Package evaluation to test SBMLToolkit on Julia 1.14.0-DEV.2130 (8560e32f58*) started at 2026-05-08T02:33:22.663 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.41s ################################################################################ # Installation # Installing SBMLToolkit... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [86080e66] + SBMLToolkit v0.1.33 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [6e696c72] + AbstractPlutoDingetjes v1.3.2 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [e2ed5e7c] + Bijections v0.2.2 [caf10ac8] + BipartiteGraphs v0.1.7 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.12.1 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v16.1.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [864edb3b] + DataStructures v0.19.4 [85a47980] + Dictionaries v0.4.6 ⌅ [2b5f629d] + DiffEqBase v6.218.0 [459566f4] + DiffEqCallbacks v4.17.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.17 [8d63f2c5] + DispatchDoctor v0.4.28 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [5b8099bc] + DomainSets v0.7.18 [7c1d4256] + DynamicPolynomials v0.6.6 [06fc5a27] + DynamicQuantities v1.12.3 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.20 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.3.2 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.31.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.3 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.8.0 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [615f187c] + IfElse v0.1.1 ⌃ [3263718b] + ImplicitDiscreteSolve v1.11.0 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.28.0 [ba0b0d4f] + Krylov v0.10.6 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.9 [7ed4a6bd] + LinearSolve v3.75.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [961ee093] + ModelingToolkit v11.25.0 [7771a370] + ModelingToolkitBase v1.34.1 [6bb917b9] + ModelingToolkitTearing v1.13.4 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.7.1 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v2.25.0 [5959db7a] + NonlinearSolveFirstOrder v2.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 ⌅ [bbf590c4] + OrdinaryDiffEqCore v3.33.1 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.54.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [e5567a89] + SBML v1.6.0 [86080e66] + SBMLToolkit v0.1.33 [9dfe8606] + SCCNonlinearSolve v1.13.0 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v2.155.1 [19f34311] + SciMLJacobianOperators v0.1.13 ⌅ [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.18.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.11.1 [699a6c99] + SimpleTraits v0.9.5 [276daf66] + SpecialFunctions v2.7.2 [0c0c59c1] + StarAlgebras v0.3.0 [64909d44] + StateSelection v1.9.2 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [7792a7ef] + StrideArraysCore v0.5.9 [2efcf032] + SymbolicIndexingInterface v0.3.47 [19f23fe9] + SymbolicLimits v1.1.0 [d1185830] + SymbolicUtils v4.28.0 [0c5d862f] + Symbolics v7.22.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [d30d5f5c] + WeakCacheSets v0.1.0 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [bb12108a] + SBML_jll v5.21.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 5.9 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 60.2 s ✓ Symbolics 5.5 s ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 12.6 s ✓ NonlinearSolve → NonlinearSolveSundialsExt 13.9 s ✓ OrdinaryDiffEqDifferentiation 22.8 s ✓ Plots → UnitfulExt 15.1 s ✓ Symbolics → SymbolicsForwardDiffExt 13.9 s ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 8.5 s ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 14.7 s ✓ Symbolics → SymbolicsPreallocationToolsExt 14.8 s ✓ OrdinaryDiffEqExtrapolation 43.1 s ✓ OrdinaryDiffEqRosenbrock 14.8 s ✓ OrdinaryDiffEqExponentialRK 17.1 s ✓ OrdinaryDiffEqNonlinearSolve 308.9 s ✓ ModelingToolkit 63.1 s ✓ OrdinaryDiffEqFIRK 16.6 s ✓ OrdinaryDiffEqIMEXMultistep 15.6 s ✓ OrdinaryDiffEqStabilizedIRK 16.9 s ✓ OrdinaryDiffEqPDIRK 18.1 s ✓ OrdinaryDiffEqSDIRK 88.5 s ✓ Catalyst 34.0 s ✓ OrdinaryDiffEqBDF 66.4 s ✓ SBMLToolkit 74.2 s ✓ OrdinaryDiffEqDefault 26.7 s ✓ OrdinaryDiffEq 146.6 s ✓ SBMLToolkitTestSuite 26 dependencies successfully precompiled in 1146 seconds. 478 already precompiled. Precompilation completed after 1163.59s ################################################################################ # Testing # Testing SBMLToolkit Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_bL4Tf2/Project.toml` [4c88cf16] + Aqua v0.8.14 [336ed68f] + CSV v0.10.16 ⌃ [479239e8] ↓ Catalyst v16.1.1 ⇒ v15.0.11 [a93c6f00] + DataFrames v1.8.2 [7d51a73a] + ExplicitImports v1.15.0 ⌅ [961ee093] ↓ ModelingToolkit v11.25.0 ⇒ v9.84.0 ⌅ [1dea7af3] + OrdinaryDiffEq v6.107.0 [91a5bcdd] + Plots v1.41.6 [86080e66] + SBMLToolkit v0.1.33 ⌅ [792e603a] + SBMLToolkitTestSuite v0.0.5 [1bc83da4] + SafeTestsets v0.1.0 ⌅ [c3572dad] + Sundials v4.28.0 ⌅ [d1185830] ↓ SymbolicUtils v4.28.0 ⇒ v3.32.0 ⌅ [0c5d862f] ↓ Symbolics v7.22.0 ⇒ v6.58.0 Updating `/tmp/jl_bL4Tf2/Manifest.toml` [6e696c72] - AbstractPlutoDingetjes v1.3.2 [66dad0bd] + AliasTables v1.1.3 [4c88cf16] + Aqua v0.8.14 [aae01518] - BandedMatrices v1.11.0 [caf10ac8] - BipartiteGraphs v0.1.7 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.16 ⌃ [479239e8] ↓ Catalyst v16.1.1 ⇒ v15.0.11 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 ⌅ [a80b9123] + CommonMark v0.10.3 [f0e56b4a] + ConcurrentUtilities v2.5.1 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] ↓ DataStructures v0.19.4 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] - Dictionaries v0.4.6 ⌅ [2b5f629d] ↓ DiffEqBase v6.218.0 ⇒ v6.213.0 [77a26b50] + DiffEqNoiseProcess v5.31.0 [31c24e10] + Distributions v0.25.125 ⌃ [7c1d4256] ↓ DynamicPolynomials v0.6.6 ⇒ v0.6.3 [460bff9d] + ExceptionUnwrapping v0.1.11 [7d51a73a] + ExplicitImports v1.15.0 [d4d017d3] + ExponentialUtilities v1.30.0 [c87230d0] + FFMPEG v0.4.5 ⌅ [7034ab61] ↓ FastBroadcast v1.3.2 ⇒ v0.3.5 [442a2c76] + FastGaussQuadrature v1.1.0 [48062228] + FilePathsBase v0.9.24 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [77dc65aa] ↓ FunctionWrappersWrappers v1.8.0 ⇒ v0.1.3 [28b8d3ca] + GR v0.73.24 [c145ed77] + GenericSchur v0.5.6 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] ↓ Graphs v1.14.0 ⇒ v1.13.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.11.0 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] - ImplicitDiscreteSolve v1.11.0 [313cdc1a] - Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v1.5.2 [98e50ef6] + JuliaFormatter v2.3.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 ⌃ [ccbc3e58] ↓ JumpProcesses v9.28.0 ⇒ v9.23.2 [d3d80556] + LineSearches v7.6.2 [d8e11817] + MLStyle v0.4.17 [739be429] + MbedTLS v1.1.10 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] ↓ ModelingToolkit v11.25.0 ⇒ v9.84.0 [7771a370] - ModelingToolkitBase v1.34.1 [6bb917b9] - ModelingToolkitTearing v1.13.4 ⌃ [102ac46a] ↓ MultivariatePolynomials v0.5.19 ⇒ v0.5.9 [d41bc354] + NLSolversBase v8.0.0 ⌃ [8913a72c] + NonlinearSolve v4.16.0 ⌃ [be0214bd] ↓ NonlinearSolveBase v2.25.0 ⇒ v2.11.2 ⌃ [5959db7a] ↓ NonlinearSolveFirstOrder v2.1.1 ⇒ v2.0.0 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 ⌃ [26075421] + NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] + OpenSSL v1.6.1 ⌅ [1dea7af3] + OrdinaryDiffEq v6.107.0 ⌅ [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.10.0 ⌅ [6ad6398a] + OrdinaryDiffEqBDF v1.14.0 ⌅ [bbf590c4] ↓ OrdinaryDiffEqCore v3.33.1 ⇒ v3.1.0 ⌅ [50262376] + OrdinaryDiffEqDefault v1.14.0 ⌅ [4302a76b] + OrdinaryDiffEqDifferentiation v1.22.0 ⌅ [9286f039] + OrdinaryDiffEqExplicitRK v1.10.0 ⌅ [e0540318] + OrdinaryDiffEqExponentialRK v1.12.0 ⌅ [becaefa8] + OrdinaryDiffEqExtrapolation v1.13.0 ⌅ [5960d6e9] + OrdinaryDiffEqFIRK v1.20.0 ⌅ [101fe9f7] + OrdinaryDiffEqFeagin v1.9.0 ⌅ [d3585ca7] + OrdinaryDiffEqFunctionMap v1.10.0 ⌅ [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.10.0 ⌅ [9f002381] + OrdinaryDiffEqIMEXMultistep v1.11.0 ⌅ [521117fe] + OrdinaryDiffEqLinear v1.11.0 ⌅ [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 ⌅ [b0944070] + OrdinaryDiffEqLowStorageRK v1.11.0 ⌅ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.19.0 ⌅ [c9986a66] + OrdinaryDiffEqNordsieck v1.8.0 ⌅ [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.10.0 ⌅ [5b33eab2] + OrdinaryDiffEqPRK v1.9.0 ⌅ [04162be5] + OrdinaryDiffEqQPRK v1.9.0 ⌅ [af6ede74] + OrdinaryDiffEqRKN v1.11.0 ⌅ [43230ef6] + OrdinaryDiffEqRosenbrock v1.22.0 ⌅ [2d112036] + OrdinaryDiffEqSDIRK v1.11.0 ⌅ [669c94d9] + OrdinaryDiffEqSSPRK v1.12.0 ⌅ [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.10.0 ⌅ [358294b1] + OrdinaryDiffEqStabilizedRK v1.9.0 ⌅ [fa646aed] + OrdinaryDiffEqSymplecticRK v1.12.0 ⌅ [b1df2697] + OrdinaryDiffEqTsit5 v1.10.0 ⌅ [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.4 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.6 [2dfb63ee] + PooledArrays v1.4.3 ⌃ [d236fae5] ↓ PreallocationTools v1.2.0 ⇒ v0.4.34 [08abe8d2] + PrettyTables v3.3.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [988b38a3] - ReadOnlyArrays v0.2.0 [795d4caa] - ReadOnlyDicts v1.0.1 [01d81517] + RecipesPipeline v0.6.12 ⌅ [731186ca] ↓ RecursiveArrayTools v3.54.0 ⇒ v3.50.0 [05181044] + RelocatableFolders v1.0.1 [ae5879a3] + ResettableStacks v1.2.0 [79098fc4] + Rmath v0.9.0 [86080e66] + SBMLToolkit v0.1.33 ⌅ [792e603a] + SBMLToolkitTestSuite v0.0.5 [1bc83da4] + SafeTestsets v0.1.0 ⌅ [0bca4576] ↓ SciMLBase v2.155.1 ⇒ v2.153.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 ⌃ [727e6d20] ↓ SimpleNonlinearSolve v2.11.1 ⇒ v2.11.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.27 [860ef19b] + StableRNGs v1.0.4 [0c0c59c1] - StarAlgebras v0.3.0 [64909d44] - StateSelection v1.9.2 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.1 ⌅ [c3572dad] + Sundials v4.28.0 ⌅ [19f23fe9] ↓ SymbolicLimits v1.1.0 ⇒ v0.2.3 ⌅ [d1185830] ↓ SymbolicUtils v4.28.0 ⇒ v3.32.0 ⌅ [0c5d862f] ↓ Symbolics v7.22.0 ⇒ v6.58.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [a7c27f48] + Unityper v0.1.6 [41fe7b60] + Unzip v0.2.0 [d30d5f5c] - WeakCacheSets v0.1.0 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.6+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.8.0+0 [b22a6f82] + FFMPEG_jll v8.1.0+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.1+1 [d2c73de3] + GR_jll v0.73.24+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.3+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.42.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [e7412a2a] + Ogg_jll v1.3.6+0 [91d4177d] + Opus_jll v1.6.1+0 [36c8627f] + Pango_jll v1.57.1+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [c0090381] + Qt6Base_jll v6.10.2+1 [629bc702] + Qt6Declarative_jll v6.10.2+1 [ce943373] + Qt6ShaderTools_jll v6.10.2+1 [6de9746b] + Qt6Svg_jll v6.10.2+0 [e99dba38] + Qt6Wayland_jll v6.10.2+1 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.3+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.47.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.3+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [8e53e030] + libdrm_jll v2.4.125+1 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_bL4Tf2/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.16 ⌃ [479239e8] Catalyst v15.0.11 [a93c6f00] DataFrames v1.8.2 [7d51a73a] ExplicitImports v1.15.0 ⌅ [961ee093] ModelingToolkit v9.84.0 ⌅ [1dea7af3] OrdinaryDiffEq v6.107.0 [91a5bcdd] Plots v1.41.6 [e5567a89] SBML v1.6.0 [86080e66] SBMLToolkit v0.1.33 ⌅ [792e603a] SBMLToolkitTestSuite v0.0.5 [1bc83da4] SafeTestsets v0.1.0 ⌅ [c3572dad] Sundials v4.28.0 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.58.0 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_bL4Tf2/Manifest.toml` [47edcb42] ADTypes v1.22.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.24.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.12.1 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 ⌃ [479239e8] Catalyst v15.0.11 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 ⌅ [861a8166] Combinatorics v1.0.2 ⌅ [a80b9123] CommonMark v0.10.3 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [2b5f629d] DiffEqBase v6.213.0 [459566f4] DiffEqCallbacks v4.17.0 [77a26b50] DiffEqNoiseProcess v5.31.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.17 [8d63f2c5] DispatchDoctor v0.4.28 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 ⌅ [5b8099bc] DomainSets v0.7.18 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.12.3 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [460bff9d] ExceptionUnwrapping v0.1.11 [7d51a73a] ExplicitImports v1.15.0 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.5 ⌅ [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v1.8.0 [6a86dc24] FiniteDiff v2.31.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.3 [a85aefff] FunctionMaps v0.1.2 [069b7b12] FunctionWrappers v1.1.3 ⌅ [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.24 [c145ed77] GenericSchur v0.5.6 [c27321d9] Glob v1.4.0 ⌃ [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.11.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.2 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.3.0 ⌅ [70703baa] JuliaSyntax v0.4.10 ⌃ [ccbc3e58] JumpProcesses v9.23.2 [ba0b0d4f] Krylov v0.10.6 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [87fe0de2] LineSearch v0.1.9 [d3d80556] LineSearches v7.6.2 [7ed4a6bd] LinearSolve v3.75.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.10 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.84.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.7.1 [d41bc354] NLSolversBase v8.0.0 [77ba4419] NaNMath v1.1.3 ⌃ [8913a72c] NonlinearSolve v4.16.0 ⌃ [be0214bd] NonlinearSolveBase v2.11.2 ⌃ [5959db7a] NonlinearSolveFirstOrder v2.0.0 ⌃ [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 ⌃ [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 ⌅ [1dea7af3] OrdinaryDiffEq v6.107.0 ⌅ [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.10.0 ⌅ [6ad6398a] OrdinaryDiffEqBDF v1.14.0 ⌅ [bbf590c4] OrdinaryDiffEqCore v3.1.0 ⌅ [50262376] OrdinaryDiffEqDefault v1.14.0 ⌅ [4302a76b] OrdinaryDiffEqDifferentiation v1.22.0 ⌅ [9286f039] OrdinaryDiffEqExplicitRK v1.10.0 ⌅ [e0540318] OrdinaryDiffEqExponentialRK v1.12.0 ⌅ [becaefa8] OrdinaryDiffEqExtrapolation v1.13.0 ⌅ [5960d6e9] OrdinaryDiffEqFIRK v1.20.0 ⌅ [101fe9f7] OrdinaryDiffEqFeagin v1.9.0 ⌅ [d3585ca7] OrdinaryDiffEqFunctionMap v1.10.0 ⌅ [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.10.0 ⌅ [9f002381] OrdinaryDiffEqIMEXMultistep v1.11.0 ⌅ [521117fe] OrdinaryDiffEqLinear v1.11.0 ⌅ [1344f307] OrdinaryDiffEqLowOrderRK v1.10.0 ⌅ [b0944070] OrdinaryDiffEqLowStorageRK v1.11.0 ⌅ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.19.0 ⌅ [c9986a66] OrdinaryDiffEqNordsieck v1.8.0 ⌅ [5dd0a6cf] OrdinaryDiffEqPDIRK v1.10.0 ⌅ [5b33eab2] OrdinaryDiffEqPRK v1.9.0 ⌅ [04162be5] OrdinaryDiffEqQPRK v1.9.0 ⌅ [af6ede74] OrdinaryDiffEqRKN 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[8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Cannot separate bidirectional kineticLaw `k1 - s1s2(t) - k1*s2(t)` to forward and reverse part. Setting forward to `k1 - s1s2(t) - k1*s2(t)` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/reactions.jl:53 ┌ Warning: Cannot separate bidirectional kineticLaw `k1` to forward and reverse part. Setting forward to `k1` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/reactions.jl:39 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 [ Info: Case 00007 done with a code 6 and error msg: [ Info: ("00007", false, true, "", 6, SciMLBase.ReturnCode.Success) [ Info: Case 00022 done with a code 6 and error msg: [ Info: ("00022", false, true, "", 6, SciMLBase.ReturnCode.Success) [ Info: Case 00023 done with a code 6 and error msg: [ Info: ("00023", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 [ Info: Case 00041 done with a code 6 and error msg: [ Info: ("00041", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: Initialization system is overdetermined. 1 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00140 done with a code 6 and error msg: [ Info: ("00140", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: Initialization system is overdetermined. 3 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00170 done with a code 6 and error msg: [ Info: ("00170", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: Initialization system is overdetermined. 2 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00325 done with a code 6 and error msg: [ Info: ("00325", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 ┌ Warning: Initialization system is overdetermined. 1 equations for 0 unknowns. Initialization will default to using least squares. `SCCNonlinearProblem` can only be used for initialization of fully determined systems and hence will not be used here. To suppress this warning pass warn_initialize_determined = false. To make this warning into an error, pass fully_determined = true └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1522 [ Info: Case 00679 done with a code 6 and error msg: [ Info: ("00679", false, true, "", 6, SciMLBase.ReturnCode.Success) ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/events.jl:36 [ Info: Case 00944 done with a code 6 and error msg: [ Info: ("00944", false, true, "", 6, SciMLBase.ReturnCode.Success) 9×6 DataFrame Row │ case expected_err res error k diffeq_retcode │ String Bool Bool String Int64 Any ─────┼─────────────────────────────────────────────────────────── 1 │ 00007 false true 6 Success 2 │ 00022 false true 6 Success 3 │ 00023 false true 6 Success 4 │ 00041 false true 6 Success 5 │ 00140 false true 6 Success 6 │ 00170 false true 6 Success 7 │ 00325 false true 6 Success 8 │ 00679 false true 6 Success 9 │ 00944 false true 6 Success┌ Warning: SBML SpeciesReferences does not contain stoichiometries. Assuming stoichiometry of 1. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/reactions.jl:107 ┌ Warning: Stoichiometries of SpeciesReferences are not defined. Setting to 1. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/sZPaA/src/reactions.jl:132 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 91 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm12MachineInstr10opIsRegDefERKNS_14MachineOperandE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000079273b89cb50 Total snapshots: 523. Utilization: 0% ╎523 @Base/task.jl:1168 wait_forever() 522╎ 523 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:44 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 28059802 (Pool: 28058865; Big: 937); GC: 27 [91] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLToolkit/sZPaA/test/wuschel.jl:19 _ZNK12_GLOBAL__N_114MachineSinking22GetAllSortedSuccessorsERN4llvm12MachineInstrEPNS1_17MachineBasicBlockERNS1_13SmallDenseMapIS5_NS1_11SmallVectorIS5_Lj4EEELj4ENS1_12DenseMapInfoIS5_vEENS1_6detail12DenseMapPairIS5_S8_EEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_114MachineSinking16FindSuccToSinkToERN4llvm12MachineInstrEPNS1_17MachineBasicBlockERbRNS1_13SmallDenseMapIS5_NS1_11SmallVectorIS5_Lj4EEELj4ENS1_12DenseMapInfoIS5_vEENS1_6detail12DenseMapPairIS5_S9_EEEE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_114MachineSinking15SinkInstructionERN4llvm12MachineInstrERbRNS1_13SmallDenseMapIPNS1_17MachineBasicBlockENS1_11SmallVectorIS7_Lj4EEELj4ENS1_12DenseMapInfoIS7_vEENS1_6detail12DenseMapPairIS7_S9_EEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_114MachineSinking20runOnMachineFunctionERN4llvm15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1414:23 compileModule at /source/src/jitlayers.cpp:2361:79 materialize at /source/src/jitlayers.cpp:906:36 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2056:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3650:27 _jl_invoke at /source/src/gf.c:4103:16 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #process_SciMLProblem#869 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1410:660 unknown function (ip: 0x776cc43865f9) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 process_SciMLProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1262:186 #_#1367 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:806:53 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:781:5 [inlined] ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:781:4 unknown function (ip: 0x776cc4381f1e) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #_#1365 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:774:11 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:773:5 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #ODEProblem#1363 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:763:9 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:762:5 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:35 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 unknown function (ip: 0x776d289e6222) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_eval_module_expr at /source/src/toplevel.c:263:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_eval_module_expr at /source/src/toplevel.c:263:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:125 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:35 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:353 _start at ./client.jl:593:35 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x776d45e92249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 491892938 (Pool: 491888636; Big: 4302); GC: 95 PkgEval terminated after 2730.43s: test duration exceeded the time limit