Julia 1.14.0-DEV.2168 (2569364ac4*) started at 2026-05-10T20:05:29.058


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.47s


################################################################################
# Installation
#

Installing BioFetch...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [f8217676] + BioFetch v0.2.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [67c07d97] + Automa v1.1.0
  [f8217676] + BioFetch v0.2.1
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.1
  [a0d4ced5] + BioServices v0.4.1
  [3c28c6f8] + BioSymbols v5.2.0
  [d1d4a3ce] + BitFlags v0.1.9
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [f0e56b4a] + ConcurrentUtilities v2.5.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.2
  [864edb3b] + DataStructures v0.19.4
  [e2d170a0] + DataValueInterfaces v1.0.0
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [8f5d6c58] + EzXML v1.2.3
  [c2308a5c] + FASTX v2.1.7
⌅ [4f8a0a0a] + GenomicAnnotations v0.3.8
  [708ec375] + Gumbo v0.8.3
  [cd3eb016] + HTTP v1.11.0
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.8.0
⌅ [682c06a0] + JSON v0.21.4
  [b964fa9f] + LaTeXStrings v1.4.0
  [e6f89c97] + LoggingExtras v1.2.0
  [739be429] + MbedTLS v1.1.10
  [e1d29d7a] + Missings v1.2.0
  [4d8831e6] + OpenSSL v1.6.1
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.4
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.2
  [08abe8d2] + PrettyTables v3.3.2
  [189a3867] + Reexport v1.2.2
  [fdea26ae] + SIMD v3.7.2
  [91c51154] + SentinelArrays v1.4.9
  [777ac1f9] + SimpleBufferStream v1.2.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [10745b16] + Statistics v1.11.1
  [892a3eda] + StringManipulation v0.4.4
  [354b36f9] + StringViews v1.3.7
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
⌅ [3bb67fe8] + TranscodingStreams v0.10.10
  [7200193e] + Twiddle v1.1.2
  [5c2747f8] + URIs v1.6.1
  [228000da] + XMLDict v0.4.1
  [528830af] + Gumbo_jll v0.10.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [c8ffd9c3] + MbedTLS_jll v2.28.1010+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0
  [deac9b47] + LibCURL_jll v8.19.0+0
  [e37daf67] + LibGit2_jll v1.9.3+0
  [29816b5a] + LibSSH2_jll v1.11.101+0
  [14a3606d] + MozillaCACerts_jll v2026.3.19
  [4536629a] + OpenBLAS_jll v0.3.33+0
  [458c3c95] + OpenSSL_jll v3.5.6+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.69.0+0
  [3f19e933] + p7zip_jll v17.8.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.81s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
   5.1 s  ✓ BioGenerics
  19.1 s  ✓ Automa
  25.7 s  ✓ HTTP
   8.5 s  ✓ GenomicAnnotations
  19.3 s  ✓ FASTX
   4.4 s  ✓ BioServices
   2.6 s  ✓ FASTX → BioSequencesExt
  12.9 s  ✓ BioFetch
  8 dependencies successfully precompiled in 100 seconds. 87 already precompiled.

Precompilation completed after 120.5s


################################################################################
# Testing
#

     Testing BioFetch
      Status `/tmp/jl_hUBERc/Project.toml`
  [f8217676] BioFetch v0.2.1
  [a0d4ced5] BioServices v0.4.1
  [c2308a5c] FASTX v2.1.7
⌅ [4f8a0a0a] GenomicAnnotations v0.3.8
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_hUBERc/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [67c07d97] Automa v1.1.0
  [f8217676] BioFetch v0.2.1
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.1
  [a0d4ced5] BioServices v0.4.1
  [3c28c6f8] BioSymbols v5.2.0
  [d1d4a3ce] BitFlags v0.1.9
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.18.1
  [f0e56b4a] ConcurrentUtilities v2.5.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.2
  [864edb3b] DataStructures v0.19.4
  [e2d170a0] DataValueInterfaces v1.0.0
  [460bff9d] ExceptionUnwrapping v0.1.11
  [8f5d6c58] EzXML v1.2.3
  [c2308a5c] FASTX v2.1.7
⌅ [4f8a0a0a] GenomicAnnotations v0.3.8
  [708ec375] Gumbo v0.8.3
  [cd3eb016] HTTP v1.11.0
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.8.0
⌅ [682c06a0] JSON v0.21.4
  [b964fa9f] LaTeXStrings v1.4.0
  [e6f89c97] LoggingExtras v1.2.0
  [739be429] MbedTLS v1.1.10
  [e1d29d7a] Missings v1.2.0
  [4d8831e6] OpenSSL v1.6.1
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.4
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.2
  [08abe8d2] PrettyTables v3.3.2
  [189a3867] Reexport v1.2.2
  [fdea26ae] SIMD v3.7.2
  [91c51154] SentinelArrays v1.4.9
  [777ac1f9] SimpleBufferStream v1.2.0
  [a2af1166] SortingAlgorithms v1.2.2
  [10745b16] Statistics v1.11.1
  [892a3eda] StringManipulation v0.4.4
  [354b36f9] StringViews v1.3.7
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
⌅ [3bb67fe8] TranscodingStreams v0.10.10
  [7200193e] Twiddle v1.1.2
  [5c2747f8] URIs v1.6.1
  [228000da] XMLDict v0.4.1
  [528830af] Gumbo_jll v0.10.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [02c8fc9c] XML2_jll v2.15.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.1+0
  [deac9b47] LibCURL_jll v8.19.0+0
  [e37daf67] LibGit2_jll v1.9.3+0
  [29816b5a] LibSSH2_jll v1.11.101+0
  [14a3606d] MozillaCACerts_jll v2026.3.19
  [4536629a] OpenBLAS_jll v0.3.33+0
  [458c3c95] OpenSSL_jll v3.5.6+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.69.0+0
  [3f19e933] p7zip_jll v17.8.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: HTTP.Exceptions.StatusError(400, "POST", "/entrez/eutils/efetch.fcgi", HTTP.Messages.Response:
"""
HTTP/1.1 400 Bad Request
Date: Sun, 10 May 2026 20:08:52 GMT
Server: Finatra
Strict-Transport-Security: max-age=31536000; includeSubDomains; preload
Content-Security-Policy: upgrade-insecure-requests
Referrer-Policy: origin-when-cross-origin
Ncbi-Sid: 9D82F609A08A3ACE_B543SID
Ncbi-Phid: 1D347B25C9753EC500004F301811C4DE.1.1.m_5
Content-Type: text/plain; charset=UTF-8
Cache-Control: private
Content-Encoding: gzip
X-Ratelimit-Limit: 3
X-Ratelimit-Remaining: 0
Access-Control-Allow-Origin: *
Access-Control-Expose-Headers: X-RateLimit-Limit,X-RateLimit-Remaining
Set-Cookie: ******
X-Ua-Compatible: IE=Edge
X-Xss-Protection: 1; mode=block
Via: 1.1 google
Alt-Svc: clear
Transfer-Encoding: chunked

+Error%3A+CEFetchPApplication%3A%3Aproxy_stream()%3A+-3.6%0A++++++++++++++++++++++++++++++++++++++++++++C182.7,97.4,189.2,93.7,192.9,88.1z%22%3E%3C%2Fpath%3E%0A++++++++++++++++++++++%3C%2Fg%3E%0A++++++++++++++++++++%3C%2Fg%3E%0A++++++++++++++++++++%3Ccircle+class%3D%22st30%22+cx%3D%22124.4%22+cy%3D%22128.8%22+r%3D%22108.2%22%3E%3C%2Fcircle%3E%0A++++++++++++++++++%3C%2Fg%3E%0A++++++++++++++++%3C%2Fsvg%3E%3C%2Fa%3E%3C%2Fli%3E%0A++++++++++++%3Cli+class%3D%22list-inline-item%22%3E%3Ca+href%3D%22https%3A%2F%2Fwww.facebook.com%2Fnationallibraryofmedicine%22%0A++++++++++++++++aria-label%3D%22Facebook%22+rel%3D%22noopener+noreferrer%22+target%3D%22_blank%22%3E%0A++++++++++++++++%3Csvg+version%3D%221.1%22+xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22+xmlns%3Axlink%3D%22http%3A%2F%2Fwww.w3.org%2F1999%2Fxlink%22+x%3D%220px%22%0A++++++++++++++++++y%3D%220px%22+viewBox%3D%220+0+249+249%22+style%3D%22enable-background%3Anew+0+0+249+249%3B%22+xml%3Aspace%3D%22preserve%22%3E%0A++++++++++++++++++%
⋮
8468-byte body
""")
Stacktrace:
  [1] request(method::String, URL::String, headers::Vector{Pair{String, String}}; params::@Kwargs{body::String, retry_non_idempotent::Bool})
    @ BioServices ~/.julia/packages/BioServices/EkekK/src/common.jl:36
  [2] request
    @ ~/.julia/packages/BioServices/EkekK/src/common.jl:4 [inlined]
  [3] efetch(ctx::Dict{Symbol, Any}; params::@Kwargs{db::String, id::String, rettype::String, retmode::String, strand::Int64})
    @ BioServices.EUtils ~/.julia/packages/BioServices/EkekK/src/eutils.jl:127
  [4] getindex(h::Dict{Int32, Symbol}, key::Int32)
    @ Base ~/.julia/packages/BioServices/EkekK/src/eutils.jl:124 [inlined]
  [5] Symbol(x::SeqFormat)
    @ Base.Enums ~/.julia/packages/BioServices/EkekK/src/eutils.jl:124 [inlined]
  [6] fetchseq_ncbi(ids::String, db::String; format::SeqFormat, range::Nothing, revstrand::Bool)
    @ BioFetch ~/.julia/packages/BioFetch/KUzgG/src/BioFetch.jl:79
  [7] startswith(s::String, r::Regex)
    @ Base ~/.julia/packages/BioFetch/KUzgG/src/BioFetch.jl:76 [inlined]
  [8] fetchseq(id::String, range::Nothing, revstrand::Bool; format::SeqFormat)
    @ BioFetch ~/.julia/packages/BioFetch/KUzgG/src/BioFetch.jl:67
  [9] fetchseq
    @ ~/.julia/packages/BioFetch/KUzgG/src/BioFetch.jl:61 [inlined]
 [10] fetchseq(id::String)
    @ BioFetch ~/.julia/packages/BioFetch/KUzgG/src/BioFetch.jl:61
 [11] top-level scope
    @ ~/.julia/packages/BioFetch/KUzgG/test/runtests.jl:3
 [12] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:327
 [13] top-level scope
    @ none:6
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
 [15] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:318
 [16] _start()
    @ Base ./client.jl:593
in expression starting at /home/pkgeval/.julia/packages/BioFetch/KUzgG/test/runtests.jl:3

Testing failed after 61.44s

ERROR: LoadError: Package BioFetch errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162
  [3] Cmd(cmd::Cmd)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
  [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:352
 [12] _start()
    @ Base ./client.jl:593
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 229.06s: package tests unexpectedly errored