Package evaluation to test CrystalNets on Julia 1.14.0-DEV.2082 (4fdd12e277*) started at 2026-04-26T16:34:40.376 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.55s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [7952bbbe] + CrystalNets v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.2.0 [864edb3b] + DataStructures v0.19.4 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] + PeriodicGraphs v1.0.1 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.4.0+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 6.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 2.5 s ✓ Chemfiles_jll 2.3 s ✓ spglib_jll 7.4 s ✓ AtomsBase 81.6 s ✓ PeriodicGraphs 7.9 s ✓ Chemfiles 102.4 s ✓ PeriodicGraphEmbeddings 26.0 s ✓ PeriodicGraphEquilibriumPlacement 334.1 s ✓ CrystalNets 8 dependencies successfully precompiled in 565 seconds. 59 already precompiled. Precompilation completed after 588.66s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_UL7Ljy/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [86223c79] Graphs v1.14.0 [18c5b727] PeriodicGraphs v1.0.1 [90137ffa] StaticArrays v1.9.18 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UL7Ljy/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.2.0 [864edb3b] DataStructures v0.19.4 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v1.0.2 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.3 [18c5b727] PeriodicGraphs v1.0.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.4.0+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 73 3 76 18m10.6s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 0.7s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 9m40.9s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 1m05.0s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.3s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .............. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 37 running 1 of 1 signal (10): User defined signal 1 getindex at ./essentials.jl:1040:10 [inlined] _spmatmul! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/linalg.jl:91:115 spdensemul! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/linalg.jl:60:19 [inlined] generic_matmatmul! at /source/usr/share/julia/stdlib/v1.14/SparseArrays/src/linalg.jl:50:3 [inlined] generic_matmatmul_wrapper! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:348:3 [inlined] _mul! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:333:150 [inlined] mul! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:302:3 [inlined] mul! at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:270:2 [inlined] _mul at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:123:18 [inlined] mul at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:119:2 [inlined] * at /source/usr/share/julia/stdlib/v1.14/LinearAlgebra/src/matmul.jl:116:2 [inlined] dixon_p at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:441:190 try_modulo at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:487:41 [inlined] dixon_solve at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/solver.jl:507:10 equilibrium at /home/pkgeval/.julia/packages/PeriodicGraphEquilibriumPlacement/XoJMq/src/embedding.jl:41:170 CrystalNet at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:675:43 #UnderlyingNets##8 at ./none (unknown line) iterate at ./generator.jl:48:23 [inlined] _append! at ./array.jl:1451:19 append! at ./array.jl:1444:4 [inlined] UnderlyingNets at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/types.jl:992:168 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:86:2 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:10 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:4 unknown function (ip: 0x7b86319d51fc) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7b868e118249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== .. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b86739fc010 Total snapshots: 58. Utilization: 100% ╎57 @Base/client.jl:593 _start() ╎ 57 @Base/client.jl:318 exec_options(opts::Base.JLOptions) ╎ 57 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ 57 @Base/Base.jl:328 (::Base.IncludeInto)(fname::String) ╎ 57 @Base/Base.jl:327 include(mapexpr::Function, mod::Module, _path::Stri… ╎ 57 @Base/loading.jl:3173 _include(mapexpr::Function, mod::Module, _path… ╎ ╎ 57 @Base/loading.jl:3113 include_string(mapexpr::typeof(identity), mod… ╎ ╎ 57 @Base/boot.jl:517 eval(m::Module, e::Any) ╎ ╎ 57 @CrystalNets/…query.jl:90 topological_genome(g::PeriodicGraph3D) ╎ ╎ 57 @CrystalNets/…uery.jl:90 #topological_genome#224 ╎ ╎ 43 @CrystalNets/…uery.jl:86 topological_genome ╎ ╎ ╎ 43 @CrystalNets/…pes.jl:992 UnderlyingNets(g::PeriodicGraph3D, op… ╎ ╎ ╎ 43 @Base/array.jl:1444 materialize(bc::Base.Broadcast.Broadcaste… ╎ ╎ ╎ 43 @Base/array.jl:1451 _append!(a::Vector{Tuple{Vector{CrystalN… ╎ ╎ ╎ 43 @Base/generator.jl:48 iterate(::Base.Generator{Vector{Vecto… ╎ ╎ ╎ 43 none:? (::CrystalNets.var"#UnderlyingNets##8#UnderlyingNet… ╎ ╎ ╎ ╎ 42 @CrystalNets/…s.jl:675 (CrystalNet3D)(cell::PeriodicGraph… ╎ ╎ ╎ ╎ 42 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::P… ╎ ╎ ╎ ╎ 42 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::… ╎ ╎ ╎ ╎ 42 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo(::… ╎ ╎ ╎ ╎ 8 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:905 copy(a::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:908 length(t::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:950 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:997 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…dloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:675 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:702 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:564 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:555 + ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:186 add_ui(a::BigInt, b::… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:185 BigInt() ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:116 copy(a::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:119 length(t::Matrix{Int64}) ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:123 prod(x::Tuple{Int64, Int64}) ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:270 mul! ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:302 mul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:333 _mul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @LinearAlgebra/…:348 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ ╎ 7 @SparseArrays/…:91 _spmatmul!(C::Matrix{Big… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:569 getindex(::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:568 * ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:201 mul_si(a::BigInt, b::In… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:71 BigInt(; nbits::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:92 finalizer 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:200 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:507 getindex(::Matrix{BigInt}… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:172 add(a::BigInt, b::BigInt) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:69 kwcall(::@NamedTuple{nbi… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:70 BigInt(; nbits::Int64) 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:157 init2!(x::BigInt, a::… ╎ ╎ ╎ ╎ 29 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 11 @PeriodicGraphEquilibriumPlacement/…:311 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 11 @PeriodicGraphEquilibriumPlacement/…:273 forward_su… ╎ ╎ ╎ ╎ ╎ 11 @Base/…mdloop.jl:77 getindex(::Matrix{PeriodicGrap… ╎ ╎ ╎ ╎ ╎ 11 @PeriodicGraphEquilibriumPlacement/…:274 _getinde… ╎ ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:327 widemul 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ ╎ 5 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1058 - 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:1227 - ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…rs.jl:320 != 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…on.jl:637 == ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:1078 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:988 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:951 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ 5 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rs.jl:320 != 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 - 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:1078 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:988 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:951 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:492 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 - ╎ ╎ ╎ ╎ ╎ 10 @PeriodicGraphEquilibriumPlacement/…:312 linsolve!(F… ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:2800 getindex(A::SparseArrays.Spars… ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:2784 getindex_cols(A::SparseArrays… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1048 Vector{PeriodicGraphEquilibri… 2╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:1053 _setindex! ╎ ╎ ╎ ╎ ╎ 3 @SparseArrays/…:2785 getindex_cols(A::SparseArrays… 3╎ ╎ ╎ ╎ ╎ 3 @Base/…ials.jl:1040 (::Colon)(start::Int64, stop:… ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:1867 copyto!(dest::Matrix{PeriodicG… ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:1867 _copyto2arg!(dest::Matrix{Per… ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:1856 copyto!(dest::Matrix{Periodi… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:0 _fkeep!(f::SparseArrays.var"#tr… ╎ ╎ ╎ ╎ ╎ 2 @SparseArrays/…:1792 _fkeep!(f::SparseArrays.var… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1039 (::Colon)(start::Int64, sto… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:391 UnitRange{Int64}(start::Int… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:387 unitrange_last(start::Int64… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:1040 (::Colon)(start::Int64, sto… ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1797 _fkeep!(f::SparseArrays.var… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1053 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1798 _fkeep!(f::SparseArrays.var… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1048 getindex(A::Vector{Int64}, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1052 _setindex! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:391 checkbounds 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:387 checkbounds ╎ ╎ ╎ ╎ ╎ 8 @PeriodicGraphEquilibriumPlacement/…:313 linsolve!(F… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:0 backward_substitution!(U::Sparse… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:291 backward_s… ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:905 getindex(A::Vector{Int64}, i::… ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:908 checkbounds(A::Vector{Int64},… ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:950 copyto! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:991 copyto! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:0 copyto!(dest::SubArray{Period… ╎ ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:295 backward_s… ╎ ╎ ╎ ╎ ╎ 6 @Base/…mdloop.jl:77 inv(x::PeriodicGraphEquilibriu… ╎ ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:296 macro ex… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:73 * 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:244 mul_with_overflow ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 - 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 - ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:68 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:55 + ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:434 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:393 div 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:341 div ╎ ╎ ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:60 - ╎ ╎ ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:1078 Int32 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:988 toInt32 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:951 checked_trunc_sint ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ion.jl:492 mod ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:327 mod ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:404 fld ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:435 div ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1058 - 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1227 - ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:177 signbit 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:448 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:173 materialize(bc::Base.Broadcast.Broa… 1╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:171 instantiate(bc::Base.Broadcast.Bro… ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:455 dixon_p(::Va… ╎ ╎ ╎ ╎ ╎ 4 @PeriodicGraphEquilibriumPlacement/…:370 _inner_dixo… 4╎ ╎ ╎ ╎ ╎ 4 @Base/gmp.jl:228 pop!(a::Vector{Int64}) ╎ ╎ ╎ ╎ 1 @CrystalNets/…s.jl:676 (CrystalNet3D)(cell::PeriodicGraph… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEmbeddings/…:463 PeriodicGraphEmbeddings.S… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEmbeddings/…:432 PeriodicGraphEmbeddings.… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEmbeddings/…:373 return_to_box(g::Period… ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:897 iterate(e::Base.Iterators.Enumer… ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:922 iterate(e::Base.Iterators.Enume… ╎ ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:950 iterate(A::ColumnSlices{Matrix… ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:997 iterate(A::ColumnSlices{Matrix… ╎ ╎ ╎ ╎ ╎ 1 @Base/…dloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:998 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:615 getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:619 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:699 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:674 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:698 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:699 _getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…st.jl:668 _broadcast_getindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1040 getindex ╎ ╎ 14 @CrystalNets/…uery.jl:87 topological_genome ╎ ╎ ╎ 14 @CrystalNets/…ery.jl:153 topological_genome(group::UnderlyingN… ╎ ╎ ╎ 1 @CrystalNets/…ery.jl:22 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 1 @CrystalNets/…ty.jl:189 collision_nodes(net::CrystalNet3D{Ra… ╎ ╎ ╎ 1 @CrystalNets/…ty.jl:144 collect_collisions(net::CrystalNet3… ╎ ╎ ╎ 1 @CrystalNets/…ls.jl:32 all(f::CrystalNets.var"#collect_col… ╎ ╎ ╎ ╎ 1 @Base/reducedim.jl:995 all(f::CrystalNets.var"#collect_co… ╎ ╎ ╎ ╎ 1 @Base/reducedim.jl:995 _all(f::CrystalNets.var"#collect_… ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:211 iterate(A::Vector{SVector{3, Ration… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:144 (::CrystalNets.var"#collect_coll… ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:305 all(f::CrystalNets.var"#collect_… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:305 all(f::CrystalNets.var"#collect… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:153 _mapreduce(::StaticArrays.var"… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:155 _mapfoldl(f::StaticArrays.var"… ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:180 &(x::Bool, y::Bool) ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:305 #300 ╎ ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…:144 #collect_collisions##2 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:485 <=(x::Int64, y::Rational{In… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ber.jl:327 widemul(x::Int64, y::Int128) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1056 * ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:362 rem ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:332 BigInt(x::Int128) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:315 getproperty(x::BigInt, f… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int64) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 BigInt(; nbits::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 finalizer(f::Ptr{Not… ╎ ╎ ╎ 13 @CrystalNets/…ery.jl:36 topological_genome(net::CrystalNet3D{… ╎ ╎ ╎ 13 @CrystalNets/…on.jl:282 minimize ╎ ╎ ╎ 13 @CrystalNets/…on.jl:275 minimize(net::CrystalNet3D{Rational… ╎ ╎ ╎ 13 @CrystalNets/…on.jl:47 find_all_valid_translations(net::Cr… ╎ ╎ ╎ ╎ 13 @PeriodicGraphEmbeddings/…:378 indexed_iterate(t::Tuple{I… ╎ ╎ ╎ ╎ 13 @PeriodicGraphEmbeddings/…:395 check_valid_symmetry(pge:… ╎ ╎ ╎ ╎ 13 @PeriodicGraphEmbeddings/…:346 _find_closest_point_afte… ╎ ╎ ╎ ╎ 13 @Base/…oadcast.jl:905 materialize(bc::Base.Broadcast.B… ╎ ╎ ╎ ╎ 13 @Base/…adcast.jl:908 copy(B::Base.Broadcast.Broadcast… ╎ ╎ ╎ ╎ ╎ 13 @StaticArrays/…l:63 _broadcast(::typeof(-), ::Size{(… ╎ ╎ ╎ ╎ ╎ 13 @StaticArrays/…l:70 _copyto! ╎ ╎ ╎ ╎ ╎ 13 @StaticArrays/…:143 _broadcast! ╎ ╎ ╎ ╎ ╎ 13 @StaticArrays/…:158 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:408 -(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ 2 @Base/…onal.jl:413 -(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…onal.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…uncs.jl:63 gcd(a::UInt128, b::UInt128) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…uncs.jl:87 _gcd(ain::UInt128, bin::UIn… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:580 >>(x::UInt128, y::Int64) 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:574 ifelse(condition::Bool, x:… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…uncs.jl:88 _gcd(ain::UInt128, bin::UIn… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ncs.jl:69 absdiff(x::UInt128, y::UInt… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:649 -(x::UInt128, y::UInt128) 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:851 ifelse ╎ ╎ ╎ ╎ ╎ 10 @Base/…onal.jl:414 -(x::Rational{Int128}, y::Rat… 1╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…cked.jl:297 checked_mul(x::Int128, y::In… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…cked.jl:268 mul_with_overflow(x::Int128… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:405 cld(a::Int128, b::Int128) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:444 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:393 div 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:404 fld(a::Int128, b::Int128) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:434 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:393 div 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1045 div ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…onal.jl:48 checked_mul(x::Int128, y::Int… ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…onal.jl:43 Rational ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…onal.jl:60 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ ╎ 6 @Base/…ncs.jl:63 gcd(a::UInt128, b::UInt128) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ncs.jl:87 _gcd(ain::UInt128, bin::UI… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:580 >>(x::UInt128, y::Int64) 2╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:574 ifelse(condition::Bool, … ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…ncs.jl:88 _gcd(ain::UInt128, bin::UI… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…cs.jl:69 absdiff(x::UInt128, y::UIn… 3╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ncs.jl:89 _gcd(ain::UInt128, bin::UI… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:487 <<(x::UInt128, y::Int64) .┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000746122c945b0 Total snapshots: 402. Utilization: 0% ╎402 @Base/task.jl:1168 wait_forever() 401╎ 402 @Base/task.jl:1246 wait() ... [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) Allocations: 20145866 (Pool: 20145168; Big: 698); GC: 17 [37] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/gASyq/test/runtests.jl:415 unsafe_store! at ./pointer.jl:178:7 [inlined] setindex! at /home/pkgeval/.julia/packages/StaticArrays/0cEwi/src/MArray.jl:35:26 [inlined] macro expansion at /home/pkgeval/.julia/packages/StaticArrays/0cEwi/src/broadcast.jl:159:3 [inlined] _broadcast! at /home/pkgeval/.julia/packages/StaticArrays/0cEwi/src/broadcast.jl:143:23 [inlined] _copyto! at /home/pkgeval/.julia/packages/StaticArrays/0cEwi/src/broadcast.jl:70:48 [inlined] copyto! at /home/pkgeval/.julia/packages/StaticArrays/0cEwi/src/broadcast.jl:63:3 [inlined] materialize! at ./broadcast.jl:908:12 [inlined] materialize! at ./broadcast.jl:905:5 [inlined] _find_closest_point_after_symop at /home/pkgeval/.julia/packages/PeriodicGraphEmbeddings/910BA/src/symmetries.jl:346:152 check_valid_symmetry at /home/pkgeval/.julia/packages/PeriodicGraphEmbeddings/910BA/src/symmetries.jl:395:88 check_valid_symmetry at /home/pkgeval/.julia/packages/PeriodicGraphEmbeddings/910BA/src/symmetries.jl:378:1 [inlined] find_all_valid_translations at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:47:52 minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:275:13 minimize at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/minimization.jl:282:5 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:36:83 unknown function (ip: 0x7b8635ec30e3) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:153:371 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:87:5 [inlined] #topological_genome#224 at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:10 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/gASyq/src/query.jl:90:4 unknown function (ip: 0x7b86319d51fc) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x7b868e118249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1415546204 (Pool: 1415541576; Big: 4628); GC: 522 PkgEval terminated after 2724.89s: test duration exceeded the time limit