Package evaluation to test SBMLToolkit on Julia 1.14.0-DEV.2108 (df12394092*) started at 2026-05-01T00:32:50.363 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.46s ################################################################################ # Installation # Installing SBMLToolkit... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [86080e66] + SBMLToolkit v0.1.31 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.12.1 ⌅ [479239e8] + Catalyst v15.0.11 [d360d2e6] + ChainRulesCore v1.26.1 ⌅ [861a8166] + Combinatorics v1.0.2 ⌅ [a80b9123] + CommonMark v0.10.3 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 ⌅ [2b5f629d] + DiffEqBase v6.214.1 [459566f4] + DiffEqCallbacks v4.17.0 [77a26b50] + DiffEqNoiseProcess v5.31.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.17 [8d63f2c5] + DispatchDoctor v0.4.28 [31c24e10] + Distributions v0.25.125 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [5b8099bc] + DomainSets v0.7.18 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.12.3 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.19 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.3.2 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 [6a86dc24] + FiniteDiff v2.30.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.3 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.3.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.28.0 [ba0b0d4f] + Krylov v0.10.6 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [87fe0de2] + LineSearch v0.1.8 [7ed4a6bd] + LinearSolve v3.75.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.84.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.7.1 [77ba4419] + NaNMath v1.1.3 ⌃ [8913a72c] + NonlinearSolve v4.16.0 ⌃ [be0214bd] + NonlinearSolveBase v2.11.2 ⌃ [5959db7a] + NonlinearSolveFirstOrder v2.0.0 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 ⌃ [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 ⌃ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v3.54.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.2.0 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [e5567a89] + SBML v1.6.0 [86080e66] + SBMLToolkit v0.1.31 [9dfe8606] + SCCNonlinearSolve v1.13.0 ⌅ [0bca4576] + SciMLBase v2.153.1 [19f34311] + SciMLJacobianOperators v0.1.13 [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.17.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 ⌃ [727e6d20] + SimpleNonlinearSolve v2.11.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [aedffcd0] + Static v1.4.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌅ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.58.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.21.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 4.1 s ✓ DynamicQuantities → DynamicQuantitiesRecursiveArrayToolsExt 18.9 s ✓ SBML 5.9 s ✓ SciMLBase → SciMLBaseMLStyleExt 5.0 s ✓ SCCNonlinearSolve 5.9 s ✓ DynamicQuantities → DynamicQuantitiesSciMLBaseExt 5.3 s ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 62.7 s ✓ Symbolics 7.4 s ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6.1 s ✓ DiffEqBase → DiffEqBaseDynamicQuantitiesExt 13.9 s ✓ OrdinaryDiffEqCore 10.3 s ✓ JumpProcesses 4.6 s ✓ SCCNonlinearSolve → SCCNonlinearSolveChainRulesCoreExt 15.0 s ✓ Symbolics → SymbolicsForwardDiffExt 15.5 s ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 7.2 s ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 8.6 s ✓ JumpProcesses → JumpProcessesOrdinaryDiffEqCoreExt 14.3 s ✓ Symbolics → SymbolicsPreallocationToolsExt 10.3 s ✓ OrdinaryDiffEqStabilizedRK 7.5 s ✓ OrdinaryDiffEqFunctionMap 67.1 s ✓ OrdinaryDiffEqVerner 7.9 s ✓ OrdinaryDiffEqQPRK 8.5 s ✓ OrdinaryDiffEqSymplecticRK 10.8 s ✓ OrdinaryDiffEqLowOrderRK 9.1 s ✓ OrdinaryDiffEqFeagin 11.0 s ✓ OrdinaryDiffEqSSPRK 9.6 s ✓ OrdinaryDiffEqRKN 9.1 s ✓ OrdinaryDiffEqHighOrderRK 8.5 s ✓ OrdinaryDiffEqExplicitRK 17.0 s ✓ OrdinaryDiffEqTsit5 12.3 s ✓ OrdinaryDiffEqLinear 9.4 s ✓ OrdinaryDiffEqPRK 11.7 s ✓ OrdinaryDiffEqLowStorageRK 13.7 s ✓ OrdinaryDiffEqDifferentiation 309.6 s ✓ ModelingToolkit 8.9 s ✓ OrdinaryDiffEqAdamsBashforthMoulton 7.1 s ✓ OrdinaryDiffEqNordsieck 9.1 s ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 90.2 s ✓ Catalyst 15.0 s ✓ OrdinaryDiffEqExtrapolation 45.6 s ✓ OrdinaryDiffEqRosenbrock 16.7 s ✓ OrdinaryDiffEqExponentialRK 15.8 s ✓ OrdinaryDiffEqNonlinearSolve 69.6 s ✓ SBMLToolkit 63.0 s ✓ OrdinaryDiffEqFIRK 16.2 s ✓ OrdinaryDiffEqIMEXMultistep 15.9 s ✓ OrdinaryDiffEqStabilizedIRK 17.0 s ✓ OrdinaryDiffEqPDIRK 18.5 s ✓ OrdinaryDiffEqSDIRK 35.4 s ✓ OrdinaryDiffEqBDF 81.7 s ✓ OrdinaryDiffEqDefault 27.2 s ✓ OrdinaryDiffEq 159.2 s ✓ SBMLToolkitTestSuite 52 dependencies successfully precompiled in 1462 seconds. 451 already precompiled. Precompilation completed after 1478.4s ################################################################################ # Testing # Testing SBMLToolkit Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_izVgkn/Project.toml` [4c88cf16] + Aqua v0.8.14 [336ed68f] + CSV v0.10.16 [a93c6f00] + DataFrames v1.8.2 ⌅ [1dea7af3] + OrdinaryDiffEq v6.107.0 [91a5bcdd] + Plots v1.41.6 [86080e66] + SBMLToolkit v0.1.31 ⌅ [792e603a] + SBMLToolkitTestSuite v0.0.4 [1bc83da4] + SafeTestsets v0.1.0 ⌅ [c3572dad] + Sundials v4.28.0 Updating `/tmp/jl_izVgkn/Manifest.toml` [4c88cf16] + Aqua v0.8.14 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.2 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 ⌅ [2b5f629d] ↓ DiffEqBase v6.214.1 ⇒ v6.213.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.30.0 [c87230d0] + FFMPEG v0.4.5 ⌅ [7034ab61] ↓ FastBroadcast v1.3.2 ⇒ v0.3.5 [442a2c76] + FastGaussQuadrature v1.1.0 [48062228] + FilePathsBase v0.9.24 [53c48c17] + FixedPointNumbers v0.8.5 [28b8d3ca] + GR v0.73.24 [c145ed77] + GenericSchur v0.5.6 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.11.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v1.5.1 ⌃ [ccbc3e58] ↓ JumpProcesses v9.28.0 ⇒ v9.23.2 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.6.1 [d125e4d3] + ManualMemory v0.1.8 [739be429] + MbedTLS v1.1.10 [442fdcdd] + Measures v0.3.3 [d41bc354] + NLSolversBase v8.0.0 [4d8831e6] + OpenSSL v1.6.1 ⌅ [1dea7af3] + OrdinaryDiffEq v6.107.0 ⌅ [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.10.0 ⌅ [6ad6398a] + OrdinaryDiffEqBDF v1.14.0 ⌅ [bbf590c4] + OrdinaryDiffEqCore v3.1.0 ⌅ [50262376] + OrdinaryDiffEqDefault v1.14.0 ⌅ [4302a76b] + OrdinaryDiffEqDifferentiation v1.22.0 ⌅ [9286f039] + OrdinaryDiffEqExplicitRK v1.10.0 ⌅ [e0540318] + OrdinaryDiffEqExponentialRK v1.12.0 ⌅ [becaefa8] + OrdinaryDiffEqExtrapolation v1.13.0 ⌅ [5960d6e9] + OrdinaryDiffEqFIRK v1.20.0 ⌅ [101fe9f7] + OrdinaryDiffEqFeagin v1.9.0 ⌅ [d3585ca7] + OrdinaryDiffEqFunctionMap v1.10.0 ⌅ [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.10.0 ⌅ [9f002381] + OrdinaryDiffEqIMEXMultistep v1.11.0 ⌅ [521117fe] + OrdinaryDiffEqLinear v1.11.0 ⌅ [1344f307] + OrdinaryDiffEqLowOrderRK v1.10.0 ⌅ [b0944070] + OrdinaryDiffEqLowStorageRK v1.11.0 ⌅ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.19.0 ⌅ [c9986a66] + OrdinaryDiffEqNordsieck v1.8.0 ⌅ [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.10.0 ⌅ [5b33eab2] + OrdinaryDiffEqPRK v1.9.0 ⌅ [04162be5] + OrdinaryDiffEqQPRK v1.9.0 ⌅ [af6ede74] + OrdinaryDiffEqRKN v1.11.0 ⌅ [43230ef6] + OrdinaryDiffEqRosenbrock v1.22.0 ⌅ [2d112036] + OrdinaryDiffEqSDIRK v1.11.0 ⌅ [669c94d9] + OrdinaryDiffEqSSPRK v1.12.0 ⌅ [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.10.0 ⌅ [358294b1] + OrdinaryDiffEqStabilizedRK v1.9.0 ⌅ [fa646aed] + OrdinaryDiffEqSymplecticRK v1.12.0 ⌅ [b1df2697] + OrdinaryDiffEqTsit5 v1.10.0 ⌅ [79d7bb75] + OrdinaryDiffEqVerner v1.11.0 [69de0a69] + Parsers v2.8.4 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.6 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [08abe8d2] + PrettyTables v3.3.2 [01d81517] + RecipesPipeline v0.6.12 ⌅ [731186ca] ↓ RecursiveArrayTools v3.54.0 ⇒ v3.50.0 [05181044] + RelocatableFolders v1.0.1 [86080e66] + SBMLToolkit v0.1.31 ⌅ [792e603a] + SBMLToolkitTestSuite v0.0.4 [94e857df] + SIMDTypes v0.1.0 [1bc83da4] + SafeTestsets v0.1.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [0a514795] + SparseMatrixColorings v0.4.27 [860ef19b] + StableRNGs v1.0.4 [0d7ed370] + StaticArrayInterface v1.10.0 [7792a7ef] + StrideArraysCore v0.5.9 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.0 ⌅ [c3572dad] + Sundials v4.28.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.5 [3bb67fe8] + TranscodingStreams v0.11.3 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.6+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.8.0+0 [b22a6f82] + FFMPEG_jll v8.1.0+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.1+1 [d2c73de3] + GR_jll v0.73.24+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.3+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.42.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [e7412a2a] + Ogg_jll v1.3.6+0 [91d4177d] + Opus_jll v1.6.1+0 [36c8627f] + Pango_jll v1.57.1+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [c0090381] + Qt6Base_jll v6.10.2+1 [629bc702] + Qt6Declarative_jll v6.10.2+1 [ce943373] + Qt6ShaderTools_jll v6.10.2+1 [6de9746b] + Qt6Svg_jll v6.10.2+0 [e99dba38] + Qt6Wayland_jll v6.10.2+1 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.3+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.47.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.3+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [8e53e030] + libdrm_jll v2.4.125+1 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_izVgkn/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.16 ⌅ [479239e8] Catalyst v15.0.11 [a93c6f00] DataFrames v1.8.2 ⌅ [961ee093] ModelingToolkit v9.84.0 ⌅ [1dea7af3] OrdinaryDiffEq v6.107.0 [91a5bcdd] Plots v1.41.6 [e5567a89] SBML v1.6.0 [86080e66] SBMLToolkit v0.1.31 ⌅ [792e603a] SBMLToolkitTestSuite v0.0.4 [1bc83da4] SafeTestsets v0.1.0 ⌅ [c3572dad] Sundials v4.28.0 ⌅ [d1185830] SymbolicUtils v3.32.0 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_izVgkn/Manifest.toml` [47edcb42] ADTypes v1.22.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.24.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 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CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: `istree` is deprecated, use `iscall` instead. │ caller = (::SBMLToolkit.var"#check_args#get_massaction##0")(x::SymbolicUtils.BasicSymbolic{Real}) at reactions.jl:166 └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:166 ┌ Warning: Cannot separate bidirectional kineticLaw `k1 - s1s2(t) - k1*s2(t)` to forward and reverse part. Setting forward to `k1 - s1s2(t) - k1*s2(t)` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:49 ┌ Warning: Cannot separate bidirectional kineticLaw `k1` to forward and reverse part. Setting forward to `k1` and reverse to `0`. Stochastic simulations will be inexact. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/reactions.jl:35 Rules: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: An equation (0.5 ~ Differential(t)(k1(t))) contains a differential with respect to a species. This is currently not supported. If this is a functionality you require, please raise an issue on the Catalyst GitHub page and we can consider the best way to implement it. Stacktrace: [1] error(s::String) @ Base ./error.jl:56 [2] Catalyst.ReactionSystem(eqs::Vector{Union{Symbolics.Equation, Catalyst.Reaction}}, rxs::Vector{Catalyst.Reaction}, iv::SymbolicUtils.BasicSymbolic{Real}, sivs::Vector{SymbolicUtils.BasicSymbolic{Real}}, unknowns::Vector{SymbolicUtils.BasicSymbolic{Real}}, spcs::Vector{SymbolicUtils.BasicSymbolic{Real}}, ps::Vector{SymbolicUtils.BasicSymbolic{Real}}, var_to_name::Dict{Any, Any}, observed::Vector{Symbolics.Equation}, name::Symbol, systems::Vector{Any}, defaults::Dict{Any, Any}, connection_type::Nothing, nps::Catalyst.NetworkProperties{Int64, SymbolicUtils.BasicSymbolic{Real}}, cls::Bool, cevs::Vector{ModelingToolkit.SymbolicContinuousCallback}, devs::Vector{ModelingToolkit.SymbolicDiscreteCallback}, metadata::Nothing, complete::Bool, parent::Nothing; checks::Bool) @ Catalyst ~/.julia/packages/Catalyst/DMVHG/src/reactionsystem.jl:373 [3] Catalyst.ReactionSystem(eqs::Vector{Any}, iv::Symbolics.Num, unknowns::Vector{SymbolicUtils.BasicSymbolic{Real}}, ps::Vector{SymbolicUtils.BasicSymbolic{Real}}; observed::Vector{Symbolics.Equation}, systems::Vector{Any}, name::Symbol, default_u0::Dict{Any, Any}, default_p::Dict{Any, Any}, defaults::Dict{Symbolics.Num, Any}, connection_type::Nothing, checks::Bool, networkproperties::Nothing, combinatoric_ratelaws::Bool, balanced_bc_check::Bool, spatial_ivs::Nothing, continuous_events::Nothing, discrete_events::Nothing, metadata::Nothing) @ Catalyst ~/.julia/packages/Catalyst/DMVHG/src/reactionsystem.jl:487 [4] Catalyst.ReactionSystem(model::SBML.Model; kwargs::@Kwargs{name::Symbol}) @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:103 [5] ReactionSystem @ ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:54 [inlined] [6] ModelingToolkit.ODESystem(model::SBML.Model; include_zero_odes::Bool, kwargs::@Kwargs{name::Symbol}) @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/systems.jl:121 [7] top-level scope @ ~/.julia/packages/ModelingToolkit/aiAqm/src/systems/abstractsystem.jl:2297 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [9] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:14 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [11] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:14 [inlined] [12] eval(m::Module, e::Any) @ Core ./boot.jl:517 [13] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:4 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [15] macro expansion @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:13 [inlined] [16] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [17] eval(m::Module, e::Any) @ Core ./boot.jl:517 [18] top-level scope @ ~/.julia/packages/SBMLToolkit/7Hd7h/test/runtests.jl:28 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:517 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [23] _start() @ Base ./client.jl:593 in expression starting at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/rules.jl:65 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. └ @ SBMLToolkit ~/.julia/packages/SBMLToolkit/7Hd7h/src/events.jl:31 ┌ Warning: `convert_simplify_math` is deprecated, use `convert_promotelocals_expandfuns` instead. │ caller = sbml(sym::Symbol) at SBMLToolkitTestSuite.jl:104 [inlined] └ @ SBML ~/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:104 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 169 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16InstCombinerImpl13foldICmpBinOpERNS_8ICmpInstERKNS_13SimplifyQueryE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16InstCombinerImpl13visitICmpInstERNS_8ICmpInstE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL31combineInstructionsOverFunctionRN4llvm8FunctionERNS_19InstructionWorklistEPNS_9AAResultsERNS_15AssumptionCacheERNS_17TargetLibraryInfoERNS_19TargetTransformInfoERNS_13DominatorTreeERNS_25OptimizationRemarkEmitterEPNS_18BlockFrequencyInfoEPNS_21BranchProbabilityInfoEPNS_18ProfileSummaryInfoERKNS_18InstCombineOptionsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15InstCombinePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:977:12 operator() at /source/src/jitlayers.cpp:1298:17 operator() at /source/src/jitlayers.cpp:1435:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2353:18 materialize at /source/src/jitlayers.cpp:905:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2056:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:510:39 jl_compile_method_internal at /source/src/gf.c:3650:27 _jl_invoke at /source/src/gf.c:4103:16 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #__structural_simplify#1857 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/systems.jl:95:131 __structural_simplify at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/systems.jl:75:23 [inlined] #structural_simplify#1848 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/systems.jl:36:23 structural_simplify at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/systems.jl:31:58 [inlined] structural_simplify at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/systems.jl:31:2 [inlined] #_#1415 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1482:106 InitializationProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1442:79 unknown function (ip: 0x7372318564b3) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #_#1413 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1420:14 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 InitializationProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:1419:5 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #maybe_build_initialization_problem#859 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1070:56 maybe_build_initialization_problem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1059:51 unknown function (ip: 0x737231853833) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #process_SciMLProblem#869 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1325:287 unknown function (ip: 0x7372318441fb) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 process_SciMLProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1262:188 #_#1367 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:806:59 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:781:51 [inlined] ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:781:4 unknown function (ip: 0x73723183c006) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #_#1365 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:774:14 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:773:5 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #ODEProblem#1363 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:763:12 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:762:5 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 #verify_case#8 at /home/pkgeval/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:128:91 verify_case at /home/pkgeval/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:91:17 [inlined] #verify_all#15 at /home/pkgeval/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:163:38 verify_all at /home/pkgeval/.julia/packages/SBMLToolkitTestSuite/QDNw7/src/SBMLToolkitTestSuite.jl:158:2 unknown function (ip: 0x7372997c5676) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 unknown function (ip: 0x737299787dd2) at (unknown file) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_eval_module_expr at /source/src/toplevel.c:263:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_eval_module_expr at /source/src/toplevel.c:263:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:665:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7372b6f1c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000798e3148d870 Total snapshots: 415. Utilization: 0% ╎415 @Base/task.jl:1168 wait_forever() 414╎ 415 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4111:23 [inlined] ijl_apply_generic at /source/src/gf.c:4337:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 28523564 (Pool: 28522612; Big: 952); GC: 29 [169] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLToolkit/7Hd7h/test/simresults.jl:19 ijl_egal__bitstag at /source/src/builtins.c:304:24 [inlined] ijl_egal__bitstag at /source/src/builtins.c:245:18 unknown function (ip: 0x7ffec776118f) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 264403403 (Pool: 264400382; Big: 3021); GC: 70 PkgEval terminated after 2744.62s: test duration exceeded the time limit