Package evaluation to test GPLinearODEMaker on Julia 1.14.0-DEV.2116 (f310e68148*) started at 2026-05-06T19:51:14.268 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.77s ################################################################################ # Installation # Installing GPLinearODEMaker... Resolving package versions... Installed RecipesBase ───────── v1.3.4 Installed DelimitedFiles ────── v1.9.1 Installed Statistics ────────── v1.11.1 Installed SymEngine_jll ─────── v0.8.1+0 Installed Compat ────────────── v3.47.0 Installed SymEngine ─────────── v0.8.7 Installed OpenSpecFun_jll ───── v0.5.6+0 Installed IrrationalConstants ─ v0.2.6 Installed LogExpFunctions ───── v0.3.29 Installed MPC_jll ───────────── v1.4.1+0 Installed PrecompileTools ───── v1.3.3 Installed SpecialFunctions ──── v2.7.2 Installed JLLWrappers ───────── v1.7.1 Installed GPLinearODEMaker ──── v0.1.13 Installed Preferences ───────── v1.5.2 Installed IterativeSolvers ──── v0.9.4 Installed DocStringExtensions ─ v0.9.5 Installing 3 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact MPC 225.0 KiB Installed artifact SymEngine 1.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [27ef9b34] + GPLinearODEMaker v0.1.13 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [34da2185] + Compat v3.47.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [27ef9b34] + GPLinearODEMaker v0.1.13 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [3cdcf5f2] + RecipesBase v1.3.4 [276daf66] + SpecialFunctions v2.7.2 [10745b16] + Statistics v1.11.1 ⌅ [123dc426] + SymEngine v0.8.7 [2ce0c516] + MPC_jll v1.4.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [3428059b] + SymEngine_jll v0.8.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.2+0 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 1.3 s ✓ ANSIColoredPrinters 1.2 s ✓ Statistics 2.1 s ✓ IrrationalConstants 0.9 s ✓ LazilyInitializedFields 1.3 s ✓ DocStringExtensions 1.3 s ✓ AbstractTrees 1.4 s ✓ TranscodingStreams 0.9 s ✓ IOCapture 1.1 s ✓ DelimitedFiles 2.0 s ✓ StructUtils 1.7 s ✓ Preferences 1.6 s ✓ Statistics → SparseArraysExt 6.2 s ✓ RegistryInstances 1.5 s ✓ LogExpFunctions 2.0 s ✓ MarkdownAST 1.1 s ✓ CodecZlib 1.9 s ✓ JLLWrappers 1.4 s ✓ PrecompileTools 9.7 s ✓ Compat 2.4 s ✓ Libiconv_jll 2.5 s ✓ Git_LFS_jll 2.5 s ✓ OpenSSH_jll 2.4 s ✓ OpenSpecFun_jll 2.4 s ✓ Expat_jll 2.5 s ✓ MPC_jll 3.9 s ✓ RecipesBase 18.3 s ✓ Parsers 6.1 s ✓ SpecialFunctions 2.5 s ✓ Git_jll 2.5 s ✓ SymEngine_jll 4.5 s ✓ IterativeSolvers 8.6 s ✓ JSON 1.4 s ✓ Git 11.8 s ✓ SymEngine 55.8 s ✓ Documenter WARNING: method definition for symmetrize_A at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:64 declares type variable T but does not use it. WARNING: method definition for ridge_chol at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:99 declares type variable T but does not use it. WARNING: method definition for ndims at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:151 declares type variable T but does not use it. 10.5 s ✓ GPLinearODEMaker 36 dependencies successfully precompiled in 181 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ GPLinearODEMaker │ WARNING: method definition for symmetrize_A at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:64 declares type variable T but does not use it. │ WARNING: method definition for ridge_chol at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:99 declares type variable T but does not use it. │ WARNING: method definition for ndims at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/src/general_functions.jl:151 declares type variable T but does not use it. └ Precompilation completed after 220.68s ################################################################################ # Testing # Testing GPLinearODEMaker Status `/tmp/jl_akntuI/Project.toml` [e30172f5] Documenter v1.17.0 [27ef9b34] GPLinearODEMaker v0.1.13 [42fd0dbc] IterativeSolvers v0.9.4 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 ⌅ [123dc426] SymEngine v0.8.7 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [1a1011a3] SharedArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_akntuI/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [944b1d66] CodecZlib v0.7.8 ⌅ [34da2185] Compat v3.47.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [27ef9b34] GPLinearODEMaker v0.1.13 [d7ba0133] Git v1.5.0 [b5f81e59] IOCapture v1.0.0 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.2 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [d0879d2d] MarkdownAST v0.1.3 [69de0a69] Parsers v2.8.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [3cdcf5f2] RecipesBase v1.3.4 [2792f1a3] RegistryInstances v0.1.0 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.8.1 ⌅ [123dc426] SymEngine v0.8.7 [3bb67fe8] TranscodingStreams v0.11.3 [2e619515] Expat_jll v2.8.0+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [2ce0c516] MPC_jll v1.4.1+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [3428059b] SymEngine_jll v0.8.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Testing... ridge size: 10^-2.534759219328752 max value of array: 10^1.9444826721501687 Test Summary: | Pass Total Time cholesky factorizations | 3 3 1m04.4s nlogL derivatives: Test Failed at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/test/runtests.jl:33 Expression: GLOM.test_∇nlogL_GLOM(glo, 1 .+ rand(n_kern_hyper), print_stuff = false) Evaluated: GLOM.test_∇nlogL_GLOM(GPLinearODEMaker.GLO{Float64, Int64}(Main.se_kernel, 1, 2, 2, [0.6077211019481865, 1.1913756697027011, 1.6293155607328047, 1.703792864503566, 1.9375678783369965, 2.35026777257779, 2.5344649019174303, 2.5897488299383853, 2.627315782782267, 2.7204859502896994 … 18.395064361750865, 18.70845372919217, 18.981537349824727, 18.986552746685252, 19.27863719744358, 19.4401626112544, 19.458253784643617, 19.59589114022126, 19.684690739221768, 19.871171903241972], [0.7003928909497309, 0.6990576801224119, 0.9430917446978317, 0.5204520460579884, 0.9215311914927834, -0.09144417928174556, 1.0512889375642718, -0.29632268284303076, 0.9423099693449487, -0.5468576462511909 … 0.21775568060467998, 0.7559781534938987, 0.6105313693877493, 0.918737595518066, 0.7768385598997822, 0.7586124650746418, 0.8339196553020258, 0.8925405783545757, 0.9811295087797831, 0.7140105224540747], [0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, 0.2 … 0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, 0.2, 0.1, 0.2], [1.0, 1.0], [1.0 0.1; 0.1 1.0], [1, 2, 3, 4, 5], [2 1; 1 0;;; 1 0; 1 0;;;; 1 1; 0 0;;; 0 0; 0 0;;;;; 0 1; 1 2;;; 0 1; 0 1;;;; 0 0; 1 1;;; 0 0; 0 0;;;;;; 0 0; 0 0;;; 1 1; 0 0;;;; 1 0; 1 0;;; 2 1; 1 0;;;;; 0 0; 0 0;;; 0 0; 1 1;;;; 0 1; 0 1;;; 0 1; 1 2], [1 1; 1 1;;; 1 1; 1 1;;;; 1 1; 1 1;;; 1 1; 1 1], [0.0 0.0; 0.0 0.0; … ; 0.0 0.0; 0.0 0.0;;; 0.0 0.0; 0.0 0.0; … ; 0.0 0.0; 0.0 0.0], false, false), [1.671176135205867]; print_stuff = false) Stacktrace: [1] top-level scope @ ~/.julia/packages/GPLinearODEMaker/ftSXZ/test/runtests.jl:18 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [3] macro expansion @ ~/.julia/packages/GPLinearODEMaker/ftSXZ/test/runtests.jl:33 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Test Summary: | Pass Fail Total Time nlogL derivatives | 2 1 3 57.7s RNG of the outermost testset: Random.Xoshiro(0x10dd08d6775a0b77, 0x283334aeaf697208, 0xc8e7d6434be3a223, 0x84f0dfccdd58fe76, 0x1893f4cd0e778178) ERROR: LoadError: Some tests did not pass: 2 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GPLinearODEMaker/ftSXZ/test/runtests.jl:17 Testing failed after 145.75s ERROR: LoadError: Package GPLinearODEMaker errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 416.92s: package has test failures