Package evaluation to test NMFMerge on Julia 1.14.0-DEV.2086 (d19eac062f*) started at 2026-04-28T16:03:46.274 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.04s ################################################################################ # Installation # Installing NMFMerge... Resolving package versions... Installed OrderedCollections ── v1.8.1 Installed AliasTables ───────── v1.1.3 Installed StatsBase ─────────── v0.34.10 Installed DataStructures ────── v0.19.4 Installed TSVD ──────────────── v0.4.4 Installed Adapt ─────────────── v4.5.2 Installed DataAPI ───────────── v1.16.0 Installed GsvdInitialization ── v1.1.0 Installed StatsAPI ──────────── v1.8.0 Installed Statistics ────────── v1.11.1 Installed NMFMerge ──────────── v1.1.0 Installed NonNegLeastSquares ── v0.4.1 Installed LogExpFunctions ───── v0.3.29 Installed NamedDims ─────────── v1.2.3 Installed PrecompileTools ───── v1.3.3 Installed Missings ──────────── v1.2.0 Installed IrrationalConstants ─ v0.2.6 Installed PtrArrays ─────────── v1.4.0 Installed NMF ───────────────── v1.0.3 Installed Requires ──────────── v1.3.1 Installed Preferences ───────── v1.5.2 Installed RandomizedLinAlg ──── v0.1.0 Installed SortingAlgorithms ─── v1.2.2 Installed DocStringExtensions ─ v0.9.5 Installed Kronecker ─────────── v0.5.5 Updating `~/.julia/environments/v1.14/Project.toml` [9cc52eda] + NMFMerge v1.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.5.2 [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.4 [ffbed154] + DocStringExtensions v0.9.5 [2ac24108] + GsvdInitialization v1.1.0 [92d709cd] + IrrationalConstants v0.2.6 [2c470bb0] + Kronecker v0.5.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [6ef6ca0d] + NMF v1.0.3 [9cc52eda] + NMFMerge v1.1.0 [356022a1] + NamedDims v1.2.3 [b7351bd1] + NonNegLeastSquares v0.4.1 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [0448d7d9] + RandomizedLinAlg v0.1.0 [ae029012] + Requires v1.3.1 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [9449cd9e] + TSVD v0.4.4 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [4536629a] + OpenBLAS_jll v0.3.32+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.8 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.2 s ✓ MacroTools 1.1 s ✓ Statistics 0.9 s ✓ DataAPI 2.0 s ✓ IrrationalConstants 1.0 s ✓ StaticArraysCore 0.9 s ✓ StatsAPI 1.3 s ✓ OrderedCollections 1.2 s ✓ DocStringExtensions 0.8 s ✓ PtrArrays 1.2 s ✓ Requires 1.1 s ✓ NaNMath 1.8 s ✓ NonNegLeastSquares 1.4 s ✓ Preferences 0.9 s ✓ RandomizedLinAlg 1.8 s ✓ CommonSubexpressions 1.4 s ✓ Statistics → SparseArraysExt 2.3 s ✓ NamedDims 1.0 s ✓ Missings 0.8 s ✓ DiffResults 3.6 s ✓ DataStructures 1.3 s ✓ LogExpFunctions 1.0 s ✓ AliasTables 0.9 s ✓ Adapt 1.6 s ✓ JLLWrappers 1.2 s ✓ PrecompileTools 1.1 s ✓ SortingAlgorithms 0.9 s ✓ TSVD 1.4 s ✓ Adapt → AdaptSparseArraysExt 2.3 s ✓ OpenSpecFun_jll 4.6 s ✓ StatsBase 5.6 s ✓ SpecialFunctions 3.2 s ✓ Kronecker 27.9 s ✓ NMF 1.3 s ✓ DiffRules 2.9 s ✓ GsvdInitialization 7.6 s ✓ ForwardDiff 2.8 s ✓ NMFMerge 37 dependencies successfully precompiled in 98 seconds. 16 already precompiled. Precompilation completed after 133.31s ################################################################################ # Testing # Testing NMFMerge Status `/tmp/jl_JsI8sn/Project.toml` [864edb3b] DataStructures v0.19.4 ⌅ [f6369f11] ForwardDiff v0.10.39 [2ac24108] GsvdInitialization v1.1.0 [6ef6ca0d] NMF v1.0.3 [9cc52eda] NMFMerge v1.1.0 [9449cd9e] TSVD v0.4.4 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JsI8sn/Manifest.toml` [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [bbf7d656] CommonSubexpressions v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [2ac24108] GsvdInitialization v1.1.0 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2c470bb0] Kronecker v0.5.5 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [6ef6ca0d] NMF v1.0.3 [9cc52eda] NMFMerge v1.1.0 [77ba4419] NaNMath v1.1.3 [356022a1] NamedDims v1.2.3 [b7351bd1] NonNegLeastSquares v0.4.1 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [0448d7d9] RandomizedLinAlg v0.1.0 [ae029012] Requires v1.3.1 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [9449cd9e] TSVD v0.4.4 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [4536629a] OpenBLAS_jll v0.3.32+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `enqueue!(q::PriorityQueue, k, v)` is deprecated, use `Base.push!(q, k => v)` instead. │ caller = pqupdate2to1!(queuepenalty::typeof(NMFMerge.mergepenalty), pq::PriorityQueue{Tuple{Int64, Int64}, Float64, Base.Order.ForwardOrdering}, S::Vector{Vector{Float64}}, T::Vector{Vector{Float64}}, id01::Int64, overlapids::UnitRange{Int64}) at NMFMerge.jl:147 └ @ NMFMerge ~/.julia/packages/NMFMerge/N9DXs/src/NMFMerge.jl:147 ┌ Warning: `dequeue!(q::PriorityQueue)` is deprecated, use `(Base.popfirst!(q)).first` instead. │ caller = colmerge2to1pq(queuepenalty::Function, S::Matrix{Float64}, T::Matrix{Float64}, n::Int64) at NMFMerge.jl:129 └ @ NMFMerge ~/.julia/packages/NMFMerge/N9DXs/src/NMFMerge.jl:129 Test Summary: | Pass Total Time test top wrapper | 11 11 3m31.6s merge coefficients: Error During Test at /home/pkgeval/.julia/packages/NMFMerge/N9DXs/test/runtests.jl:72 Got exception outside of a @test ArgumentError: invalid argument #11 to LAPACK call Stacktrace: [1] getindex(A::Vector{Float64}, i::Int64) @ Base /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/lapack.jl:29 [inlined] [2] sygvd!(itype::Int64, jobz::Char, uplo::Char, A::Matrix{Float64}, B::Matrix{Float64}) @ LinearAlgebra.LAPACK /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/lapack.jl:5511 [3] isposdef(A::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/symmetriceigen.jl:253 [inlined] [4] eigen!(A::Matrix{Float64}, B::Matrix{Float64}; sortby::Function) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/eigen.jl:436 [5] copy_similar(A::Matrix{Float64}, ::Type{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/eigen.jl:435 [inlined] [6] eigen(A::Matrix{Float64}, B::Matrix{Float64}; kws::@Kwargs{}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/eigen.jl:520 [7] eigen(A::Matrix{Float64}, B::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/eigen.jl:518 [8] top-level scope @ ~/.julia/packages/NMFMerge/N9DXs/test/runtests.jl:73 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2246 [inlined] [10] macro expansion @ ~/.julia/packages/NMFMerge/N9DXs/test/runtests.jl:83 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:327 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:517 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [15] _start() @ Base ./client.jl:593 Test Summary: | Pass Error Total Time merge coefficients | 2 1 3 6.6s RNG of the outermost testset: Random.Xoshiro(0xb2d4d7c147605f38, 0x62299c1eadd6c15b, 0x3c9b98e88c46e2c9, 0xa6d40d975bc4e999, 0x982807cb90a97465) ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NMFMerge/N9DXs/test/runtests.jl:72 ** On entry to DSYGVD parameter number 11 had an illegal value Testing failed after 236.07s ERROR: LoadError: Package NMFMerge errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3162 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3025 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:586 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:352 [12] _start() @ Base ./client.jl:593 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 406.78s: package tests unexpectedly errored