Package evaluation to test OceanBioME on Julia 1.14.0-DEV.2071 (559ec66647*) started at 2026-04-24T01:34:56.182 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.74s ################################################################################ # Installation # Installing OceanBioME... Resolving package versions... Installed GibbsSeaWater ─ v0.1.4 Updating `~/.julia/environments/v1.14/Project.toml` [a49af516] + OceanBioME v0.16.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.5.2 [a9b6321e] + Atomix v1.1.3 [ab4f0b2a] + BFloat16s v0.6.1 [fa961155] + CEnum v0.5.0 ⌅ [052768ef] + CUDA v5.11.2 [1af6417a] + CUDA_Runtime_Discovery v2.0.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [21656369] + ExpressionExplorer v1.1.4 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.18.0 [0c68f7d7] + GPUArrays v11.5.3 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.9.1 [096a3bc2] + GPUToolbox v1.1.1 [9a22fb26] + GibbsSeaWater v0.1.4 [c27321d9] + Glob v1.4.0 [076d061b] + HashArrayMappedTries v0.2.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.7.1 [63c18a36] + KernelAbstractions v0.9.41 [ba0b0d4f] + Krylov v0.10.6 [929cbde3] + LLVM v9.5.0 [8b046642] + LLVMLoopInfo v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [46d2c3a1] + MuladdMacro v0.2.4 [5da4648a] + NVTX v1.0.3 [a49af516] + OceanBioME v0.16.12 [9e8cae18] + Oceananigans v0.107.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [94ee1d12] + Quaternions v0.7.7 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [a3311ec8] + ReactantCore v0.1.19 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.6.0 [6c6a2e73] + Scratch v1.3.0 [d496a93d] + SeawaterPolynomials v0.3.10 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [892a3eda] + StringManipulation v0.4.4 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.20.10 [e689c965] + Tracy v0.1.6 [013be700] + UnsafeAtomics v0.3.1 [d1e2174e] + CUDA_Compiler_jll v0.4.3+0 [4ee394cb] + CUDA_Driver_jll v13.2.1+0 [76a88914] + CUDA_Runtime_jll v0.21.0+1 [f5851436] + FFTW_jll v3.3.11+0 [6727f6b2] + GibbsSeaWater_jll v3.5.2+0 [e33a78d0] + Hwloc_jll v2.13.0+1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] + LLVMExtra_jll v0.0.40+0 [ad6e5548] + LibTracyClient_jll v0.13.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.2+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [1e29f10c] + demumble_jll v1.3.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.30+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building GibbsSeaWater → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f4318e7a751703a5db8b57c112e5cd5c218d296b/build.log` Installation completed after 20.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 3.0 s ✓ GibbsSeaWater_jll ┌ Warning: You are using Julia v1.13 or later!" │ Oceananigans is currently tested on Julia v1.12." │ If you find issues with Julia v1.13 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/tBtso/src/Oceananigans.jl:126 27.9 s ✓ Oceananigans → OceananigansCUDAExt 2.5 s ✓ GibbsSeaWater ┌ Warning: You are using Julia v1.13 or later!" │ Oceananigans is currently tested on Julia v1.12." │ If you find issues with Julia v1.13 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/tBtso/src/Oceananigans.jl:126 38.4 s ✓ OceanBioME 4 dependencies successfully precompiled in 74 seconds. 181 already precompiled. 2 dependencies had output during precompilation: ┌ Oceananigans → OceananigansCUDAExt │ ┌ Warning: You are using Julia v1.13 or later!" │ │ Oceananigans is currently tested on Julia v1.12." │ │ If you find issues with Julia v1.13 or later," │ │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new │ └ @ Oceananigans ~/.julia/packages/Oceananigans/tBtso/src/Oceananigans.jl:126 └ ┌ OceanBioME │ ┌ Warning: You are using Julia v1.13 or later!" │ │ Oceananigans is currently tested on Julia v1.12." │ │ If you find issues with Julia v1.13 or later," │ │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new │ └ @ Oceananigans ~/.julia/packages/Oceananigans/tBtso/src/Oceananigans.jl:126 └ Precompilation completed after 125.49s ################################################################################ # Testing # Testing OceanBioME Status `/tmp/jl_kLUEgt/Project.toml` [79e6a3ab] Adapt v4.5.2 [a9b6321e] Atomix v1.1.3 ⌅ [052768ef] CUDA v5.11.2 [124859b0] DataDeps v0.7.13 [e30172f5] Documenter v1.17.0 [9a22fb26] GibbsSeaWater v0.1.4 [033835bb] JLD2 v0.6.4 [63c18a36] KernelAbstractions v0.9.41 [a49af516] OceanBioME v0.16.12 [9e8cae18] Oceananigans v0.107.3 [6fe1bfb0] OffsetArrays v1.17.0 [d496a93d] SeawaterPolynomials v0.3.10 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kLUEgt/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.5.2 [a9b6321e] Atomix v1.1.3 [ab4f0b2a] BFloat16s v0.6.1 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 ⌅ [052768ef] CUDA v5.11.2 [1af6417a] CUDA_Runtime_Discovery v2.0.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.4 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.4 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.18.0 [0c68f7d7] GPUArrays v11.5.3 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.9.1 [096a3bc2] GPUToolbox v1.1.1 [9a22fb26] GibbsSeaWater v0.1.4 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [b5f81e59] IOCapture v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.0 [63c18a36] KernelAbstractions v0.9.41 [ba0b0d4f] Krylov v0.10.6 [929cbde3] LLVM v9.5.0 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.2.0 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [739be429] MbedTLS v1.1.10 [46d2c3a1] MuladdMacro v0.2.4 [5da4648a] NVTX v1.0.3 [a49af516] OceanBioME v0.16.12 [9e8cae18] Oceananigans v0.107.3 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [94ee1d12] Quaternions v0.7.7 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [a3311ec8] ReactantCore v0.1.19 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [7e506255] ScopedValues v1.6.0 [6c6a2e73] Scratch v1.3.0 [d496a93d] SeawaterPolynomials v0.3.10 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [892a3eda] StringManipulation v0.4.4 [09ab397b] StructArrays v0.7.3 [ec057cc2] StructUtils v2.8.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [6aa5eb33] TaylorSeries v0.20.10 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [013be700] UnsafeAtomics v0.3.1 [d1e2174e] CUDA_Compiler_jll v0.4.3+0 [4ee394cb] CUDA_Driver_jll v13.2.1+0 [76a88914] CUDA_Runtime_jll v0.21.0+1 [2e619515] Expat_jll v2.7.3+0 [f5851436] FFTW_jll v3.3.11+0 [6727f6b2] GibbsSeaWater_jll v3.5.2+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.54.0+0 [e33a78d0] Hwloc_jll v2.13.0+1 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] LLVMExtra_jll v0.0.40+0 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] NVTX_jll v3.2.2+0 [fe0851c0] OpenMPI_jll v5.0.11+0 [9bd350c2] OpenSSH_jll v10.3.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [1e29f10c] demumble_jll v1.3.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.30+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: You are using Julia v1.13 or later!" │ Oceananigans is currently tested on Julia v1.12." │ If you find issues with Julia v1.13 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/tBtso/src/Oceananigans.jl:126 [ Info: Benchmark times are given for each solver, but should be taken with a pinch of salt as they vary a lot depending on the problem and start point [ Info: Tested NewtonRaphsonSolver with benchmark time: 1118.1ns per solve [ Info: Tested NewtonRaphsonSafeSolver with benchmark time: 907.5ns per solve [ Info: Tested DampedNewtonRaphsonSolver with benchmark time: 1078.2ns per solve [ Info: Tested Bisection with benchmark time: 2825.9ns per solve Test Summary: | Pass Total Time Testing solvers | 20 20 7.2s [ Info: Initializing simulation... [ Info: ... simulation initialization complete (554.076 ms) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (11.730 seconds). [ Info: Initializing simulation... [ Info: ... simulation initialization complete (307.518 ms) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (1.317 seconds). Test Summary: | Pass Total Time Test negative tracer handeling | 2 2 2m56.5s Test Summary: | Pass Total Time Test sinking velocity setup | 6 6 2.4s ┌ Info: Testing light with LOBSTER in NonhydrostaticModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in NonhydrostaticModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with LOBSTER in HydrostaticFreeSurfaceModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in HydrostaticFreeSurfaceModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with LOBSTER in HydrostaticFreeSurfaceModel on 5×5×2 LatitudeLongitudeGrid{Float64, Periodic, Bounded, Bounded} on CPU with 3×3×2 halo │ ├── longitude: Periodic λ ∈ [-180.0, 180.0) regularly spaced with Δλ=72.0 │ ├── latitude: Bounded φ ∈ [-85.0, 85.0] regularly spaced with Δφ=34.0 └ └── z: Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in HydrostaticFreeSurfaceModel on 5×5×2 LatitudeLongitudeGrid{Float64, Periodic, Bounded, Bounded} on CPU with 3×3×2 halo │ ├── longitude: Periodic λ ∈ [-180.0, 180.0) regularly spaced with Δλ=72.0 │ ├── latitude: Bounded φ ∈ [-85.0, 85.0] regularly spaced with Δφ=34.0 └ └── z: Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... Test Summary: | Pass Total Time Light attenuaiton model | 36 36 18m05.8s Test Summary: | Pass Total Time Float32 TwoBandPhotosyntheticallyActiveRadiation | 8 8 3.8s Test Summary: | Pass Total Time Testing basic particle property integration | 3 3 32.7s WARNING: Method definition required_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:18 overwritten at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:50. Test Summary: | Pass Total Time Testing particle tracer detection | 2 2 19.4s Test Summary: | Pass Total Time Testing particle lagrangian advection | 2 2 6.4s WARNING: Method definition coupled_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:19 overwritten at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:90. WARNING: Method definition SimpleParticleBiogeochemistry(Base.Val{:A}, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:52 overwritten at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_particles.jl:92. Test Summary: | Pass Total Time Testing particle-tracer uptake | 2 2 3.7s Test Summary: | Pass Total Time Testing particle-tracer uptake with scalefactors | 2 2 0.1s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/TwoParticleAndDissolved/false/false | 5 5 35.6s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/TwoParticleAndDissolved/false/false | 5 5 29.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/TwoParticleAndDissolved/false/false | 7 7 33.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/TwoParticleAndDissolved/false/false | 7 7 36.3s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/TwoParticleAndDissolved/false/false | 5 5 29.0s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/TwoParticleAndDissolved/false/false | 5 5 34.1s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/TwoParticleAndDissolved/false/false | 7 7 36.0s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/TwoParticleAndDissolved/false/false | 7 7 39.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/VariableRedfieldDetritus/false/false | 5 5 36.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/VariableRedfieldDetritus/false/false | 5 5 38.3s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/VariableRedfieldDetritus/false/false | 7 7 43.4s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/VariableRedfieldDetritus/false/false | 7 7 47.2s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/VariableRedfieldDetritus/false/false | 5 5 40.2s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/VariableRedfieldDetritus/false/false | 5 5 47.1s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/VariableRedfieldDetritus/false/false | 7 7 48.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/VariableRedfieldDetritus/false/false | 7 7 54.1s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/TwoParticleAndDissolved/true/false | 5 5 0.5s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/TwoParticleAndDissolved/true/false | 5 5 1.3s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/TwoParticleAndDissolved/true/false | 7 7 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/TwoParticleAndDissolved/true/false | 7 7 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/TwoParticleAndDissolved/true/false | 5 5 0.6s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/TwoParticleAndDissolved/true/false | 5 5 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/TwoParticleAndDissolved/true/false | 7 7 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/TwoParticleAndDissolved/true/false | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/VariableRedfieldDetritus/true/false | 5 5 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/VariableRedfieldDetritus/true/false | 5 5 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/VariableRedfieldDetritus/true/false | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/VariableRedfieldDetritus/true/false | 7 7 1.0s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/VariableRedfieldDetritus/true/false | 5 5 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/VariableRedfieldDetritus/true/false | 5 5 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/VariableRedfieldDetritus/true/false | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/VariableRedfieldDetritus/true/false | 7 7 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/TwoParticleAndDissolved/false/true | 5 5 0.4s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/TwoParticleAndDissolved/false/true | 5 5 0.6s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/TwoParticleAndDissolved/false/true | 7 7 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/TwoParticleAndDissolved/false/true | 7 7 0.7s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/TwoParticleAndDissolved/false/true | 5 5 0.5s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/TwoParticleAndDissolved/false/true | 5 5 0.6s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/TwoParticleAndDissolved/false/true | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/TwoParticleAndDissolved/false/true | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Nothing/VariableRedfieldDetritus/false/true | 5 5 0.8s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Nothing/VariableRedfieldDetritus/false/true | 5 5 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Nothing/VariableRedfieldDetritus/false/true | 7 7 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Nothing/VariableRedfieldDetritus/false/true | 7 7 1.0s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/Nothing/Oxygen/VariableRedfieldDetritus/false/true | 5 5 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/Nothing/Oxygen/VariableRedfieldDetritus/false/true | 5 5 0.9s Test Summary: | Pass Total Time LOBSTER (NitrateAmmonia/CarbonateSystem/Oxygen/VariableRedfieldDetritus/false/true | 7 7 1.0s Test Summary: | Pass Total Time LOBSTER (NitrateAmmoniaIron/CarbonateSystem/Oxygen/VariableRedfieldDetritus/false/true | 7 7 1.1s Test Summary: | Pass Total Time Float32 LOBSTER | 8 8 3.5s [ Info: Testing on CPU with sinking ❌, open bottom ❌) Test Summary: | Pass Total Time NPZD CPU(), false, false | 5 5 58.9s [ Info: Testing on CPU with sinking ❌, open bottom ✅) Test Summary: | Pass Total Time NPZD CPU(), false, true | 5 5 5.6s [ Info: Testing on CPU with sinking ✅, open bottom ❌) Test Summary: | Pass Total Time NPZD CPU(), true, false | 5 5 19.0s Test Summary: | Pass Total Time Float32 NPZD | 19 19 0.4s [ Info: Testing PISCES element conservation (C, Fe, P, Si, N) [ Info: Testing PISCES auxiliary field computation and timestepping ┌ Warning: This implementation of PISCES is in early development and has not yet been validated against the operational version └ @ OceanBioME.Models.PISCESModel ~/.julia/packages/OceanBioME/uvQ0Y/src/Models/AdvectedPopulations/PISCES/PISCES.jl:348 [ Info: Testing PISCES negativity protection ┌ Warning: This implementation of PISCES is in early development and has not yet been validated against the operational version └ @ OceanBioME.Models.PISCESModel ~/.julia/packages/OceanBioME/uvQ0Y/src/Models/AdvectedPopulations/PISCES/PISCES.jl:348 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 270 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm5Value33stripPointerCastsForAliasAnalysisEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult10aliasCheckEPKNS_5ValueENS_12LocationSizeES3_S4_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13BasicAAResult5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults5aliasERKNS_14MemoryLocationES3_RNS_11AAQueryInfoEPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults13getModRefInfoEPKNS_8CallBaseERKNS_14MemoryLocationERNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9AAResults13getModRefInfoEPKNS_11InstructionERKSt8optionalINS_14MemoryLocationEERNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18DSEState13isReadClobberERKN4llvm14MemoryLocationEPNS1_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18DSEState15getDomMemoryDefEPN4llvm9MemoryDefEPNS1_12MemoryAccessERKNS1_14MemoryLocationEPKNS1_5ValueERjSC_bSC_b at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_1L19eliminateDeadStoresERN4llvm8FunctionERNS0_9AAResultsERNS0_9MemorySSAERNS0_13DominatorTreeERNS0_17PostDominatorTreeERKNS0_17TargetLibraryInfoERKNS0_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7DSEPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:977:12 operator() at /source/src/jitlayers.cpp:1276:17 operator() at /source/src/jitlayers.cpp:1413:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2340:18 materialize at /source/src/jitlayers.cpp:883:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2046:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:496:39 jl_compile_method_internal at /source/src/gf.c:3652:27 _jl_invoke at /source/src/gf.c:4105:16 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 #_#21 at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:46:38 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 Kernel at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:39:5 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #_launch!#14 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:388:73 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _launch! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:361:34 [inlined] #launch!#9 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:338:12 [inlined] launch! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:338:6 [inlined] #compute_interior_tendency_contributions!#25 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:122:212 compute_interior_tendency_contributions! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:46:17 [inlined] compute_tendencies! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:33:21 update_state! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:51:88 update_state! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:23:2 unknown function (ip: 0x766b06c37542) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 #NonhydrostaticModel#10 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:303:440 unknown function (ip: 0x766b06c2e249) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 NonhydrostaticModel at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:124:197 unknown function (ip: 0x766b06c28fef) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 test_PISCES_negativity_protection at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_PISCES.jl:145:162 unknown function (ip: 0x766b06c25bfc) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 unknown function (ip: 0x766b643319e2) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x766b7a756249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] start_task at /source/src/task.c:1275:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007fcc488af850 Total snapshots: 421. Utilization: 0% ╎421 @Base/task.jl:1168 wait_forever() 420╎ 421 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457:34 wait at ./task.jl:1246:50 wait_forever at ./task.jl:1168:5 [270] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_PISCES.jl:170 _ZN4llvm5SUnit7addPredERKNS_4SDepEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17ScheduleDAGInstrs20addChainDependenciesEPNS_5SUnitERNS0_12Value2SUsMapENS_12PointerUnionIJPKNS_5ValueEPKNS_17PseudoSourceValueEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17ScheduleDAGInstrs15buildSchedGraphEPNS_9AAResultsEPNS_18RegPressureTrackerEPNS_13PressureDiffsEPNS_13LiveIntervalsEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_120SchedulePostRATDList8scheduleEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_115PostRAScheduler20runOnMachineFunctionERN4llvm15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1392:23 compileModule at /source/src/jitlayers.cpp:2348:79 materialize at /source/src/jitlayers.cpp:884:36 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:353:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2046:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:496:39 jl_compile_method_internal at /source/src/gf.c:3652:27 _jl_invoke at /source/src/gf.c:4105:16 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 #_#21 at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:46:38 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 Kernel at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:39:5 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:897:26 #_launch!#14 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:388:73 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _launch! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:361:34 [inlined] #launch!#9 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:338:12 [inlined] launch! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Utils/kernel_launching.jl:338:6 [inlined] #compute_interior_tendency_contributions!#25 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:122:212 compute_interior_tendency_contributions! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:46:17 [inlined] compute_tendencies! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:33:21 update_state! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:51:88 update_state! at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:23:2 unknown function (ip: 0x766b06c37542) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 #NonhydrostaticModel#10 at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:303:440 unknown function (ip: 0x766b06c2e249) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 NonhydrostaticModel at /home/pkgeval/.julia/packages/Oceananigans/tBtso/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:124:197 unknown function (ip: 0x766b06c28fef) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 test_PISCES_negativity_protection at /home/pkgeval/.julia/packages/OceanBioME/uvQ0Y/test/test_PISCES.jl:145:162 unknown function (ip: 0x766b06c25bfc) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 eval_body at /source/src/interpreter.c:550:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 eval_body at /source/src/interpreter.c:558:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 unknown function (ip: 0x766b643319e2) at (unknown file) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 include_string at ./loading.jl:3113:145 _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 _include at ./loading.jl:3173:45 include at ./Base.jl:327:3 IncludeInto at ./Base.jl:328:4 jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:243:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:693:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884:21 ijl_eval_thunk at /source/src/toplevel.c:768:18 jl_toplevel_eval_flex at /source/src/toplevel.c:712:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:602:15 jl_toplevel_eval_flex at /source/src/toplevel.c:684:27 ijl_toplevel_eval at /source/src/toplevel.c:782:12 ijl_toplevel_eval_in at /source/src/toplevel.c:827:13 eval at ./boot.jl:517:3 exec_options at ./client.jl:318:410 _start at ./client.jl:593:36 jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4113:23 [inlined] ijl_apply_generic at /source/src/gf.c:4339:12 jl_apply at /source/src/julia.h:2327:12 [inlined] true_main at /source/src/jlapi.c:971:29 jl_repl_entrypoint at /source/src/jlapi.c:1138:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x766b7a756249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 911933504 (Pool: 902070054; Big: 9863450); GC: 1724 PkgEval terminated after 2726.52s: test duration exceeded the time limit