Package evaluation to test NeighbourLists on Julia 1.14.0-DEV.2071 (559ec66647*) started at 2026-04-23T17:27:26.166


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.79s


################################################################################
# Installation
#

Installing NeighbourLists...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [2fcf5ba9] + NeighbourLists v0.6.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [6a4ca0a5] + AcceleratedKernels v0.4.3
  [79e6a3ab] + Adapt v4.5.2
  [dce04be8] + ArgCheck v2.5.0
  [a9b6321e] + Atomix v1.1.3
  [6e4b80f9] + BenchmarkTools v1.8.0
  [34da2185] + Compat v4.18.1
  [46192b85] + GPUArraysCore v0.2.0
  [682c06a0] + JSON v1.5.0
  [63c18a36] + KernelAbstractions v0.9.41
  [1914dd2f] + MacroTools v0.5.16
  [2fcf5ba9] + NeighbourLists v0.6.0
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.2
  [ae029012] + Requires v1.3.1
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [ec057cc2] + StructUtils v2.8.0
  [013be700] + UnsafeAtomics v0.3.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.30+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 4.88s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
   8.0 s  ✓ NeighbourLists
   4.8 s  ✓ NeighbourLists → NeighbourListsAtomsBaseExt
  20.2 s  ✓ NeighbourLists → NeighbourListsCUDAExt
  3 dependencies successfully precompiled in 36 seconds. 162 already precompiled.

Precompilation completed after 68.49s


################################################################################
# Testing
#

     Testing NeighbourLists
      Status `/tmp/jl_2xySRM/Project.toml`
  [a963bdd2] AtomsBase v0.5.2
  [f5cc8831] AtomsBuilder v0.2.3
⌃ [052768ef] CUDA v5.11.2
  [992eb4ea] CondaPkg v0.2.34
  [b4f34e82] Distances v0.10.12
  [f6369f11] ForwardDiff v1.3.3
  [b8a86587] NearestNeighbors v0.4.27
  [2fcf5ba9] NeighbourLists v0.6.0 `~/.julia/packages/NeighbourLists/wX4iR/`
  [6099a3de] PythonCall v0.9.31
  [90137ffa] StaticArrays v1.9.18
  [1986cc42] Unitful v1.28.0
  [37e2e46d] LinearAlgebra v1.13.0
  [de0858da] Printf v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_2xySRM/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [6a4ca0a5] AcceleratedKernels v0.4.3
  [79e6a3ab] Adapt v4.5.2
  [dce04be8] ArgCheck v2.5.0
  [a9b6321e] Atomix v1.1.3
  [a963bdd2] AtomsBase v0.5.2
  [f5cc8831] AtomsBuilder v0.2.3
  [1692102d] AtomsIO v0.3.1
  [ab4f0b2a] BFloat16s v0.6.1
  [6e4b80f9] BenchmarkTools v1.8.0
  [d1d4a3ce] BitFlags v0.1.9
  [fa961155] CEnum v0.5.0
⌃ [052768ef] CUDA v5.11.2
  [1af6417a] CUDA_Runtime_Discovery v2.0.0
  [46823bd8] Chemfiles v0.10.43
  [944b1d66] CodecZlib v0.7.8
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [f0e56b4a] ConcurrentUtilities v2.5.1
  [992eb4ea] CondaPkg v0.2.34
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [b4f34e82] Distances v0.10.12
  [ffbed154] DocStringExtensions v0.9.5
  [460bff9d] ExceptionUnwrapping v0.1.11
  [e2ba6199] ExprTools v0.1.10
  [352459e4] ExtXYZ v0.2.2
  [f6369f11] ForwardDiff v1.3.3
  [0c68f7d7] GPUArrays v11.5.3
  [46192b85] GPUArraysCore v0.2.0
  [61eb1bfa] GPUCompiler v1.9.1
  [096a3bc2] GPUToolbox v1.1.1
  [cd3eb016] HTTP v1.11.0
  [076d061b] HashArrayMappedTries v0.2.0
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.5.0
  [63c18a36] KernelAbstractions v0.9.41
  [929cbde3] LLVM v9.5.0
  [8b046642] LLVMLoopInfo v1.0.0
  [b964fa9f] LaTeXStrings v1.4.0
  [9c8b4983] LightXML v0.9.3
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.2.0
  [1914dd2f] MacroTools v0.5.16
  [739be429] MbedTLS v1.1.10
  [0b3b1443] MicroMamba v0.1.15
  [5da4648a] NVTX v1.0.3
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.27
  [2fcf5ba9] NeighbourLists v0.6.0 `~/.julia/packages/NeighbourLists/wX4iR/`
  [4d8831e6] OpenSSL v1.6.1
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [7b2266bf] PeriodicTable v1.2.1
  [fa939f87] Pidfile v1.3.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.2
  [08abe8d2] PrettyTables v3.3.2
  [30e472fa] PubChemCrawler v1.4.0
  [6099a3de] PythonCall v0.9.31
  [74087812] Random123 v1.7.1
  [e6cf234a] RandomNumbers v1.6.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [7e506255] ScopedValues v1.6.0
  [6c6a2e73] Scratch v1.3.0
  [777ac1f9] SimpleBufferStream v1.2.0
  [276daf66] SpecialFunctions v2.7.2
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [892a3eda] StringManipulation v0.4.4
  [ec057cc2] StructUtils v2.8.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [e689c965] Tracy v0.1.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.6.1
  [1986cc42] Unitful v1.28.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [013be700] UnsafeAtomics v0.3.1
  [e17b2a0c] UnsafePointers v1.0.0
  [02310045] XCrySDenStructureFormat v0.2.0
  [d1e2174e] CUDA_Compiler_jll v0.4.3+0
  [4ee394cb] CUDA_Driver_jll v13.2.1+0
  [76a88914] CUDA_Runtime_jll v0.21.0+1
  [78a364fa] Chemfiles_jll v0.10.4+0
  [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0
  [dad2f222] LLVMExtra_jll v0.0.40+0
  [ad6e5548] LibTracyClient_jll v0.13.1+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [e98f9f5b] NVTX_jll v3.2.2+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [02c8fc9c] XML2_jll v2.15.1+0
  [1e29f10c] demumble_jll v1.3.0+0
  [6ecdc6fc] extxyz_jll v0.1.3+0
  [cdc7adba] libcleri_jll v0.12.1+3
  [f8abcde7] micromamba_jll v2.3.1+0
  [4d7b5844] pixi_jll v0.41.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.19.0+0
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2026.3.19
  [4536629a] OpenBLAS_jll v0.3.30+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.6+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.69.0+0
  [3f19e933] p7zip_jll v17.8.0+0
        Info Packages marked with ⌃ have new versions available and may be upgradable.
     Testing Running tests...
[ Info: CUDA loaded but not functional
┌ Info: AMDGPU not available
│   exception =
│    ArgumentError: Package AMDGPU not found in current path.
└    - Run `import Pkg; Pkg.add("AMDGPU")` to install the AMDGPU package.
┌ Info: Metal not available
│   exception =
│    ArgumentError: Package Metal not found in current path.
└    - Run `import Pkg; Pkg.add("Metal")` to install the Metal package.
[ Info: No GPU backend available, using CPU
# threads = 1
# GPU backend = none
Checking that `fnbody` is correct...
[ Info: Testing PairList Correctness: 
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = top-level scope at test_celllist.jl:18
└ @ Core ~/.julia/packages/NeighbourLists/wX4iR/test/test_celllist.jl:18
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed
typeof(nlist) = PairList{Float64, Int32, Vector{SVector{3, Float64}}, Vector{Int32}, Vector{SVector{3, Int32}}}
Test Passed
sorted: Test Passed
neigs: Test Passed

┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = test_legacy_vs_sortbased(; N::Int64, density::Float64, cutoff_frac::Float64, pbc::SVector{3, Bool}) at test_utils.jl:315
└ @ Main ~/.julia/packages/NeighbourLists/wX4iR/test/test_utils.jl:315
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = test_all_pbc_legacy_vs_sortbased(; N::Int64, density::Float64, cutoff_frac::Float64) at test_utils.jl:333
└ @ Main ~/.julia/packages/NeighbourLists/wX4iR/test/test_utils.jl:333
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = (::var"#47#48")(X::Vector{SVector{3, Float64}}, C::SMatrix{3, 3, Float64, 9}, cutoff::Float64, pbc::SVector{3, Bool}) at test_sortbased.jl:30
└ @ Main ~/.julia/packages/NeighbourLists/wX4iR/test/test_sortbased.jl:30
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = top-level scope at test_sortbased.jl:9
└ @ Core ~/.julia/packages/NeighbourLists/wX4iR/test/test_sortbased.jl:9
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = top-level scope at test_sortbased.jl:9
└ @ Core ~/.julia/packages/NeighbourLists/wX4iR/test/test_sortbased.jl:9
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = (::var"#53#54")(X::Vector{SVector{3, Float64}}, C::SMatrix{3, 3, Float64, 9}, L::Float64, cutoff::Float64) at test_sortbased.jl:68
└ @ Main ~/.julia/packages/NeighbourLists/wX4iR/test/test_sortbased.jl:68
┌ Warning: PairList(X::Vector{SVec}, ...) uses the legacy linked-list algorithm. Use `neighbour_list(X, cutoff, cell, pbc)` for the sort-based implementation with multi-threading and GPU support.
│   caller = macro expansion at test_unified_api.jl:62 [inlined]
└ @ Core ~/.julia/packages/NeighbourLists/wX4iR/test/test_unified_api.jl:62
Test Summary:  | Pass  Broken  Total     Time
NeighbourLists |  598       3    601  1m45.1s
     Testing NeighbourLists tests passed 

Testing completed after 148.55s

PkgEval succeeded after 261.32s