Package evaluation to test CrystalNets on Julia 1.14.0-DEV.2086 (d19eac062f*) started at 2026-04-28T17:00:34.613 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.36s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.2.0 [864edb3b] + DataStructures v0.19.4 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] + PeriodicGraphs v1.0.1 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.32+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 5.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.4 s ✓ Chemfiles_jll 2.0 s ✓ spglib_jll 6.9 s ✓ AtomsBase 80.7 s ✓ PeriodicGraphs 7.6 s ✓ Chemfiles 99.8 s ✓ PeriodicGraphEmbeddings 24.0 s ✓ PeriodicGraphEquilibriumPlacement 314.9 s ✓ CrystalNets 8 dependencies successfully precompiled in 539 seconds. 59 already precompiled. Precompilation completed after 562.4s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_r7rnft/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [86223c79] Graphs v1.14.0 [18c5b727] PeriodicGraphs v1.0.1 [90137ffa] StaticArrays v1.9.18 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_r7rnft/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [864edb3b] DataStructures v0.19.4 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] PeriodicGraphs v1.0.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.32+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 73 3 76 17m45.9s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 0.8s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 9m40.8s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 54.7s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.0s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 ..................... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 37 running 1 of 1 signal (10): User defined signal 1 _setindex_scalar! at ./simdloop.jl:0:6 setindex! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/sparsematrix.jl:3192:2 [inlined] linsolve! at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:310:59 dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:442:197 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:487:41 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:507:10 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/embedding.jl:41:170 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:675:43 #UnderlyingNets##8 at ./none (unknown line) iterate at ./generator.jl:48:23 [inlined] _append! at ./array.jl:1451:19 append! at ./array.jl:1444:4 [inlined] UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:992:168 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:86:2 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:10 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:4 unknown function (ip: 0x7e6f080fa96c) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 .....eval at ./boot.jl:517:3 .include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 .include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 ._start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7e6f64813249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) . ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e6f49ffc010 Total snapshots: 46. Utilization: 100% ╎46 @Base/client.jl:593 _start() ╎ 46 @Base/client.jl:318 exec_options(opts::Base.JLOptions) ╎ 46 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ 46 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ 46 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::Stri… ╎ 46 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _path… ╎ ╎ 46 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity), mod… ╎ ╎ 46 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 46 @CrystalNets/…query.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 46 @CrystalNets/…uery.jl:90 #topological_genome#224 ╎ ╎ 30 @CrystalNets/…uery.jl:86 topological_genome ╎ ╎ ╎ 30 @CrystalNets/…pes.jl:992 UnderlyingNets(g::PeriodicGraph2D, op… ╎ ╎ ╎ 30 @Base/array.jl:1444 materialize(bc::Base.Broadcast.Broadcaste… ╎ ╎ ╎ 30 @Base/array.jl:1451 _append!(a::Vector{Tuple{Vector{CrystalN… ╎ ╎ ╎ 30 @Base/generator.jl:48 iterate(::Base.Generator{Vector{Vecto… ╎ ╎ ╎ 30 none:? (::CrystalNets.var"#UnderlyingNets##8#UnderlyingNet… ╎ ╎ ╎ ╎ 30 @CrystalNets/…s.jl:675 (CrystalNet2D)(cell::PeriodicGraph… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:27 equilibrium(g::P… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:905 Matrix{Int64}(::UndefInitializer,… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:908 checked_dims(::Int64, ::Int64) ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:958 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:364 fill! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:368 _fill! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1053 _setindex! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:37 equilibrium(g::P… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:905 materialize!(dest::Vector{Int64},… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:908 materialize!(::Base.Broadcast.De… ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:950 copyto!(dest::Vector{Int64}, bc:… ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:991 fill!(A::Vector{Int64}, x::Int6… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1076 _fill!(A::Vector{Int64}, x::In… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1110 copyto_unaliased!(deststyle::… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:381 setindex!(V::SubArray{Int64, … ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:3192 checkbounds(A::SubArray{Int… ╎ ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:3203 _setindex_scalar!(A::Spars… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:310 view(A::Vector{Int64}, I::Un… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:310 checkbounds(A::Vector{Int64… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:308 checkbounds(::Type{Bool}, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:192 checkindex(::Type{Bool}, i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:334 getindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1040 getindex ╎ ╎ ╎ ╎ 28 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::P… ╎ ╎ ╎ ╎ 28 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::… ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:485 try_modulo(::… ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:255 rational_lu(… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:58 rational_lu!… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:192 simd_index(r::UnitRange{Int64}, j… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:1040 getindex ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 rational_lu!… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 *(x::Period… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 PeriodicGr… ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 - 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1227 - ╎ ╎ ╎ ╎ 26 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo(::… ╎ ╎ ╎ ╎ 15 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:905 copy(a::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:908 length(t::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:950 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…dloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:675 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:702 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:77 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:424 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:518 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:514 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:172 tdiv_q(a::BigInt, b::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 kwcall(::@NamedTuple{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:116 copy(a::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:119 length(t::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:123 prod(x::Tuple{Int64, Int64}) ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ ╎ 14 @LinearAlgebra/…:348 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ ╎ 14 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ ╎ 14 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 14 @SparseArrays/…:91 _spmatmul!(C::Matrix{Big… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/gmp.jl:569 getindex(::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/gmp.jl:568 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 9 @Base/gmp.jl:201 mul_si(a::BigInt, b::In… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:69 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:70 BigInt(; nbits::Int64) 4╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:157 finalizer(f::Ptr{Not… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:71 BigInt(; nbits::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:92 finalizer 4╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:200 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:507 getindex(::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/gmp.jl:172 add(a::BigInt, b::BigInt) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:69 kwcall(::@NamedTuple{nbi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:70 BigInt(; nbits::Int64) 3╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:157 init2!(x::BigInt, a::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:71 BigInt(; nbits::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:92 init2!(x::BigInt, a::I… ╎ ╎ ╎ ╎ 7 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:311 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:273 forward_su… ╎ ╎ ╎ ╎ ╎ 2 @Base/…mdloop.jl:77 getindex(::Matrix{PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:274 _getinde… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rs.jl:320 != 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:1078 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:988 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:951 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:312 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 4 @SparseArrays/…:2800 getindex(A::SparseArrays.Spars… 1╎ ╎ ╎ ╎ ╎ 3 @SparseArrays/…:2784 getindex_cols(A::SparseArrays… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1048 Vector{PeriodicGraphEquilibri… 2╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1053 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:2785 getindex_cols(A::SparseArrays… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 (::Colon)(start::Int64, stop:… 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1053 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:313 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:295 backward_s… ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 inv(x::PeriodicGraphEquilibriu… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:296 macro ex… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:434 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:393 div 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div ╎ ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:444 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 2 @Base/…adcast.jl:905 similar(a::Matrix{Int64}, S::Ty… ╎ ╎ ╎ ╎ ╎ 2 @Base/…adcast.jl:908 size(t::Matrix{Int64}, dim::In… ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:950 copyto! ╎ ╎ ╎ ╎ ╎ 2 @Base/…dcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 2 @Base/…dloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…cast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…onal.jl:774 setindex! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1058 setindex! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:315 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int32) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 BigInt(; nbits::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 finalizer(f::Ptr{Nothi… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1059 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1065 _setindex! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:448 dixon_p(::Va… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 materialize(bc::Base.Broadcast… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:455 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:370 _inner_dixo… 1╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:228 pop!(a::Vector{Int64}) ╎ ╎ 16 @CrystalNets/…uery.jl:87 topological_genome ╎ ╎ ╎ 16 @CrystalNets/…ery.jl:153 topological_genome(group::UnderlyingN… ╎ ╎ ╎ 8 @CrystalNets/…ery.jl:22 topological_genome(net::CrystalNet2D{… ╎ ╎ ╎ 7 @CrystalNets/…ty.jl:232 collision_nodes(net::CrystalNet2D{Ra… ╎ ╎ ╎ 7 @CrystalNets/…ty.jl:87 get_CollisionList(g::PeriodicGraph2D… ╎ ╎ ╎ 7 @CrystalNets/…ty.jl:28 get_CollisionNode(g::PeriodicGraph2… ╎ ╎ ╎ ╎ 1 @Base/array.jl:833 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 1 @Base/generator.jl:48 collect_to_with_first!(dest::Vecto… ╎ ╎ ╎ ╎ 1 none:? collect_to!(dest::Vector{Vector{Int64}}, itr::Ba… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Periodi… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 _neighborhood(g::PeriodicGraph2D… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:133 falses(dims::Int64) ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:100 falses(dims::Tuple{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:991 BitArray(::UndefInitializer, di… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 BitVector(::UndefInitializer,… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 iterate(t::Tuple{Int64}) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:387 iterate(t::Tuple{Int64}, i::… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:13 length ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ple.jl:669 prod 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ 6 @Base/array.jl:843 collect(itr::Base.Generator{UnitRange{… ╎ ╎ ╎ ╎ 6 @Base/array.jl:869 collect_to_with_first! ╎ ╎ ╎ ╎ 6 @Base/array.jl:914 collect_to! ╎ ╎ ╎ ╎ 6 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 6 none:? #get_CollisionNode##0 ╎ ╎ ╎ ╎ ╎ 6 @PeriodicGraphs/…:148 coordination_sequence(g::Perio… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 _neighborhood(g::PeriodicGraph… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:133 falses(dims::Int64) ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:100 falses(dims::Tuple{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:991 BitArray(::UndefInitializer, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 BitVector(::UndefInitialize… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 iterate(t::Tuple{Int64}) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:387 iterate(t::Tuple{Int64}, i:… ╎ ╎ ╎ ╎ ╎ 2 @PeriodicGraphs/…:100 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 2 @Base/…array.jl:103 falses(dims::Int64) 2╎ ╎ ╎ ╎ ╎ 2 @Base/…piler.jl:58 falses(dims::Tuple{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:103 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:669 setindex!(B::BitVector, x::Boo… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:663 checkbounds(A::BitVector, I::… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:104 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:689 setindex!(B::BitVector, x::Boo… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:676 checkbounds(A::BitVector, I::… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:683 _unsafe_bitsetindex! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1053 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:110 _neighborhood(g::PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:1242 setindex!(B::BitVector, x::Bo… ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:1250 checkbounds(A::BitVector, I::… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:340 getindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 getindex ╎ ╎ ╎ 1 @CrystalNets/…ty.jl:236 collision_nodes(net::CrystalNet2D{Ra… ╎ ╎ ╎ 1 @CrystalNets/…ty.jl:120 shrink_collisions(net::CrystalNet2D… ╎ ╎ ╎ 1 @PeriodicGraphs/…l:136 getindex(A::Vector{SVector{2, Ratio… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…l:130 PeriodicGraph2D(nv::Int64, t::Vect… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 iterate(e::Base.Iterators.Enumerate{V… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 iterate(e::Base.Iterators.Enumerate{… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 iterate(A::Vector{PeriodicEdge2D}) ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 iterate(A::Vector{PeriodicEdge2D}, … ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _iterate_abstractarray(A::Vector{P… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort!(v::Vector{PeriodicEdge2D}… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1380 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1128 _sort!(v::Vector{PeriodicE… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:506 !(x::Bool) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:714 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:654 GenericMemory ╎ ╎ ╎ 8 @CrystalNets/…ery.jl:56 topological_genome(net::CrystalNet2D{… ╎ ╎ ╎ 8 @CrystalNets/…ery.jl:63 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 1 @CrystalNets/…gy.jl:669 topological_key(net::CrystalNet2D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:112 vect(X::Tuple{Int64, Int64, SVector… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:134 candidate_key(net::CrystalNet2D{Ra… ╎ ╎ ╎ ╎ 1 @Base/iterators.jl:197 inv(A::SMatrix{2, 2, Rational{Int… ╎ ╎ ╎ ╎ 1 @Base/…ctarray.jl:1242 _inv(::Size{(2, 2)}, A::SMatrix{… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1250 det(A::SMatrix{2, 2, Rational{In… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:1040 _det(::Size{(2, 2)}, A::SMatrix… ╎ ╎ ╎ 7 @CrystalNets/…gy.jl:684 topological_key(net::CrystalNet2D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:402 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:158 candidate_key(net::CrystalNet2D{Ra… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1373 inv(A::SMatrix{2, 2, Rational{Int128… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1376 _inv(::Size{(2, 2)}, A::SMatrix{2, … ╎ ╎ ╎ ╎ 1 @Base/array.jl:1233 det(A::SMatrix{2, 2, Rational{Int1… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1209 _growend_internal!(a::Vector{Tupl… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1129 unsafe_copyto!(dest::MemoryRef{T… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:654 GenericMemory ╎ ╎ ╎ 2 @CrystalNets/…y.jl:403 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:356 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:10 materialize!(dest::SubArray{Int64,… ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:89 materialize!(::Base.Broadcast.Def… ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:108 copyto!(dest::SubArray{Int64, 1,… ╎ ╎ ╎ ╎ 1 @Base/…motion.jl:485 copyto!(dest::SubArray{Int64, 1,… ╎ ╎ ╎ ╎ ╎ 1 @Base/…motion.jl:631 axes(S::SubArray{Int64, 1, Vect… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:405 +(x::Rational{Int128}, y::Rati… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ecked.jl:297 checked_mul(x::Int128, y::Int1… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:358 candidate_key_unstable(net::Crysta… ╎ ╎ ╎ ╎ 1 @Base/broadcast.jl:897 materialize!(dest::SubArray{Int64… ╎ ╎ ╎ ╎ 1 @StaticArrays/….jl:60 materialize!(::Base.Broadcast.Def… ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:119 instantiate(bc::Base.Broadcast.B… ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:135 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:413 -(x::Rational{Int128}, y::Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:269 gcd(a::UInt128, b::UInt128) 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:0 div ╎ ╎ ╎ 1 @CrystalNets/…y.jl:407 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1734 materialize(bc::Base.Broadcast.Broadca… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1741 copy(bc::Base.Broadcast.Broadcasted{B… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 copyto!(dest::Vector{Int64}, bc::Bas… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 copyto!(dest::Vector{Int64}, bc::Bas… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 axes(A::Vector{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1380 _sort!(v::Vector{Tuple{Int64,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _issorted(v::Vector{Tuple{In… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1154 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1165 _sort!(v::Vector{Tuple{Int… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:845 _sort!(v::Vector{Tuple{Int… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ng.jl:118 getindex(A::Vector{Tuple{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…le.jl:626 isless ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rs.jl:484 isless 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ 1 @CrystalNets/…y.jl:431 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @Base/task.jl:1071 yield() ╎ ╎ ╎ ╎ 1 @Base/task.jl:1233 wait() 1╎ ╎ ╎ ╎ 1 @Base/libuv.jl:133 record_running_time!(t::Task) ╎ ╎ ╎ 2 @CrystalNets/…y.jl:439 topological_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:75 findbasis(edges::Vector{Tuple{Int64… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:36 findfirstbasis(offsets::Vector{SVe… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:159 normal_basis_rational(list::Vecto… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:144 normal_basis(l::Vector{MVector{2… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:108 extended_gcd(s::Base.Generator{… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1357 BigInt() ╎ ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:984 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:998 _unsafe_getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:1007 _unsafe_getindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/…esian.jl:65 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:1009 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1048 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:0 _setindex! ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:88 findbasis(edges::Vector{Tuple{Int64… ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:32 push!(a::Vector{SVector{2, Rationa… ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:202 all ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:211 _all ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:88 (::CrystalNets.var"#findbasis##0… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:10 *(A::SMatrix{2, 2, Rational{BigI… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:89 _mul(::Size{(2, 2)}, ::Size{(2,… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:108 getindex(v::SMatrix{2, 2, Rati… ╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:410 promote ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:388 _promote ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…nal.jl:185 Rational 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:315 BigInt ............ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ........ ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== 24 / 36 .................................................. 25 / 36 ...┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000761f897a8b50 Total snapshots: 419. Utilization: 0% ╎419 @Base/task.jl:1168 wait_forever() 418╎ 419 @Base/task.jl:1246 wait() ............................................... 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .......................... [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 19770561 (Pool: 19769869; Big: 692); GC: 17 [37] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/gASyq/test/runtests.jl:415 ws_queue_pop at /source/src/work-stealing-queue.h:79:17 [inlined] gc_ptr_queue_pop at /source/src/gc-stock.c:1640:5 [inlined] gc_mark_and_steal at /source/src/gc-stock.c:2569:19 _jl_gc_collect at /source/src/gc-stock.c:3143:9 ijl_gc_collect at /source/src/gc-stock.c:3526:13 maybe_collect at /source/src/gc-stock.c:357:9 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:734:5 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:792:12 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:806:13 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41:30 GenericMemory at ./boot.jl:654:2 [inlined] array_new_memory at ./array.jl:1129:4 [inlined] _growend_internal! at ./array.jl:1209:70 _growend! at ./array.jl:1233:53 [inlined] _push! at ./array.jl:1376:2 [inlined] push! at ./array.jl:1373:21 [inlined] _neighborhood at /home/pkgeval/.julia/packages/PeriodicGraphs/kX3ve/src/algorithms/neighborhood.jl:107:187 coordination_sequence at /home/pkgeval/.julia/packages/PeriodicGraphs/kX3ve/src/algorithms/neighborhood.jl:148:6 #get_CollisionNode##0 at ./none (unknown line) [inlined] iterate at ./generator.jl:48:23 [inlined] collect_to! at ./array.jl:914:11 [inlined] collect_to_with_first! at ./array.jl:869:11 [inlined] collect at ./array.jl:843:114 get_CollisionNode at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/stability.jl:28:9 get_CollisionList at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/stability.jl:87:32 collision_nodes at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/stability.jl:232:272 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:22:53 unknown function (ip: 0x7e6f3e1bb1e3) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153:242 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87:5 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:10 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:4 unknown function (ip: 0x7e6f080fa96c) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7e6f64813249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1516101518 (Pool: 1516096861; Big: 4657); GC: 540 PkgEval terminated after 2722.26s: test duration exceeded the time limit